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PROSITE entry PS01037


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PURL: https://purl.expasy.org/prosite/signature/PS01037

Direct ScanProsite submission
General information about the entry

Entry name [info] SBP_BACTERIAL_1
Accession [info] PS01037
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00796

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 1 signature.
Pattern [info] 
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-
[LIVMF]-x-[KNDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 52 in 52 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 53
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 75.00 %
Recall (true positives / (true positives + false negatives)) 42.39 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 39 sequences 

FBPA_HAEIN  (P35755), FBPA_NEIMA  (P0A0Y3), FBPA_NEIMB  (P0A0Y4), 

FBPA_SERMA  (P21408), FBP_NEIGO   (P17259), MALE_ECO57  (P0AEY0), 
MALE_ECOLI  (P0AEX9), MALE_KLEAE  (P18815), MALE_PYRAB  (Q9V297), 
MALE_PYRFU  (P58300), MALE_SALTY  (P19576), MALX_STRPN  (P59213), 
MALX_STRR6  (P59214), MSME_STRMU  (Q00749), THIB_ECOLI  (P31550), 
THIB_HAEIN  (P44984), THIB_SALTY  (Q7CR85), UGPB_ECO57  (P0AG81), 
UGPB_ECOK1  (A1AGY4), UGPB_ECOL5  (Q0TC07), UGPB_ECOL6  (Q8CVL9), 
UGPB_ECOLI  (P0AG80), UGPB_ECOUT  (Q1R5H5), UGPB_PECAS  (Q6CZ31), 
UGPB_SALCH  (Q57IS0), UGPB_SALPA  (Q5PJK8), UGPB_SALTI  (Q8XG55), 
UGPB_SALTY  (Q7CPK0), UGPB_SHIDS  (Q32AT3), UGPB_SHIF8  (Q0SZL9), 
UGPB_SHIFL  (Q83PU5), UGPB_YERE8  (A1JID7), UGPB_YERPA  (Q1CBH5), 
UGPB_YERPE  (Q7CKV7), UGPB_YERPN  (Q1CNC9), UGPB_YERPS  (Q66FU7), 
Y2784_BRUAB (Q578M8), Y2991_BRUA2 (Q2YKZ9), Y3748_BRUSU (Q8FVS7)
» more

UniProtKB/Swiss-Prot
False negative sequences		 53 sequences 

AGLE_RHIME  (Q9Z3R5), ARAN_BACSU  (P94528), ARAN_HALH5  (Q9KEE7), 

DASA_STRCO  (Q9K491), FUTA1_SYNY3 (P72827), FUTA2_SYNY3 (Q55835), 
GABBP_PSEAE (Q9I6R6), GANS_BACSU  (O07009), GLCS_SACS2  (Q97UZ1), 
IDIA_SYNE7  (Q31L64), IDIA_SYNP6  (Q5N0R0), IDIA_THEVB  (Q8DLH9), 
LACE_RHIRD  (P29822), LPQY_MYCT3  (G7CES0), LPQY_MYCTO  (P9WGU8), 
LPQY_MYCTU  (P9WGU9), MANBP_PSEAE (Q9I1E0), MDXE_BACSU  (O06989), 
MELE_BACSU  (O34335), NGCE_STRCO  (O50499), P5217_PSEAE (Q9HTX3), 
PAGBP_PSEAE (Q9I0P5), PCABP_PSEAE (Q9HY16), PHND_MYCS2  (A0QQ71), 
PHNS_SALCH  (Q57SD5), PHNS_SALPA  (Q5PFQ8), PHNS_SALTI  (Q8Z8W7), 
PHNS_SALTY  (P96062), SBP92_STRPN (A0A0H2UMY0), SP39_BRUAB  (O06875), 
SP39_BRUME  (Q8YCE2), SP39_BRUSU  (Q8FVX5), SP39_RHILO  (Q98H33), 
SP39_RHIME  (Q92KZ7), THIB_BRUA2  (Q2YLW8), THIB_BRUAB  (Q57BC4), 
THIB_BRUME  (Q8YJ02), THIB_BRUSU  (Q8FYV1), UE38_DEIRA  (Q9RUE8), 
UGPB_AGRFC  (Q8UB32), UGPB_BRUA2  (Q2YKR5), UGPB_BRUAB  (Q578E6), 
UGPB_BRUME  (Q8YCA7), UGPB_BRUSU  (Q8FW10), UGPB_RHIME  (Q926H8), 
XACG_HALVD  (D4GP35), Y1039_PYRHO (O58758), Y1214_PYRHO (O58969), 
Y4OP_SINFN  (P55601), YCJN_ECOLI  (P76042), YESO_BACSU  (O31518), 
YTCQ_BACSU  (Q795R2), YURO_BACSU  (O32156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

