PROSITE entry PS00969
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PURL: https://purl.expasy.org/prosite/signature/PS00969
Direct ScanProsite submission
General information about the entry
Entry name [info] | ANTENNA_COMP_BETA |
Accession [info] | PS00969 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1994 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00748 |
Name and characterization of the entry
Description [info] | Antenna complexes beta subunits signature. |
Pattern [info] |
[EQ]-x(4)-[HGQ]-x(5)-[GSTA]-x(3)-[FYV]-x(3)-[AG]-x(2)-[AV]-H-x(7)-P. |
Numerical results [info]
Total number of hits | 36 in 36 different sequences |
Number of true positive hits | 34 in 34 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 1 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 94.44 % |
Recall (true positives / (true positives + false negatives)) | 97.14 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
34 sequences
LHB1_CERS4 (Q3J1A3), LHB1_CERSP (P0C0Y1), LHB1_HALHL (P80104), LHB1_MAGML (P95673), LHB1_RHOAC (P35094), LHB1_RHOCA (P02950), LHB1_RHOPA (P35106), LHB1_RHOTE (P80590), LHB1_RUBGE (P0DJO1), LHB1_RUBGI (I0HUL8), LHB2_CERS4 (Q3J145), LHB2_CERSP (P0C0Y2), LHB2_HALHL (P80105), LHB2_MAGML (P95674), LHB2_RHOAC (P35095), LHB2_RHOCA (P07368), LHB2_RHOPA (P35107), LHB2_RHOSU (P95654), LHB2_RHOTE (P80591), LHB3_RHOAC (P35096), LHB3_RHOPA (P35108), LHB3_RUBGE (P72281), LHB4_RHOAC (P35097), LHB4_RHOPA (P35109), LHB5_RHOAC (P26790), LHB6_RHOAC (P35098), LHB7_RHOAC (P35099), LHB_AFIMA (P80260), LHB_BLAVI (P04124), LHB_CHLAA (P09927), LHB_RHORT (Q2RQ23), LHB_RHORU (P0C190), LHB_RHOTE (P80587), LHB_ROSDO (P26274)» more
|
UniProtKB/Swiss-Prot False negative sequences |
1 sequence
LHB2_HALHR (P11696) |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
LHB1_HALHR (P80106) |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
JAL17_ARATH (O80736), LOZEN_DROME (Q9W349) |
PDB [Detailed view] |
34 PDB
pdb_00001dx7; pdb_00001ijd; pdb_00001jo5; pdb_00001kzu; pdb_00001lgh; pdb_00001nkz; pdb_00001wrg; pdb_00002fkw; pdb_00004v9g; pdb_00006et5; pdb_00007eqd; pdb_00007f0l; pdb_00007oy8; pdb_00007pbw; pdb_00007pil; pdb_00007tuw; pdb_00007tv3; pdb_00007va9; pdb_00007vb9; pdb_00007vnm; pdb_00007vny; pdb_00007vor; pdb_00007vot; pdb_00007voy; pdb_00007yml; pdb_00007zcu; pdb_00007zdi; pdb_00007ze3; pdb_00007ze8; pdb_00008b64; pdb_00008fb9; pdb_00008fbb; pdb_00008ydm; pdb_00009k3q » more |