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PROSITE entry PS00968


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General information about the entry

Entry name [info] ANTENNA_COMP_ALPHA
Accession [info] PS00968
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED;
01-JUL-1998 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00748

Name and characterization of the entry

Description [info] Antenna complexes alpha subunits signature.
Pattern [info] 
[LIVFAG]-x-[GASV]-[LIVFA]-x-[IV]-H-x(3)-[LIVM]-[GSTAE]-[STANH]-x(1,3)-
[STN]-W-[LIVMFYW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.12 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 32 sequences 

LHA1_CERS4  (Q3J1A4), LHA1_CERSP  (P0C0X9), LHA1_HALHL  (P80100), 

LHA1_HALHR  (P80102), LHA1_RHOAC  (P35089), LHA1_RHOCA  (P02948), 
LHA1_RHOPA  (P35101), LHA1_RHOTE  (P80588), LHA1_RUBGE  (P0DJO0), 
LHA1_RUBGI  (I0HUL6), LHA2_CERS4  (Q3J144), LHA2_CERSP  (P0C0Y0), 
LHA2_HALHL  (P80101), LHA2_HALHR  (P80103), LHA2_RHOAC  (P35090), 
LHA2_RHOCA  (P07367), LHA2_RHOPA  (P35102), LHA2_RHOTE  (P80589), 
LHA3_HALHL  (P80107), LHA3_RHOAC  (P35091), LHA3_RHOPL  (P35103), 
LHA4_RHOAC  (P26789), LHA4_RHOPA  (P35104), LHA5_RHOPA  (P35105), 
LHA6_RHOAC  (P35092), LHA7_RHOAC  (P35093), LHA_AFIMA   (P80259), 
LHA_BLAVI   (P04123), LHA_CHLAA   (P07503), LHA_MAGML   (P97253), 
LHA_RHORU   (P02947), LHA_ROSDO   (P26273)
» more

UniProtKB/Swiss-Prot
False negative sequences		 2 sequences 

LHA2_RHOSU  (P95655), LHA_RHOTE   (P80586)


				
	

	

		PDB
[Detailed view]		
		
			28 PDB
			


			1IJD; 1KZU; 1LGH; 1NKZ; 1XRD; 2FKW; 4V9G; 6ET5; 7EQD; 7F0L; 7PBW; 7PIL; 
			
				7TUW; 7TV3; 7VA9; 7VB9; 7VNM; 7VNY; 7VOR; 7VOT; 7VOY; 7YML; 7ZDI; 7ZE3; 
				7ZE8; 8B64; 8FB9; 8FBB
			
			

			» more