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Amos Bairoch

PROSITE entry PS01040


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PURL: https://purl.expasy.org/prosite/signature/PS01040

Direct ScanProsite submission
General information about the entry

Entry name [info] SBP_BACTERIAL_5
Accession [info] PS01040
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-JUL-1999 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00799

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 5 signature.
Pattern [info] 
[AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]-
[KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 22
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 68.57 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 48 sequences 

ALIA_STRPN  (P35592), ALIB_STRPN  (P0A4G0), ALIB_STRR6  (P0A4G1), 

AMIA_STRPN  (P18791), APPA_BACSU  (P42061), CNTA_STAA8  (Q2FVE7), 
CNTA_STAAM  (A0A0H3JTL0), DDPA_ECOLI  (P76128), DIPBP_PSEAE (Q9HVS1), 
DPPA1_PSEAB (A0A0H2ZGV2), DPPA3_PSEAB (A0A0H2ZGN2), DPPA_ECOLI  (P23847), 
DPPA_LACLM  (A2RI74), DPPE_BACSU  (P26906), GSIB_ECO57  (Q8X6V9), 
GSIB_ECOK1  (A1A968), GSIB_ECOL5  (Q0TJL8), GSIB_ECOL6  (Q8CW88), 
GSIB_ECOLI  (P75797), GSIB_ECOUT  (Q1RE95), GSIB_SALCH  (Q57RB1), 
GSIB_SHIBS  (Q323W4), GSIB_SHIDS  (Q32IB6), GSIB_SHIF8  (Q0T6D2), 
GSIB_SHIFL  (Q821B3), GSIB_SHISS  (Q3Z3V3), HBPA_HAEIN  (P33950), 
MPPA_ECOLI  (P77348), NIKA_ECOLI  (P33590), OPPA_BACSU  (P24141), 
OPPA_ECOLI  (P23843), OPPA_HAEIN  (P71370), OPPA_LACLA  (Q9CEK0), 
OPPA_LACLL  (Q07741), OPPA_LACLS  (Q02VA9), OPPA_SALTY  (P06202), 
SAPA_ECOLI  (Q47622), SAPA_HAEIN  (P45285), SAPA_SALTY  (P36634), 
SARA_STRGC  (P31306), UF71_DEIRA  (Q9RU24), XP55_STRLI  (P06109), 
Y1030_BRUAB (Q8VQK3), Y1049_BRUA2 (Q2YJK2), Y1090_BRUSU (Q8FUX2), 
Y210_BRUME  (Q8YDG6), Y213_HAEIN  (P44572), Y4TO_SINFN  (P55669)
» more

UniProtKB/Swiss-Prot
False negative sequences		 22 sequences 

AGPA_RHIME  (Q9X4Y1), DPPA2_PSEAB (A0A0H2ZGW2), DPPA4_PSEAB (A0A0H2ZGV7), 

DPPA5_PSEAB (A0A0H2ZI72), GSIB_PECAS  (Q6D3B0), GSIB_SALPA  (Q5PGP4), 
GSIB_SALTI  (Q8Z863), GSIB_SALTY  (Q8ZQM3), NIKA_STAA8  (Q2G2P5), 
OPPA_MYCBO  (P66772), OPPA_MYCTO  (P9WGU4), OPPA_MYCTU  (P9WGU5), 
TRPBP_PSEAE (Q9HVS4), Y2948_BRUAB (Q577X5), Y3164_BRUA2 (Q2YKJ5), 
Y3576_BRUSU (Q8FW84), Y3691_BRUME (Q8YC41), Y4WM_SINFN  (P55691), 
YEJA_AGRFC  (A9CKL4), YEPA_AGRFC  (A9CIN5), YGIS_ECOLI  (Q46863), 
YHJP_BACSU  (O07570)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

OPPA_LACLC  (P0C2B3)


				
	

	

		PDB
[Detailed view]		
		
			85 PDB
			


			pdb_00001b05; pdb_00001b0h; pdb_00001b1h; pdb_00001b2h; pdb_00001b32; pdb_00001b3f; pdb_00001b3g; pdb_00001b3h; pdb_00001b3l; pdb_00001b40; pdb_00001b46; pdb_00001b4h; 
			
				pdb_00001b4z; pdb_00001b51; pdb_00001b52; pdb_00001b58; pdb_00001b5h; pdb_00001b5i; pdb_00001b5j; pdb_00001b6h; pdb_00001b7h; pdb_00001b9j; pdb_00001dpe; pdb_00001dpp; 
				pdb_00001jet; pdb_00001jeu; pdb_00001jev; pdb_00001ola; pdb_00001olc; pdb_00001qka; pdb_00001qkb; pdb_00001rkm; pdb_00001uiu; pdb_00001uiv; pdb_00001uqw; pdb_00001xoc; 
				pdb_00001zlq; pdb_00002noo; pdb_00002olb; pdb_00002rkm; pdb_00003dp8; pdb_00003e3k; pdb_00003mvw; pdb_00003mvx; pdb_00003mvy; pdb_00003mvz; pdb_00003mw0; pdb_00003mz9; 
				pdb_00003mzb; pdb_00003o9p; pdb_00003qim; pdb_00003tcf; pdb_00003tcg; pdb_00003tch; pdb_00004dcx; pdb_00004dcy; pdb_00004i8c; pdb_00004i9d; pdb_00004toz; pdb_00005l8d; 
				pdb_00005mwu; pdb_00005on0; pdb_00005on1; pdb_00005on4; pdb_00005on5; pdb_00005on8; pdb_00005on9; pdb_00005yh5; pdb_00005yh8; pdb_00005yhe; pdb_00005yhg; pdb_00006r4q; 
				pdb_00007a0c; pdb_00008a42; pdb_00008are; pdb_00008arn; pdb_00008ay0; pdb_00008azb; pdb_00008qlj; pdb_00008qlk; pdb_00008qlm; pdb_00008qlv; pdb_00008qm0; pdb_00008spm; 
				pdb_00008z1y
			
			

			» more