PROSITE entry PS01034
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General information about the entry
| Entry name [info] | GH16_1 |
| Accession [info] | PS01034 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1994 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00794 |
| Associated ProRule [info] | PRU10064 |
Name and characterization of the entry
| Description [info] | Glycosyl hydrolases family 16 active sites. |
| Pattern [info] |
E-[LIV]-D-[LIVF]-x(0,1)-E-x(2)-[GQ]-[KRNF]-x-[PSTA]. |
Numerical results [info]
| Total number of hits | 66 in 66 different sequences |
| Number of true positive hits | 50 in 50 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 16 in 16 different sequences |
| Number of false negative sequences | 28 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 75.76 % |
| Recall (true positives / (true positives + false negatives)) | 64.10 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 1 |
| Site [info] | active_site at position 6 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
50 sequences
AGAR_STRCO (P07883), CGKA_PSEVC (P43478), E13B_NIACI (P23903), EXOK_RHIME (P33693), GUB_ACET2 (A3DBX3), GUB_ACETH (Q84C00), GUB_BACAM (P07980), GUB_BACLI (P27051), GUB_BACSU (P04957), GUB_BREBE (P37073), GUB_FIBSS (P17989), GUB_PAEMA (P23904), GUB_PAEPO (P45797), GUB_RHOMR (P45798), PORA_ZOBGA (D7GXG0), XTH12_ARATH (Q9FKL9), XTH13_ARATH (Q9FKL8), XTH14_ARATH (Q9ZSU4), XTH15_ARATH (Q38911), XTH16_ARATH (Q8LG58), XTH17_ARATH (O80803), XTH18_ARATH (Q9M0D2), XTH19_ARATH (Q9M0D1), XTH1_DIOKA (G5DAC6), XTH1_SOLLC (Q40144), XTH1_SOYBN (Q39857), XTH20_ARATH (Q9FI31), XTH21_ARATH (Q9ZV40), XTH22_ARATH (Q38857), XTH23_ARATH (Q38910), XTH24_ARATH (P24806), XTH25_ARATH (Q38907), XTH26_ARATH (Q9SVV2), XTH2_DIOKA (G5DAC7), XTH2_SOYBN (P35694), XTH34_POPPZ (Q8GZD5), XTH4_ARATH (Q39099), XTH5_ARATH (Q9XIW1), XTH6_ARATH (Q8LF99), XTH7_ARATH (Q8LER3), XTH7_DIOKA (A0A067XR63), XTH8_ARATH (Q8L9A9), XTH8_DIOKA (A0A067YMX8), XTH8_ORYSJ (Q76BW5), XTHA_PHAAN (Q41638), XTHB_PHAAN (Q8LNZ5), XTH_BRAOB (Q6YDN9), XTH_TOBAC (P93349), XTH_WHEAT (Q41542), XYND_RUMFL (Q53317)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
28 sequences
AGAA_MICTH (Q6F4N4), AGB34_AGAAL (A8W969), CFGA_TACTR (Q27082), CRF1_ASPFU (Q8J0P4), CRF2_ASPFU (Q4WI46), CRH1_YEAST (P53301), CRH2_YEAST (P32623), CRR1_EREGS (Q75A41), CRR1_YEAST (Q05790), E13B_CRYAT (C1IE32), EGLC_RHIME (Q9Z3Q2), EXSH_RHIME (O33680), GUB_ORPSP (O14412), XTH10_ARATH (Q9ZVK1), XTH11_ARATH (Q9SMP1), XTH1_ARATH (Q9SV61), XTH27_ARATH (Q8LDS2), XTH28_ARATH (Q38909), XTH29_ARATH (Q8L7H3), XTH2_ARATH (Q9SV60), XTH30_ARATH (Q38908), XTH31_ARATH (P93046), XTH32_ARATH (Q9SJL9), XTH33_ARATH (Q8LC45), XTH3_ARATH (Q9LJR7), XTH6_DIOKA (A0A067XRK9), XTH9_ARATH (Q8LDW9), YHZ7_SCHPO (Q9USW3)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
AGA34_AGAAL (P85974) |
| UniProtKB/Swiss-Prot False positive sequences |
16 sequences
4HYPE_ACIBT (A3M4A9), ADCK1_XENTR (Q5M7P6), ADCK5_HUMAN (Q3MIX3), ADCK5_MOUSE (Q80V03), C7345_ORYSJ (Q8LIF2), C89A9_ARATH (Q9SRQ1), CATA_ASPFU (P78574), CY212_POSPM (F1SYH4), CY219_POSPM (F1SYI1), HR78_DROME (Q24142), MMS1_YEAST (Q06211), MNMG_MYCM1 (Q6KID6), MSHMT_AMISX (B2DEU8), MYSP_BRUMA (Q01202), MYSP_CAEEL (P10567), MYSP_ONCVO (Q02171)» more |
| PDB [Detailed view] |
24 PDB
1AJK; 1AJO; 1AXK; 1BYH; 1CPM; 1CPN; 1DYP; 1GBG; 1GLH; 1MAC; 1MVE; 1UMZ; 1UN1; 1ZM1; 2AYH; 2R49; 3AXD; 3AXE; 3D6E; 3H0O; 3HR9; 3O5S; 3WVJ; 4ATE » more |