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PROSITE entry PS00961


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General information about the entry

Entry name [info] RIBOSOMAL_S28E
Accession [info] PS00961
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00743

Name and characterization of the entry

Description [info] Ribosomal protein S28e signature.
Pattern [info] 
E-[ST]-[EA]-R-E-A-[RK]-x-[LI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 56 in 56 different sequences
Number of true positive hits 53 in 53 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.64 %
Recall (true positives / (true positives + false negatives)) 82.81 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 53 sequences 

RS281_ARATH (Q9SR73), RS282_ARATH (P34789), RS28A_NEUCR (Q7S6W5), 

RS28A_SCHPO (P0CT79), RS28A_YEAST (Q3E7X9), RS28B_CANAL (A0A1D8PQN0), 
RS28B_SCHPO (P0CT80), RS28B_YEAST (P0C0X0), RS28_AERPE  (Q9Y9A6), 
RS28_ARCFU  (O29493), RS28_BOMMO  (Q6PS50), RS28_BOVIN  (Q56JX6), 
RS28_CAEEL  (Q95Y04), RS28_CANGA  (Q6FLC3), RS28_DANRE  (Q6PBK3), 
RS28_DICDI  (Q54MZ5), RS28_DROME  (Q9W334), RS28_EREGS  (Q74ZD8), 
RS28_HUMAN  (P62857), RS28_HYPBU  (A2BK95), RS28_ICTPU  (Q90YP3), 
RS28_KLULA  (P33285), RS28_KLUMA  (P33286), RS28_MAIZE  (P46302), 
RS28_META3  (A6UT50), RS28_METJA  (P54065), RS28_METKA  (Q8TVE7), 
RS28_METM5  (A4FYI6), RS28_METM6  (A9A7E6), RS28_METM7  (A6VJU6), 
RS28_METMP  (Q6LZI8), RS28_METS5  (A4YCQ2), RS28_METVS  (A6USH4), 
RS28_MOUSE  (P62858), RS28_PAPDA  (Q6EV21), RS28_PICTO  (Q6KZI6), 
RS28_PIG(Q6QAT1), RS28_PYRAB  (P61029), RS28_PYRAE  (Q8ZTA7), 
RS28_PYRAR  (A4WLP1), RS28_PYRFU  (Q8U159), RS28_PYRHO  (P61030), 
RS28_PYRIL  (A1RS33), RS28_PYRNV  (B1Y9V2), RS28_RAT(P62859), 
RS28_SACS2  (Q980Q5), RS28_SPOFR  (Q962Q2), RS28_SULAC  (Q4JAV1), 
RS28_SULTO  (Q975Z8), RS28_THEAC  (P57711), RS28_THEKO  (Q5JGR4), 
RS28_THEPD  (A1RXH2), RS28_THEVO  (Q97BK7)
» more

UniProtKB/Swiss-Prot
False negative sequences		 11 sequences 

RS28_HALLT  (B9LPY3), RS28_HALS3  (B0R500), RS28_HALSA  (P57710), 

RS28_HALWD  (Q18GA9), RS28_KORCO  (B1L5N5), RS28_METAC  (Q8TQL8), 
RS28_METMA  (Q8PU75), RS28_METTH  (O26356), RS28_NANEQ  (P61031), 
RS28_NATPD  (Q3IPM8), RS28_OSTOS  (O61590)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

IF2_CYTH3   (Q11PK5), SYI_LACLA   (Q9CEH8), TREH_MYCTU  (P71741)


				
	

	

		PDB
[Detailed view]		
		
			245 PDB
			


			1NY4; 3J6X; 3J6Y; 3J77; 3J78; 3J7P; 3J7R; 3J80; 3J81; 3JAM; 3JAP; 4U3M; 
			
				4U3N; 4U3U; 4U4N; 4U4O; 4U4Q; 4U4R; 4U4U; 4U4Y; 4U4Z; 4U50; 4U51; 4U52; 
				4U53; 4U55; 4U56; 4U6F; 4UG0; 4V4N; 4V6I; 4V6U; 4V6W; 4V6X; 4V7R; 4V88; 
				4V8Y; 4V8Z; 4V92; 5A2Q; 5AJ0; 5DAT; 5DC3; 5DGE; 5DGF; 5DGV; 5FCI; 5FCJ; 
				5FLX; 5I4L; 5IT7; 5IT9; 5JB3; 5JBH; 5JPQ; 5JUO; 5JUP; 5JUS; 5JUT; 5JUU; 
				5LKS; 5LYB; 5M1J; 5MC6; 5MEI; 5NDG; 5NDV; 5NDW; 5OA3; 5OBM; 5ON6; 5T2C; 
				5TBW; 5TGA; 5TGM; 5TZS; 5VYC; 5WLC; 5WYJ; 5WYK; 6EML; 6FAI; 6FEC; 6FYX; 
				6FYY; 6G18; 6G4S; 6G4W; 6G51; 6G53; 6G5H; 6G5I; 6GQ1; 6GQB; 6GQV; 6GSM; 
				6GSN; 6HHQ; 6I7O; 6IP5; 6IP6; 6IP8; 6KE6; 6LQP; 6LQQ; 6LQR; 6LQS; 6LQT; 
				6LQU; 6LQV; 6OLE; 6OLF; 6OLG; 6OLI; 6OLZ; 6OM0; 6OM7; 6Q8Y; 6QZP; 6RBD; 
				6RBE; 6S47; 6SKF; 6SKG; 6SNT; 6SV4; 6SW9; 6SWC; 6SWE; 6T4Q; 6T7I; 6T7T; 
				6T83; 6TB3; 6TH6; 6TNU; 6UZ7; 6WDR; 6WOO; 6XA1; 6XU6; 6XU7; 6XU8; 6Y0G; 
				6Y2L; 6Y57; 6Y7C; 6YBS; 6Z6J; 6Z6K; 6Z6L; 6Z6M; 6Z6N; 6ZCE; 6ZLW; 6ZM7; 
				6ZME; 6ZMI; 6ZMO; 6ZMT; 6ZMW; 6ZN5; 6ZOJ; 6ZOL; 6ZON; 6ZP4; 6ZQA; 6ZQB; 
				6ZQC; 6ZQD; 6ZQE; 6ZQF; 6ZQG; 6ZU9; 6ZUO; 6ZV6; 6ZVH; 6ZVI; 6ZVJ; 6ZXD; 
				6ZXE; 6ZXF; 6ZXG; 6ZXH; 7A09; 7A1G; 7AJT; 7AJU; 7B7D; 7CPU; 7CPV; 7D4I; 
				7D5S; 7D5T; 7D63; 7K5I; 7LS1; 7LS2; 7MPI; 7MPJ; 7MQ8; 7MQ9; 7MQA; 7N8B; 
				7NRC; 7NRD; 7OYA; 7OYB; 7PZY; 7Q08; 7Q0F; 7Q0P; 7Q0R; 7QP6; 7QP7; 7R4X; 
				7R81; 7SUK; 7WTT; 7WTU; 7WTV; 7WTW; 7WTX; 7WTZ; 7WU0; 7XNX; 7XNY; 7ZAG; 
				7ZAH; 7ZAI; 7ZHG; 7ZUX; 7ZW0; 8BQX; 8C00; 8C01; 8CAH; 8CAS; 8CBJ; 8G5Y; 
				8G5Z; 8G60; 8G61; 8G6J; 8GLP
			
			

			» more