PROSITE entry PS01039

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	SBP_BACTERIAL_3
Accession [info]	PS01039
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00798

Name and characterization of the entry

Description [info]	Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info]	G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}- {GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	69 in 69 different sequences
Number of true positive hits	39 in 39 different sequences
Number of 'unknown' hits	0
Number of false positive hits	30 in 30 different sequences
Number of false negative sequences	8
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	56.52 %
Recall (true positives / (true positives + false negatives))	82.98 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	39 sequences AABA_DICNO (P39906), AAPJ_RHIL3 (Q52812), ARGBP_PSEAE (G3XD47), ARGT_ECOLI (P09551), ARGT_SALTY (P02911), ARTI_ECOLI (P30859), ARTI_HAEIN (P45091), ARTJ_ECOLI (P30860), ARTP_BACSU (P54535), GLNH_BACSU (O34563), GLNH_ECO57 (P0AEQ5), GLNH_ECOL6 (P0AEQ4), GLNH_ECOLI (P0AEQ3), GLNH_GEOSE (P27676), GLUB_COREF (Q8RQL6), GLUB_CORGL (P48242), HISJ_CAMJE (Q46125), HISJ_ECO57 (P0AEU2), HISJ_ECOL6 (P0AEU1), HISJ_ECOLI (P0AEU0), HISJ_NEIGO (Q06758), HISJ_SALTY (P02910), LAPT_MANHA (P49618), NOCT_AGRFC (P35120), OCCT_AGRT4 (P0A4F9), OCCT_RHIML (P72298), OCCT_RHIRD (P0A4F8), PATH_VIBHA (P52626), PEB1A_CAMJE (Q0P9X8), PEB1A_CAMJJ (A1VZQ4), PHEC_PSEAE (Q01269), TCYA_BACSU (P42199), TCYJ_ECOL6 (P0AEN0), TCYJ_ECOLI (P0AEM9), Y1080_HAEIN (P45024), YCKB_BACSU (P42400), YHDW_ECO57 (P58068), YHDW_ECOLI (P45766), YXEM_BACSU (P54952) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	8 sequences ARTJ_CHLTR (O84385), BZTA_RHOCB (Q52663), GASBP_PSEAE (Q9I402), GLTI_ECOLI (P37902), GLTI_SALTY (Q9ZF60), TCYJ_BACSU (O34406), TCYK_BACSU (O34852), Y4TE_SINFN (P55659) » more
UniProtKB/Swiss-Prot False positive sequences	30 sequences DCL3_ARATH (Q9LXW7), ECHD2_BOVIN (Q2TBT3), HIS61_PROMM (Q7V8Q8), HIS6_CARHZ (Q3AD48), HIS6_METKA (Q8TYW8), HIS6_NOSS1 (Q8YT31), HIS6_PROMT (Q46GY9), HIS6_PYRAE (Q8ZY16), HIS6_SACS2 (O33774), HIS6_SYNP6 (Q5N0H4), HIS6_THEVB (Q8DJN7), HIS6_TRIV2 (Q3MEF5), HIS6_ZYMMO (Q5NMD6), HP251_BOVIN (Q2KIX7), MDTB_XENBS (D3V7P3), MURG_PSYIN (A1SU19), MUTS_BRADU (Q89VX1), MUTS_NITHX (Q1QQJ4), MUTS_NITWN (Q3SVD4), MUTS_RHOPS (Q13ED0), PHNN_SALAR (A9MGI9), PLA2_CAEEL (Q20500), SSUB2_XANAC (Q8PHQ3), SYA_NITHX (Q1QMV7), SYFB_METAC (Q8TPF7), SYFB_METMA (Q8PTA5), Y2481_CLOTE (Q891A0), Y3156_SHESM (Q0HFE0), Y3815_SHEON (Q8EAS7), Y811_SHESR (Q0HYJ5) » more
PDB [Detailed view]	42 PDB 1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 3KBR; 4P0I; 4POW; 4PP0; 5HPQ; 5ITO; 5ITP; 5ORE; 5ORG; 5OT8; 5OT9; 5OTA; 5OTC; 5OVZ; 5OWF; 6FT2; 6MKU; 6MKW; 6MKX; 6ML0; 6MLA; 6MLD; 6MLE; 6MLG; 6MLI; 6MLJ; 6MLN; 6MLO; 6MLP; 6MLV; 6XKS » more