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Entry: PS01039

General information about the entry

Entry name [info] SBP_BACTERIAL_3
Accession [info] PS01039
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00798

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info] 
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}-
{GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 67 in 67 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 29 in 29 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 56.72 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 38 sequences 

AABA_DICNO  (P39906    ), AAPJ_RHIL3  (Q52812    ), ARGT_ECOLI  (P09551    ), 

ARGT_SALTY  (P02911    ), ARTI_ECOLI  (P30859    ), ARTI_HAEIN  (P45091    ), 
ARTJ_ECOLI  (P30860    ), ARTP_BACSU  (P54535    ), GLNH_BACSU  (O34563    ), 
GLNH_ECO57  (P0AEQ5    ), GLNH_ECOL6  (P0AEQ4    ), GLNH_ECOLI  (P0AEQ3    ), 
GLNH_GEOSE  (P27676    ), GLUB_COREF  (Q8RQL6    ), GLUB_CORGL  (P48242    ), 
HISJ_CAMJE  (Q46125    ), HISJ_ECO57  (P0AEU2    ), HISJ_ECOL6  (P0AEU1    ), 
HISJ_ECOLI  (P0AEU0    ), HISJ_NEIGO  (Q06758    ), HISJ_SALTY  (P02910    ), 
LAPT_MANHA  (P49618    ), NOCT_AGRFC  (P35120    ), OCCT_AGRT4  (P0A4F9    ), 
OCCT_RHIML  (P72298    ), OCCT_RHIRD  (P0A4F8    ), PATH_VIBHA  (P52626    ), 
PEB1A_CAMJE (Q0P9X8    ), PEB1A_CAMJJ (A1VZQ4    ), PHEC_PSEAE  (Q01269    ), 
TCYA_BACSU  (P42199    ), TCYJ_ECOL6  (P0AEN0    ), TCYJ_ECOLI  (P0AEM9    ), 
Y1080_HAEIN (P45024    ), YCKB_BACSU  (P42400    ), YHDW_ECO57  (P58068    ), 
YHDW_ECOLI  (P45766    ), YXEM_BACSU  (P54952    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

ARTJ_CHLTR  (O84385    ), BZTA_RHOCB  (Q52663    ), GLTI_ECOLI  (P37902    ), 

GLTI_SALTY  (Q9ZF60    ), TCYJ_BACSU  (O34406    ), TCYK_BACSU  (O34852    ), 
Y4TE_SINFN  (P55659    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 29 sequences 

DCL3_ARATH  (Q9LXW7    ), ECHD2_BOVIN (Q2TBT3    ), HIS61_PROMM (Q7V8Q8    ), 

HIS6_CARHZ  (Q3AD48    ), HIS6_METKA  (Q8TYW8    ), HIS6_NOSS1  (Q8YT31    ), 
HIS6_PROMT  (Q46GY9    ), HIS6_PYRAE  (Q8ZY16    ), HIS6_SACS2  (O33774    ), 
HIS6_SYNP6  (Q5N0H4    ), HIS6_THEEB  (Q8DJN7    ), HIS6_TRIV2  (Q3MEF5    ), 
HIS6_ZYMMO  (Q5NMD6    ), HP251_BOVIN (Q2KIX7    ), MDTB_XENBS  (D3V7P3    ), 
MURG_PSYIN  (A1SU19    ), MUTS_BRADU  (Q89VX1    ), MUTS_NITHX  (Q1QQJ4    ), 
MUTS_NITWN  (Q3SVD4    ), MUTS_RHOPS  (Q13ED0    ), PHNN_SALAR  (A9MGI9    ), 
SSUB2_XANAC (Q8PHQ3    ), SYA_NITHX   (Q1QMV7    ), SYFB_METAC  (Q8TPF7    ), 
SYFB_METMA  (Q8PTA5    ), Y2481_CLOTE (Q891A0    ), Y3156_SHESM (Q0HFE0    ), 
Y3815_SHEON (Q8EAS7    ), Y811_SHESR  (Q0HYJ5    )
» more

PDB
[Detailed view]		 42 PDB

1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 3KBR; 4P0I; 4POW; 4POX; 4PP0; 5HPQ; 5ITO; 5ITP; 5ORE; 5ORG; 5OT8; 5OT9; 5OTA; 5OTC; 5OVZ; 5OWF; 6FT2; 6MKU; 6MKW; 6MKX; 6ML0; 6MLA; 6MLD; 6MLE; 6MLG; 6MLI; 6MLJ; 6MLN; 6MLO; 6MLP; 6MLV
» more

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