PROSITE entry PS01005

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General information about the entry

Entry name [info]	FORMATE_NITRITE_TP_1
Accession [info]	PS01005
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-JUL-1998 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00769

Name and characterization of the entry

Description [info]	Formate and nitrite transporters signature 1.
Pattern [info]	[LIVMA]-[LIVMY]-x-G-[GSTA]-[DES]-L-[FI]-[TN]-[GS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	17 in 17 different sequences
Number of true positive hits	13 in 13 different sequences
Number of 'unknown' hits	0
Number of false positive hits	4 in 4 different sequences
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	76.47 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

13 sequences

FDHC_METFO  (P35839), FDHC_METTF  (Q50568), FOCA_ECO57  (P0AC25),

FOCA_ECOL6  (P0AC24), FOCA_ECOLI  (P0AC23), FOCA_HAEIN  (P43756), 
FOCB_ECOLI  (P77733), NIRC_ECOLI  (P0AC26), NIRC_SALTY  (P25926), 
NIRC_SHIFL  (P0AC27), YHA8_YEAST  (P38750), YRHG_BACSU  (O05399), 
YWCJ_BACSU  (P39608)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
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Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False positive sequences

4 sequences

SEM3E_CHICK (O42237), THADA_CANLF (A8C750), THADA_CHLAE (A8C752),

THADA_HUMAN (Q6YHU6)

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PDB
[Detailed view]

2 PDB

3KCU; 3KCV