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PROSITE entry PS01000
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General information about the entry
| Entry name [info] | SDH_CYT_1 |
| Accession [info] | PS01000 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1994 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00767 |
Name and characterization of the entry
| Description [info] | Succinate dehydrogenase cytochrome b subunit signature 1. |
| Pattern [info] |
R-P-[LIVMT]-x(3)-[LIVM]-x(6)-[LIVMWPK]-x(4)-S-x(2)-H-R-x-[ST]. |
Numerical results [info]
| Total number of hits | 24 in 24 different sequences |
| Number of true positive hits | 24 in 24 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 4 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 85.71 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | heme(?) at position 11 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
24 sequences
C560_BOVIN (P35720), C560_CAEBR (P41955), C560_CAEEL (P41956), C560_CHOCR (P48934), C560_CRIGR (P70097), C560_CYACA (P48935), C560_HUMAN (Q99643), C560_MARPO (P35721), C560_MOUSE (Q9CZB0), C560_PIG(D0VWV4), C560_PORPU (P80478), C560_RECAM (P80481), DHSC_ASCSU (P92506), DHSC_COXBU (P51055), DHSC_ECO57 (P69055), DHSC_ECOLI (P69054), DHSC_RICBR (Q1RHB5), DHSC_RICFE (Q4UKC1), DHSC_RICPR (P41085), DHSC_RICTY (Q68XP1), DHSC_SALTI (P63726), DHSC_SALTY (P63725), SDH3_YEAST (P33421), SHH3_YEAST (Q04487)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
4 sequences
C560_DICDI (Q8T2T5), DHSC_PARDE (Q59659), DHSC_RICCN (Q92J99), SDHC_MYCTU (O53368)» more |
| PDB [Detailed view] |
49 PDB
1NEK; 1NEN; 1ZOY; 1ZP0; 2ACZ; 2WDQ; 2WDR; 2WDV; 2WP9; 2WS3; 2WU2; 2WU5; 3ABV; 3AE1; 3AE2; 3AE3; 3AE4; 3AE5; 3AE6; 3AE7; 3AE8; 3AE9; 3AEA; 3AEB; 3AEC; 3AED; 3AEE; 3AEF; 3AEG; 3SFD; 3SFE; 3VR8; 3VR9; 3VRA; 3VRB; 4YSX; 4YSY; 4YSZ; 4YT0; 4YTM; 4YTN; 4YTP; 4YXD; 5C2T; 5C3J; 6LO8; 6WU6; 7JZ2; 8GS8 » more |