Home  |  Contact
Entry: PS00961

General information about the entry

Entry name [info] RIBOSOMAL_S28E
Accession [info] PS00961
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE;
10-FEB-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00743

Name and characterization of the entry

Description [info] Ribosomal protein S28e signature.
Pattern [info] 
E-[ST]-[EA]-R-E-A-[RK]-x-[LI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_01 which contains 564'277 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 52 in 52 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.55 %
Recall (true positives / (true positives + false negatives)) 82.54 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 52 sequences 

RS281_ARATH (Q9SR73    ), RS282_ARATH (P34789    ), RS28A_SCHPO (P0CT79    ), 

RS28A_YEAST (Q3E7X9    ), RS28B_SCHPO (P0CT80    ), RS28B_YEAST (P0C0X0    ), 
RS28_AERPE  (Q9Y9A6    ), RS28_ARCFU  (O29493    ), RS28_ASHGO  (Q74ZD8    ), 
RS28_BOMMO  (Q6PS50    ), RS28_BOVIN  (Q56JX6    ), RS28_CAEEL  (Q95Y04    ), 
RS28_CANGA  (Q6FLC3    ), RS28_DANRE  (Q6PBK3    ), RS28_DICDI  (Q54MZ5    ), 
RS28_DROME  (Q9W334    ), RS28_HUMAN  (P62857    ), RS28_HYPBU  (A2BK95    ), 
RS28_ICTPU  (Q90YP3    ), RS28_KLULA  (P33285    ), RS28_KLUMA  (P33286    ), 
RS28_MAIZE  (P46302    ), RS28_META3  (A6UT50    ), RS28_METJA  (P54065    ), 
RS28_METKA  (Q8TVE7    ), RS28_METM5  (A4FYI6    ), RS28_METM6  (A9A7E6    ), 
RS28_METM7  (A6VJU6    ), RS28_METMP  (Q6LZI8    ), RS28_METS5  (A4YCQ2    ), 
RS28_METVS  (A6USH4    ), RS28_MOUSE  (P62858    ), RS28_NEUCR  (Q7S6W5    ), 
RS28_PAPDA  (Q6EV21    ), RS28_PICTO  (Q6KZI6    ), RS28_PIG    (Q6QAT1    ), 
RS28_PYRAB  (P61029    ), RS28_PYRAE  (Q8ZTA7    ), RS28_PYRAR  (A4WLP1    ), 
RS28_PYRFU  (Q8U159    ), RS28_PYRHO  (P61030    ), RS28_PYRIL  (A1RS33    ), 
RS28_PYRNV  (B1Y9V2    ), RS28_RAT    (P62859    ), RS28_SACS2  (Q980Q5    ), 
RS28_SPOFR  (Q962Q2    ), RS28_SULAC  (Q4JAV1    ), RS28_SULTO  (Q975Z8    ), 
RS28_THEAC  (P57711    ), RS28_THEKO  (Q5JGR4    ), RS28_THEPD  (A1RXH2    ), 
RS28_THEVO  (Q97BK7    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 11 sequences 

RS28_HALLT  (B9LPY3    ), RS28_HALS3  (B0R500    ), RS28_HALSA  (P57710    ), 

RS28_HALWD  (Q18GA9    ), RS28_KORCO  (B1L5N5    ), RS28_METAC  (Q8TQL8    ), 
RS28_METMA  (Q8PU75    ), RS28_METTH  (O26356    ), RS28_NANEQ  (P61031    ), 
RS28_NATPD  (Q3IPM8    ), RS28_OSTOS  (O61590    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

IF2_CYTH3   (Q11PK5    ), SYI_LACLA   (Q9CEH8    ), TREH_MYCTU  (P71741    )


				
	

	

		PDB
[Detailed view]		
		
			179 PDB
			


			1NY4; 3J6X; 3J6Y; 3J77; 3J78; 3J7P; 3J7R; 3J80; 3J81; 3JAM; 3JAP; 3JAQ; 
			
				4U3M; 4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 
				4U52; 4U53; 4U55; 4U56; 4U6F; 4UG0; 4V4N; 4V6I; 4V6U; 4V6W; 4V6X; 4V7R; 
				4V88; 4V8Y; 4V8Z; 4V92; 5A2Q; 5AJ0; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 
				5FCJ; 5FLX; 5I4L; 5IT7; 5IT9; 5JB3; 5JBH; 5JPQ; 5JUO; 5JUP; 5JUS; 5JUT; 
				5JUU; 5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 5OA3; 5OBM; 5ON6; 
				5T2C; 5TBW; 5TGA; 5TGM; 5TZS; 5VYC; 5WLC; 5WYJ; 5WYK; 6EK0; 6EML; 6FAI; 
				6FEC; 6FYX; 6FYY; 6G18; 6G4S; 6G4W; 6G51; 6G53; 6G5H; 6G5I; 6GQ1; 6GQB; 
				6GQV; 6GSM; 6GSN; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6KE6; 6LQP; 6LQQ; 6LQR; 
				6LQS; 6LQT; 6LQU; 6LQV; 6OLE; 6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 
				6QZP; 6RBD; 6RBE; 6S47; 6SKF; 6SKG; 6SNT; 6SV4; 6SW9; 6SWC; 6SWE; 6T4Q; 
				6T7I; 6T7T; 6T83; 6TB3; 6TH6; 6TNU; 6UZ7; 6WDR; 6WOO; 6XA1; 6Y0G; 6Y2L; 
				6Y57; 6Y7C; 6YBS; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZCE; 6ZLW; 6ZM7; 6ZME; 
				6ZMI; 6ZMO; 6ZMT; 6ZMW; 6ZN5; 6ZOJ; 6ZOL; 6ZON; 6ZP4; 6ZQA; 6ZQB; 6ZQC; 
				6ZQD; 6ZQE; 6ZQF; 6ZQG; 6ZU9; 6ZVH; 6ZVI; 6ZVJ; 7A09; 7A1G; 7K5I
			
			

			» more

				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission