PROSITE entry PS01037
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General information about the entry
Entry name [info] | SBP_BACTERIAL_1 |
Accession [info] | PS01037 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00796 |
Name and characterization of the entry
Description [info] | Bacterial extracellular solute-binding proteins, family 1 signature. |
Pattern [info] |
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)- [LIVMF]-x-[KNDE]. |
Numerical results [info]
Total number of hits | 52 in 52 different sequences |
Number of true positive hits | 39 in 39 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 13 in 13 different sequences |
Number of false negative sequences | 53 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 75.00 % |
Recall (true positives / (true positives + false negatives)) | 42.39 % |
Comments [info]
Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
39 sequences
FBPA_HAEIN (P35755 ), FBPA_NEIMA (P0A0Y3 ), FBPA_NEIMB (P0A0Y4 ), FBPA_SERMA (P21408 ), FBP_NEIGO (P17259 ), MALE_ECO57 (P0AEY0 ), MALE_ECOLI (P0AEX9 ), MALE_KLEAE (P18815 ), MALE_PYRAB (Q9V297 ), MALE_PYRFU (P58300 ), MALE_SALTY (P19576 ), MALX_STRPN (P59213 ), MALX_STRR6 (P59214 ), MSME_STRMU (Q00749 ), THIB_ECOLI (P31550 ), THIB_HAEIN (P44984 ), THIB_SALTY (Q7CR85 ), UGPB_ECO57 (P0AG81 ), UGPB_ECOK1 (A1AGY4 ), UGPB_ECOL5 (Q0TC07 ), UGPB_ECOL6 (Q8CVL9 ), UGPB_ECOLI (P0AG80 ), UGPB_ECOUT (Q1R5H5 ), UGPB_PECAS (Q6CZ31 ), UGPB_SALCH (Q57IS0 ), UGPB_SALPA (Q5PJK8 ), UGPB_SALTI (Q8XG55 ), UGPB_SALTY (Q7CPK0 ), UGPB_SHIDS (Q32AT3 ), UGPB_SHIF8 (Q0SZL9 ), UGPB_SHIFL (Q83PU5 ), UGPB_YERE8 (A1JID7 ), UGPB_YERPA (Q1CBH5 ), UGPB_YERPE (Q7CKV7 ), UGPB_YERPN (Q1CNC9 ), UGPB_YERPS (Q66FU7 ), Y2784_BRUAB (Q578M8 ), Y2991_BRUA2 (Q2YKZ9 ), Y3748_BRUSU (Q8FVS7 )» more
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UniProtKB/Swiss-Prot False negative sequences |
53 sequences
AGLE_RHIME (Q9Z3R5 ), ARAN_BACSU (P94528 ), ARAN_HALH5 (Q9KEE7 ), DASA_STRCO (Q9K491 ), FUTA1_SYNY3 (P72827 ), FUTA2_SYNY3 (Q55835 ), GABBP_PSEAE (Q9I6R6 ), GANS_BACSU (O07009 ), GLCS_SACS2 (Q97UZ1 ), IDIA_SYNE7 (Q31L64 ), IDIA_SYNP6 (Q5N0R0 ), IDIA_THEVB (Q8DLH9 ), LACE_RHIRD (P29822 ), LPQY_MYCT3 (G7CES0 ), LPQY_MYCTO (P9WGU8 ), LPQY_MYCTU (P9WGU9 ), MANBP_PSEAE (Q9I1E0 ), MDXE_BACSU (O06989 ), MELE_BACSU (O34335 ), NGCE_STRCO (O50499 ), P5217_PSEAE (Q9HTX3 ), PAGBP_PSEAE (Q9I0P5 ), PCABP_PSEAE (Q9HY16 ), PHND_MYCS2 (A0QQ71 ), PHNS_SALCH (Q57SD5 ), PHNS_SALPA (Q5PFQ8 ), PHNS_SALTI (Q8Z8W7 ), PHNS_SALTY (P96062 ), SBP92_STRPN (A0A0H2UMY0), SP39_BRUAB (O06875 ), SP39_BRUME (Q8YCE2 ), SP39_BRUSU (Q8FVX5 ), SP39_RHILO (Q98H33 ), SP39_RHIME (Q92KZ7 ), THIB_BRUA2 (Q2YLW8 ), THIB_BRUAB (Q57BC4 ), THIB_BRUME (Q8YJ02 ), THIB_BRUSU (Q8FYV1 ), UE38_DEIRA (Q9RUE8 ), UGPB_AGRFC (Q8UB32 ), UGPB_BRUA2 (Q2YKR5 ), UGPB_BRUAB (Q578E6 ), UGPB_BRUME (Q8YCA7 ), UGPB_BRUSU (Q8FW10 ), UGPB_RHIME (Q926H8 ), XACG_HALVD (D4GP35 ), Y1039_PYRHO (O58758 ), Y1214_PYRHO (O58969 ), Y4OP_SINFN (P55601 ), YCJN_ECOLI (P76042 ), YESO_BACSU (O31518 ), YTCQ_BACSU (Q795R2 ), YURO_BACSU (O32156 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
MALE_KLEPN (Q05564 ), MALE_PHOLU (P41130 ) |
UniProtKB/Swiss-Prot False positive sequences |
13 sequences
CG031_MOUSE (Q9D5Y0 ), EPTA_HELPY (O24867 ), FIB37_BPK3 (Q38394 ), HEM1_GEOKA (Q5KWK4 ), HEM1_GEOTN (A4IRG7 ), HEM1_SOLUE (Q022E5 ), HUM6_CAEBR (Q622K8 ), MYO7A_AEDAE (Q17LW0 ), MYO7A_DROME (Q9V3Z6 ), MYO7A_DROPS (Q29P71 ), RT29_BOVIN (P82922 ), TINCR_HUMAN (A0A2R8Y7D0), VATB_HYPBU (A2BKX5 )» more |
PDB [Detailed view] |
389 PDB
1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2MV0; 2N44; 2N45; 2NVU; 2O68; 2O69; 2O6A; 2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 3CSB; 3CSG; 3D4C; 3D4G; 3DM0; 3EF7; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3J9P; 3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 3N93; 3N94; 3N95; 3N96; 3O3U; 3OAI; 3OB4; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 3VFJ; 3W15; 3WAI; 3WOA; 4AQ4; 4B3N; 4BL8; 4BL9; 4BLA; 4BLB; 4BLD; 4DXB; 4DXC; 4EDQ; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4IFP; 4IKM; 4IRL; 4JBZ; 4JKM; 4KEG; 4KHZ; 4KI0; 4KV3; 4KYC; 4KYD; 4KYE; 4LOG; 4MBP; 4MY2; 4N4X; 4NDZ; 4NUF; 4O2X; 4OGM; 4PE2; 4PQK; 4QSZ; 4QVH; 4R0Y; 4RG5; 4RWF; 4RWG; 4TSM; 4WGI; 4WJV; 4WMS; 4WMT; 4WMU; 4WMV; 4WMW; 4WMX; 4WRN; 4WTH; 4WVG; 4WVH; 4WVI; 4WVJ; 4XA2; 4XAI; 4XAJ; 4XHS; 4XR8; 4XZS; 4XZV; 4YS9; 5AQ9; 5AZ6; 5AZ7; 5AZ8; 5AZ9; 5AZA; 5B3W; 5B3X; 5B3Y; 5B3Z; 5BK1; 5BK2; 5C7R; 5CBN; 5CFV; 5CL1; 5DFM; 5DIS; 5E24; 5E7U; 5EDU; 5FIO; 5FSG; 5GRU; 5GS2; 5GXT; 5GXV; 5H7N; 5H7Q; 5HZ7; 5HZV; 5HZW; 5I04; 5I69; 5IHJ; 5II5; 5IIC; 5IQZ; 5JJ4; 5JON; 5JST; 5LDF; 5LOF; 5M13; 5M14; 5M15; 5MM3; 5OSQ; 5T03; 5T05; 5T0A; 5TTD; 5VAW; 5WPZ; 5WQ6; 5Y2G; 5YGP; 5YGS; 5Z0R; 5Z0V; 5ZCA; 5ZNY; 5ZNZ; 6APX; 6CXS; 6D65; 6D66; 6D67; 6DM8; 6EQZ; 6HD8; 6HD9; 6HDA; 6HDB; 6HDC; 6I4Y; 6K7D; 6K7E; 6K7F; 6KEA; 6KI0; 6KXG; 6L0Z; 6L3E; 6LES; 6LF3; 6M4V; 6M4W; 6N84; 6NDJ; 6OB5; 6P6W; 6QUG; 6QYK; 6QYL; 6QYN; 6QYO; 6QZ7; 6SIV; 6SJA; 6SLM; 6SMV; 6SWR; 6TZC; 6USM; 6V2E; 6VLS; 6WBH; 6WBJ; 6WGZ; 6X84; 6XDS; 6XRX; 6YBJ; 6YBK; 6YBL; 6YSN; 6ZHO; 7B01; 7BG0; 7BXT; 7BY0; 7CY4; 7CY5; 7CY6; 7CY7; 7CY8; 7DD9; 7DDE; 7E29; 7FBB; 7FBC; 7FBD; 7FFT; 7FFW; 7JHG; 7JHH; 7JIJ; 7JTR; 7K48; 7KD4; 7M74; 7MHW; 7MK7; 7MN5; 7MN6; 7MN8; 7MQ6; 7MQ7; 7NZM; 7O2W; 7OMT; 7P0F; 7P0I; 7P1G; 7P1H; 7RJ5; 7RW6; 7T31; 7TSZ; 7TT0; 7TT1; 7TT2; 7TT3; 7TT4; 7TT5; 7TT6; 7TT7; 7VGQ; 7VH1; 7VQO; 7Z7H » more |