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PROSITE entry PS00969


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General information about the entry

Entry name [info] ANTENNA_COMP_BETA
Accession [info] PS00969
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00748

Name and characterization of the entry

Description [info] Antenna complexes beta subunits signature.
Pattern [info] 
[EQ]-x(4)-[HGQ]-x(5)-[GSTA]-x(3)-[FYV]-x(3)-[AG]-x(2)-[AV]-H-x(7)-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 34 in 34 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 1
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 94.44 %
Recall (true positives / (true positives + false negatives)) 97.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 34 sequences 

LHB1_CERS4  (Q3J1A3), LHB1_CERSP  (P0C0Y1), LHB1_HALHL  (P80104), 

LHB1_MAGML  (P95673), LHB1_RHOAC  (P35094), LHB1_RHOCA  (P02950), 
LHB1_RHOPA  (P35106), LHB1_RHOTE  (P80590), LHB1_RUBGE  (P0DJO1), 
LHB1_RUBGI  (I0HUL8), LHB2_CERS4  (Q3J145), LHB2_CERSP  (P0C0Y2), 
LHB2_HALHL  (P80105), LHB2_MAGML  (P95674), LHB2_RHOAC  (P35095), 
LHB2_RHOCA  (P07368), LHB2_RHOPA  (P35107), LHB2_RHOSU  (P95654), 
LHB2_RHOTE  (P80591), LHB3_RHOAC  (P35096), LHB3_RHOPA  (P35108), 
LHB3_RUBGE  (P72281), LHB4_RHOAC  (P35097), LHB4_RHOPA  (P35109), 
LHB5_RHOAC  (P26790), LHB6_RHOAC  (P35098), LHB7_RHOAC  (P35099), 
LHB_AFIMA   (P80260), LHB_BLAVI   (P04124), LHB_CHLAA   (P09927), 
LHB_RHORT   (Q2RQ23), LHB_RHORU   (P0C190), LHB_RHOTE   (P80587), 
LHB_ROSDO   (P26274)
» more

UniProtKB/Swiss-Prot
False negative sequences		 1 sequence 

LHB2_HALHR  (P11696)


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			1 sequence
			


			
LHB1_HALHR  (P80106)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			2 sequences
			


			
JAL17_ARATH (O80736), LOZEN_DROME (Q9W349)


				
	

	

		PDB
[Detailed view]		
		
			31 PDB
			


			1DX7; 1IJD; 1JO5; 1KZU; 1LGH; 1NKZ; 1WRG; 2FKW; 4V9G; 6ET5; 7EQD; 7F0L; 
			
				7OY8; 7PBW; 7PIL; 7TUW; 7TV3; 7VA9; 7VB9; 7VNM; 7VNY; 7VOR; 7VOT; 7VOY; 
				7YML; 7ZDI; 7ZE3; 7ZE8; 8B64; 8FB9; 8FBB
			
			

			» more