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Entry: PS01039 |
Entry name [info] | SBP_BACTERIAL_3 |
Accession [info] | PS01039 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00798 |
Description [info] | Bacterial extracellular solute-binding proteins, family 3 signature. |
Pattern [info] |
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}- {GL}-[LIVMAGN]. |
Total number of hits | 67 in 67 different sequences |
Number of true positive hits | 38 in 38 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 29 in 29 different sequences |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 56.72 % |
Recall (true positives / (true positives + false negatives)) | 84.44 % |
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
38 sequences
AABA_DICNO (P39906 ), AAPJ_RHIL3 (Q52812 ), ARGT_ECOLI (P09551 ), ARGT_SALTY (P02911 ), ARTI_ECOLI (P30859 ), ARTI_HAEIN (P45091 ), ARTJ_ECOLI (P30860 ), ARTP_BACSU (P54535 ), GLNH_BACSU (O34563 ), GLNH_ECO57 (P0AEQ5 ), GLNH_ECOL6 (P0AEQ4 ), GLNH_ECOLI (P0AEQ3 ), GLNH_GEOSE (P27676 ), GLUB_COREF (Q8RQL6 ), GLUB_CORGL (P48242 ), HISJ_CAMJE (Q46125 ), HISJ_ECO57 (P0AEU2 ), HISJ_ECOL6 (P0AEU1 ), HISJ_ECOLI (P0AEU0 ), HISJ_NEIGO (Q06758 ), HISJ_SALTY (P02910 ), LAPT_MANHA (P49618 ), NOCT_AGRFC (P35120 ), OCCT_AGRT4 (P0A4F9 ), OCCT_RHIML (P72298 ), OCCT_RHIRD (P0A4F8 ), PATH_VIBHA (P52626 ), PEB1A_CAMJE (Q0P9X8 ), PEB1A_CAMJJ (A1VZQ4 ), PHEC_PSEAE (Q01269 ), TCYA_BACSU (P42199 ), TCYJ_ECOL6 (P0AEN0 ), TCYJ_ECOLI (P0AEM9 ), Y1080_HAEIN (P45024 ), YCKB_BACSU (P42400 ), YHDW_ECO57 (P58068 ), YHDW_ECOLI (P45766 ), YXEM_BACSU (P54952 )» more
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UniProtKB/Swiss-Prot False negative sequences |
7 sequences
ARTJ_CHLTR (O84385 ), BZTA_RHOCB (Q52663 ), GLTI_ECOLI (P37902 ), GLTI_SALTY (Q9ZF60 ), TCYJ_BACSU (O34406 ), TCYK_BACSU (O34852 ), Y4TE_SINFN (P55659 )» more |
UniProtKB/Swiss-Prot False positive sequences |
29 sequences
DCL3_ARATH (Q9LXW7 ), ECHD2_BOVIN (Q2TBT3 ), HIS61_PROMM (Q7V8Q8 ), HIS6_CARHZ (Q3AD48 ), HIS6_METKA (Q8TYW8 ), HIS6_NOSS1 (Q8YT31 ), HIS6_PROMT (Q46GY9 ), HIS6_PYRAE (Q8ZY16 ), HIS6_SACS2 (O33774 ), HIS6_SYNP6 (Q5N0H4 ), HIS6_THEEB (Q8DJN7 ), HIS6_TRIV2 (Q3MEF5 ), HIS6_ZYMMO (Q5NMD6 ), HP251_BOVIN (Q2KIX7 ), MDTB_XENBS (D3V7P3 ), MURG_PSYIN (A1SU19 ), MUTS_BRADU (Q89VX1 ), MUTS_NITHX (Q1QQJ4 ), MUTS_NITWN (Q3SVD4 ), MUTS_RHOPS (Q13ED0 ), PHNN_SALAR (A9MGI9 ), SSUB2_XANAC (Q8PHQ3 ), SYA_NITHX (Q1QMV7 ), SYFB_METAC (Q8TPF7 ), SYFB_METMA (Q8PTA5 ), Y2481_CLOTE (Q891A0 ), Y3156_SHESM (Q0HFE0 ), Y3815_SHEON (Q8EAS7 ), Y811_SHESR (Q0HYJ5 )» more |
PDB [Detailed view] |
42 PDB
1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 3KBR; 4P0I; 4POW; 4POX; 4PP0; 5HPQ; 5ITO; 5ITP; 5ORE; 5ORG; 5OT8; 5OT9; 5OTA; 5OTC; 5OVZ; 5OWF; 6FT2; 6MKU; 6MKW; 6MKX; 6ML0; 6MLA; 6MLD; 6MLE; 6MLG; 6MLI; 6MLJ; 6MLN; 6MLO; 6MLP; 6MLV » more |