MALE_KLEPN  (Q05564), MALE_PHOLU  (P41130)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			13 sequences
			


			
AATB_HYPBU  (A2BKX5), EPTA_HELPY  (O24867), FIB37_BPK3  (Q38394), 

			
HEM1_GEOKA  (Q5KWK4), HEM1_GEOTN  (A4IRG7), HEM1_SOLUE  (Q022E5), 
HUM6_CAEBR  (Q622K8), MYO7A_AEDAE (Q17LW0), MYO7A_DROME (Q9V3Z6), 
MYO7A_DROPS (Q29P71), RT29_BOVIN  (P82922), SMIP4_MOUSE (Q9D5Y0), 
TINCR_HUMAN (A0A2R8Y7D0)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			495 PDB
			


			pdb_00001a7l; pdb_00001anf; pdb_00001d9v; pdb_00001dmb; pdb_00001elj; pdb_00001ez9; pdb_00001ezo; pdb_00001ezp; pdb_00001fqa; pdb_00001fqb; pdb_00001fqc; pdb_00001fqd; 
			
				pdb_00001hsj; pdb_00001iud; pdb_00001jvx; pdb_00001jvy; pdb_00001jw4; pdb_00001jw5; pdb_00001lax; pdb_00001lls; pdb_00001mdp; pdb_00001mdq; pdb_00001mg1; pdb_00001mh3; 
				pdb_00001mh4; pdb_00001mpb; pdb_00001mpc; pdb_00001mpd; pdb_00001mrp; pdb_00001n3w; pdb_00001n3x; pdb_00001nl5; pdb_00001nmu; pdb_00001nnf; pdb_00001omp; pdb_00001peb; 
				pdb_00001qvs; pdb_00001qw0; pdb_00001r1n; pdb_00001r6z; pdb_00001svx; pdb_00001t0k; pdb_00001xc1; pdb_00001xvy; pdb_00001y4c; pdb_00001ytv; pdb_00001ziu; pdb_00001zjl; 
				pdb_00001zkb; pdb_00001zmg; pdb_00002d21; pdb_00002h25; pdb_00002klf; pdb_00002mv0; pdb_00002n44; pdb_00002n45; pdb_00002nvu; pdb_00002o68; pdb_00002o69; pdb_00002o6a; 
				pdb_00002obg; pdb_00002ok2; pdb_00002qry; pdb_00002r6g; pdb_00002v93; pdb_00002vgq; pdb_00002xd2; pdb_00002xd3; pdb_00002xz3; pdb_00002zxt; pdb_00003a3c; pdb_00003c4m; 
				pdb_00003csb; pdb_00003csg; pdb_00003d4c; pdb_00003d4g; pdb_00003dm0; pdb_00003ef7; pdb_00003ehs; pdb_00003eht; pdb_00003ehu; pdb_00003f5f; pdb_00003g7v; pdb_00003g7w; 
				pdb_00003h3g; pdb_00003h4z; pdb_00003hpi; pdb_00003hst; pdb_00003io4; pdb_00003io6; pdb_00003ior; pdb_00003iot; pdb_00003iou; pdb_00003iov; pdb_00003iow; pdb_00003j9p; 
				pdb_00003jyr; pdb_00003kjt; pdb_00003kn7; pdb_00003kn8; pdb_00003l2j; pdb_00003lbs; pdb_00003lc8; pdb_00003mbp; pdb_00003mp1; pdb_00003mp6; pdb_00003mp8; pdb_00003mq9; 
				pdb_00003n93; pdb_00003n94; pdb_00003n95; pdb_00003n96; pdb_00003o3u; pdb_00003oai; pdb_00003ob4; pdb_00003od7; pdb_00003odb; pdb_00003osq; pdb_00003osr; pdb_00003pgf; 
				pdb_00003puv; pdb_00003puw; pdb_00003pux; pdb_00003puy; pdb_00003puz; pdb_00003pv0; pdb_00003py7; pdb_00003q25; pdb_00003q26; pdb_00003q27; pdb_00003q28; pdb_00003q29; 
				pdb_00003rlf; pdb_00003rum; pdb_00003ser; pdb_00003ses; pdb_00003set; pdb_00003seu; pdb_00003sev; pdb_00003sew; pdb_00003sex; pdb_00003sey; pdb_00003tyh; pdb_00003vd8; 
