PROSITE entry PS00983
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General information about the entry
| Entry name [info] | LY6_UPAR |
| Accession [info] | PS00983 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1994 CREATED;
01-JUN-1994 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00756 |
Name and characterization of the entry
| Description [info] | Ly-6 / u-PAR domain signature. |
| Pattern [info] |
[EQR]-C-[LIVMFYAH]-x-C-x(5,8)-C-x(3,8)-[EDNQSTV]-C-{C}-x(5)-C-
x(12,24)-C.
|
Numerical results [info]
| Total number of hits | 54 in 38 different sequences |
| Number of true positive hits | 52 in 36 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 2 in 2 different sequences |
| Number of false negative sequences | 52 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 96.30 % |
| Recall (true positives / (true positives + false negatives)) | 50.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 3 |
| Site [info] | disulfide at position 2 |
| Site [info] | disulfide at position 5 |
| Site [info] | disulfide at position 7 |
| Site [info] | disulfide at position 10 |
| Site [info] | disulfide at position 13 |
| Site [info] | disulfide at position 15 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
36 sequences
CD59_AOTTR (P51447), CD59_CALSQ (P46657), CD59_CHLAE (Q28216), CD59_HUMAN (P13987), CD59_MACFA (Q8SQ46), CD59_PAPSP (Q28785), CD59_PIG(O62680), CD59_PONAB (Q5R510), CD59_RAT(P27274), CD59_SHV21 (Q00996), GML_HUMAN (Q99445), HDBP1_MOUSE (Q9D1N2), LY6A_MOUSE (P05533), LY6C1_MOUSE (P0CW02), LY6C2_MOUSE (P0CW03), LY6D_BOVIN (Q148C3), LY6D_HUMAN (Q14210), LY6D_MOUSE (P35459), LY6F_MOUSE (P35460), LY6G_MOUSE (P35461), LY6I_MOUSE (Q9WU67), LY6S_HUMAN (P0DTL4), LYPD2_HUMAN (Q6UXB3), LYPD5_HUMAN (Q6UWN5), LYPD5_MOUSE (Q9D7Z7), PSCA_MOUSE (P57096), SLUR1_MOUSE (Q9Z0K7), SLUR2_MOUSE (P0DP59), UPAR_AOTTR (Q9GK77), UPAR_BOVIN (Q05588), UPAR_CHLAE (Q9GK79), UPAR_HUMAN (Q03405), UPAR_MACFA (Q9GK78), UPAR_MOUSE (P35456), UPAR_PANTR (Q9GK80), UPAR_RAT(P49616)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
52 sequences
BNCR_DANRE (P0DPQ9), BNCR_ORYLA (H2LID1), CD177_HUMAN (Q8N6Q3), CD59A_MOUSE (O55186), CD59B_MOUSE (P58019), CD59_RABIT (O77541), CD59_SAISC (P47777), LPD6B_HUMAN (Q8NI32), LPD6B_MOUSE (Q9D7F2), LY65B_HUMAN (Q8NDX9), LY65B_MOUSE (Q8K1T4), LY65B_RAT (Q6MG53), LY65C_CANLF (Q9XSV5), LY65C_HUMAN (Q5SRR4), LY65C_MACMU (Q863H0), LY65C_MOUSE (Q8K1T5), LY65C_RAT (Q8CHN2), LY66C_BOVIN (A0JNL5), LY66C_HUMAN (O95867), LY66C_MOUSE (Q9Z1Q4), LY66D_HUMAN (O95868), LY66D_MOUSE (Q9Z1Q3), LY66D_RAT (Q6MG58), LY66E_MOUSE (Q8K1T6), LY6E_CHICK (Q90986), LY6E_HUMAN (Q16553), LY6E_MOUSE (Q64253), LY6H_HUMAN (O94772), LY6H_MOUSE (Q9WUC3), LYPD1_HUMAN (Q8N2G4), LYPD1_MOUSE (Q8BLC3), LYPD1_RAT (Q66H42), LYPD2_MOUSE (Q9DD23), LYPD3_HUMAN (O95274), LYPD3_MOUSE (Q91YK8), LYPD3_RAT (O55162), LYPD4_BOVIN (Q32LD3), LYPD4_HUMAN (Q6UWN0), LYPD4_MOUSE (Q8BVP6), PAT13_MOUSE (D3YWX3), PAT14_MOUSE (Q3UN54), PIP1_PIG(P83106), PSCA_HUMAN (O43653), SACA4_BOVIN (Q32PB3), SACA4_HUMAN (Q8TDM5), SACA4_MOUSE (Q80ZQ0), SLUR1_HUMAN (P55000), SOLD1_BOVIN (P83107), TX101_CRIGR (Q7TQN2), TX101_HUMAN (Q9BY14), TX101_MOUSE (Q9JMI7), TX101_RAT (Q924B5)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
CD59_SHEEP (P58020) |
| UniProtKB/Swiss-Prot False positive sequences |
2 sequences
IBBB2_HYAOR (C0HM41), IBBC1_HYAOR (C0HLT4) |
| PDB [Detailed view] |
29 PDB
1CDQ; 1CDR; 1CDS; 1ERG; 1ERH; 1YWH; 2FD6; 2I9B; 2J8B; 2OFS; 2UWR; 2UX2; 3BT1; 3BT2; 3LAQ; 3U73; 3U74; 4BIK; 4K24; 4QTI; 5IMT; 5IMY; 6AEX; 6ZD0; 7E17; 7V63; 8B0F; 8B0G; 8B0H » more |