PROSITE entry PS01000

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PURL: https://purl.expasy.org/prosite/signature/PS01000

Direct ScanProsite submission

General information about the entry

Entry name [info]	SDH_CYT_1
Accession [info]	PS01000
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00767

Name and characterization of the entry

Description [info]	Succinate dehydrogenase cytochrome b subunit signature 1.
Pattern [info]	R-P-[LIVMT]-x(3)-[LIVM]-x(6)-[LIVMWPK]-x(4)-S-x(2)-H-R-x-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	24 in 24 different sequences
Number of true positive hits	24 in 24 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	4
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	85.71 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Site [info]	heme(?) at position 11
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

24 sequences

C560_BOVIN  (P35720), C560_CAEBR  (P41955), C560_CAEEL  (P41956),

C560_CHOCR  (P48934), C560_CRIGR  (P70097), C560_CYACA  (P48935), 
C560_HUMAN  (Q99643), C560_MARPO  (P35721), C560_MOUSE  (Q9CZB0), 
C560_PIG(D0VWV4), C560_PORPU  (P80478), C560_RECAM  (P80481), 
DHSC_ASCSU  (P92506), DHSC_COXBU  (P51055), DHSC_ECO57  (P69055), 
DHSC_ECOLI  (P69054), DHSC_RICBR  (Q1RHB5), DHSC_RICFE  (Q4UKC1), 
DHSC_RICPR  (P41085), DHSC_RICTY  (Q68XP1), DHSC_SALTI  (P63726), 
DHSC_SALTY  (P63725), SDH3_YEAST  (P33421), SHH3_YEAST  (Q04487)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

4 sequences

C560_DICDI  (Q8T2T5), DHSC_PARDE  (Q59659), DHSC_RICCN  (Q92J99),

SDHC_MYCTU  (O53368)

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PDB
[Detailed view]

49 PDB

pdb_00001nek; pdb_00001nen; pdb_00001zoy; pdb_00001zp0; pdb_00002acz; pdb_00002wdq; pdb_00002wdr; pdb_00002wdv; pdb_00002wp9; pdb_00002ws3; pdb_00002wu2; pdb_00002wu5; pdb_00003abv; pdb_00003ae1; pdb_00003ae2; pdb_00003ae3; pdb_00003ae4; pdb_00003ae5; pdb_00003ae6; pdb_00003ae7; pdb_00003ae8; pdb_00003ae9; pdb_00003aea; pdb_00003aeb; pdb_00003aec; pdb_00003aed; pdb_00003aee; pdb_00003aef; pdb_00003aeg; pdb_00003sfd; pdb_00003sfe; pdb_00003vr8; pdb_00003vr9; pdb_00003vra; pdb_00003vrb; pdb_00004ysx; pdb_00004ysy; pdb_00004ysz; pdb_00004yt0; pdb_00004ytm; pdb_00004ytn; pdb_00004ytp; pdb_00004yxd; pdb_00005c2t; pdb_00005c3j; pdb_00006lo8; pdb_00006wu6; pdb_00007jz2; pdb_00008gs8
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