PROSITE entry PS00969

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General information about the entry

Entry name [info]	ANTENNA_COMP_BETA
Accession [info]	PS00969
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00748

Name and characterization of the entry

Description [info]	Antenna complexes beta subunits signature.
Pattern [info]	[EQ]-x(4)-[HGQ]-x(5)-[GSTA]-x(3)-[FYV]-x(3)-[AG]-x(2)-[AV]-H-x(7)-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	36 in 36 different sequences
Number of true positive hits	34 in 34 different sequences
Number of 'unknown' hits	0
Number of false positive hits	2 in 2 different sequences
Number of false negative sequences	1
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	94.44 %
Recall (true positives / (true positives + false negatives))	97.14 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	34 sequences LHB1_CERS4 (Q3J1A3), LHB1_CERSP (P0C0Y1), LHB1_HALHL (P80104), LHB1_MAGML (P95673), LHB1_RHOAC (P35094), LHB1_RHOCA (P02950), LHB1_RHOPA (P35106), LHB1_RHOTE (P80590), LHB1_RUBGE (P0DJO1), LHB1_RUBGI (I0HUL8), LHB2_CERS4 (Q3J145), LHB2_CERSP (P0C0Y2), LHB2_HALHL (P80105), LHB2_MAGML (P95674), LHB2_RHOAC (P35095), LHB2_RHOCA (P07368), LHB2_RHOPA (P35107), LHB2_RHOSU (P95654), LHB2_RHOTE (P80591), LHB3_RHOAC (P35096), LHB3_RHOPA (P35108), LHB3_RUBGE (P72281), LHB4_RHOAC (P35097), LHB4_RHOPA (P35109), LHB5_RHOAC (P26790), LHB6_RHOAC (P35098), LHB7_RHOAC (P35099), LHB_AFIMA (P80260), LHB_BLAVI (P04124), LHB_CHLAA (P09927), LHB_RHORT (Q2RQ23), LHB_RHORU (P0C190), LHB_RHOTE (P80587), LHB_ROSDO (P26274) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	1 sequence LHB2_HALHR (P11696)
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence LHB1_HALHR (P80106)
UniProtKB/Swiss-Prot False positive sequences	2 sequences JAL17_ARATH (O80736), LOZEN_DROME (Q9W349)
PDB [Detailed view]	32 PDB 1DX7; 1IJD; 1JO5; 1KZU; 1LGH; 1NKZ; 1WRG; 2FKW; 4V9G; 6ET5; 7EQD; 7F0L; 7OY8; 7PBW; 7PIL; 7TUW; 7TV3; 7VA9; 7VB9; 7VNM; 7VNY; 7VOR; 7VOT; 7VOY; 7YML; 7ZCU; 7ZDI; 7ZE3; 7ZE8; 8B64; 8FB9; 8FBB » more