				pdb_00003vfj; pdb_00003w15; pdb_00003wai; pdb_00003woa; pdb_00004aq4; pdb_00004b3n; pdb_00004bl8; pdb_00004bl9; pdb_00004bla; pdb_00004blb; pdb_00004bld; pdb_00004dxb; 
				pdb_00004dxc; pdb_00004edq; pdb_00004egc; pdb_00004exk; pdb_00004fe8; pdb_00004feb; pdb_00004fec; pdb_00004fed; pdb_00004giz; pdb_00004gli; pdb_00004ifp; pdb_00004ikm; 
				pdb_00004irl; pdb_00004jbz; pdb_00004jkm; pdb_00004keg; pdb_00004khz; pdb_00004ki0; pdb_00004kv3; pdb_00004kyc; pdb_00004kyd; pdb_00004kye; pdb_00004log; pdb_00004mbp; 
				pdb_00004my2; pdb_00004n4x; pdb_00004ndz; pdb_00004nuf; pdb_00004o2x; pdb_00004ogm; pdb_00004pe2; pdb_00004pqk; pdb_00004qsz; pdb_00004qvh; pdb_00004r0y; pdb_00004rg5; 
				pdb_00004rwf; pdb_00004rwg; pdb_00004tsm; pdb_00004wgi; pdb_00004wjv; pdb_00004wms; pdb_00004wmt; pdb_00004wmu; pdb_00004wmv; pdb_00004wmw; pdb_00004wmx; pdb_00004wrn; 
				pdb_00004wth; pdb_00004wvg; pdb_00004wvh; pdb_00004wvi; pdb_00004wvj; pdb_00004xa2; pdb_00004xai; pdb_00004xaj; pdb_00004xhs; pdb_00004xr8; pdb_00004xzs; pdb_00004xzv; 
				pdb_00004ys9; pdb_00005aq9; pdb_00005az6; pdb_00005az7; pdb_00005az8; pdb_00005az9; pdb_00005aza; pdb_00005b3w; pdb_00005b3x; pdb_00005b3y; pdb_00005b3z; pdb_00005bjz; 
				pdb_00005bk1; pdb_00005bk2; pdb_00005bmy; pdb_00005c7r; pdb_00005cbn; pdb_00005cfv; pdb_00005cl1; pdb_00005dfm; pdb_00005dis; pdb_00005e24; pdb_00005e7u; pdb_00005edu; 
				pdb_00005fio; pdb_00005fsg; pdb_00005gpp; pdb_00005gpq; pdb_00005gru; pdb_00005gs2; pdb_00005gxt; pdb_00005gxv; pdb_00005h7n; pdb_00005h7q; pdb_00005hz7; pdb_00005hzv; 
				pdb_00005hzw; pdb_00005i04; pdb_00005i69; pdb_00005ihj; pdb_00005ii5; pdb_00005iic; pdb_00005iqz; pdb_00005jj4; pdb_00005jon; pdb_00005jst; pdb_00005ldf; pdb_00005lel; 
				pdb_00005lem; pdb_00005lof; pdb_00005m13; pdb_00005m14; pdb_00005m15; pdb_00005mm3; pdb_00005osq; pdb_00005t03; pdb_00005t05; pdb_00005t0a; pdb_00005ttd; pdb_00005v6y; 
				pdb_00005vaw; pdb_00005w0r; pdb_00005w0u; pdb_00005w0z; pdb_00005w1c; pdb_00005wpz; pdb_00005wq6; pdb_00005y2g; pdb_00005ygp; pdb_00005ygs; pdb_00005z0r; pdb_00005z0v; 
				pdb_00005zca; pdb_00005zny; pdb_00005znz; pdb_00006anv; pdb_00006apx; pdb_00006buz; pdb_00006cxs; pdb_00006d1u; pdb_00006d65; pdb_00006d66; pdb_00006d67; pdb_00006dd5; 
				pdb_00006dks; pdb_00006dm8; pdb_00006eg2; pdb_00006eg3; pdb_00006eqz; pdb_00006hd8; pdb_00006hd9; pdb_00006hda; pdb_00006hdb; pdb_00006hdc; pdb_00006i4y; pdb_00006k7d; 
				pdb_00006k7e; pdb_00006k7f; pdb_00006kea; pdb_00006ki0; pdb_00006kxg; pdb_00006l0z; pdb_00006l3e; pdb_00006les; pdb_00006lf3; pdb_00006m4v; pdb_00006m4w; pdb_00006n84; 
				pdb_00006n85; pdb_00006ndj; pdb_00006ob5; pdb_00006p6w; pdb_00006qgd; pdb_00006qug; pdb_00006qxj; pdb_00006qyk; pdb_00006qyl; pdb_00006qyn; pdb_00006qyo; pdb_00006qz7; 
				pdb_00006siv; pdb_00006sja; pdb_00006slm; pdb_00006smv; pdb_00006swr; pdb_00006tzc; pdb_00006usm; pdb_00006v2e; pdb_00006vls; pdb_00006wbh; pdb_00006wbj; pdb_00006wgz; 
				pdb_00006x84; pdb_00006xds; pdb_00006xrx; pdb_00006ybj; pdb_00006ybk; pdb_00006ybl; pdb_00006ysn; pdb_00006zho; pdb_00007b01; pdb_00007bg0; pdb_00007bxt; pdb_00007by0; 
				pdb_00007cy4; pdb_00007cy5; pdb_00007cy6; pdb_00007cy7; pdb_00007cy8; pdb_00007dd9; pdb_00007dde; pdb_00007e29; pdb_00007fbb; pdb_00007fbc; pdb_00007fbd; pdb_00007fft; 
				pdb_00007ffw; pdb_00007jhg; pdb_00007jhh; pdb_00007jij; pdb_00007jtr; pdb_00007k48; pdb_00007kd4; pdb_00007m74; pdb_00007mhw; pdb_00007mk7; pdb_00007mn5; pdb_00007mn6; 
				pdb_00007mn8; pdb_00007mq6; pdb_00007mq7; pdb_00007nzm; pdb_00007o2w; pdb_00007omm; pdb_00007omt; pdb_00007p0f; pdb_00007p0i; pdb_00007p1g; pdb_00007p1h; pdb_00007rj5; 
				pdb_00007rw6; pdb_00007t31; pdb_00007tsz; pdb_00007tt0; pdb_00007tt1; pdb_00007tt2; pdb_00007tt3; pdb_00007tt4; pdb_00007tt5; pdb_00007tt6; pdb_00007tt7; pdb_00007u0g; 
				pdb_00007u0i; pdb_00007uaj; pdb_00007vgq; pdb_00007vh1; pdb_00007vqo; pdb_00007w3z; pdb_00007w40; pdb_00007wr3; pdb_00007xmn; pdb_00007xqc; pdb_00007y5q; pdb_00007z7h; 
				pdb_00008ag0; pdb_00008ax5; pdb_00008ax6; pdb_00008ax7; pdb_00008ax8; pdb_00008ax9; pdb_00008c8f; pdb_00008cdy; pdb_00008ce0; pdb_00008cr9; pdb_00008crb; pdb_00008dei; 
				pdb_00008dx4; pdb_00008ekx; pdb_00008el0; pdb_00008el1; pdb_00008fne; pdb_00008fv5; pdb_00008g8w; pdb_00008gcr; pdb_00008h68; pdb_00008hgh; pdb_00008hlb; pdb_00008iiy; 
				pdb_00008iiz; pdb_00008ji0; pdb_00008jyx; pdb_00008qso; pdb_00008sbu; pdb_00008soj; pdb_00008sok; pdb_00008sqa; pdb_00008sqb; pdb_00008svy; pdb_00008t2i; pdb_00008t6f; 
				pdb_00008tlv; pdb_00008tlw; pdb_00008tlx; pdb_00008tnp; pdb_00008tnq; pdb_00008tnr; pdb_00008vg0; pdb_00008vg1; pdb_00008vrs; pdb_00008x7v; pdb_00008x7w; pdb_00008ybe; 
				pdb_00008zhs; pdb_00008zmr; pdb_00008zms; pdb_00008zqe; pdb_00009bcg; pdb_00009bde; pdb_00009boi; pdb_00009cer; pdb_00009ces; pdb_00009cet; pdb_00009ceu; pdb_00009cev; 
				pdb_00009cew; pdb_00009cex; pdb_00009cey; pdb_00009cez; pdb_00009cf0; pdb_00009cf1; pdb_00009cf2; pdb_00009cf3; pdb_00009clc; pdb_00009cld; pdb_00009dh3; pdb_00009hdo; 
				pdb_00009hdp; pdb_00009hdq; pdb_00009hdr
			
			

			» more