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PROSITE entry PS01040


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General information about the entry

Entry name [info] SBP_BACTERIAL_5
Accession [info] PS01040
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-JUL-1999 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00799

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 5 signature.
Pattern [info] 
[AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]-
[KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 22
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 68.57 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 48 sequences 

ALIA_STRPN  (P35592), ALIB_STRPN  (P0A4G0), ALIB_STRR6  (P0A4G1), 

AMIA_STRPN  (P18791), APPA_BACSU  (P42061), CNTA_STAA8  (Q2FVE7), 
CNTA_STAAM  (A0A0H3JTL0), DDPA_ECOLI  (P76128), DIPBP_PSEAE (Q9HVS1), 
DPPA1_PSEAB (A0A0H2ZGV2), DPPA3_PSEAB (A0A0H2ZGN2), DPPA_ECOLI  (P23847), 
DPPA_LACLM  (A2RI74), DPPE_BACSU  (P26906), GSIB_ECO57  (Q8X6V9), 
GSIB_ECOK1  (A1A968), GSIB_ECOL5  (Q0TJL8), GSIB_ECOL6  (Q8CW88), 
GSIB_ECOLI  (P75797), GSIB_ECOUT  (Q1RE95), GSIB_SALCH  (Q57RB1), 
GSIB_SHIBS  (Q323W4), GSIB_SHIDS  (Q32IB6), GSIB_SHIF8  (Q0T6D2), 
GSIB_SHIFL  (Q821B3), GSIB_SHISS  (Q3Z3V3), HBPA_HAEIN  (P33950), 
MPPA_ECOLI  (P77348), NIKA_ECOLI  (P33590), OPPA_BACSU  (P24141), 
OPPA_ECOLI  (P23843), OPPA_HAEIN  (P71370), OPPA_LACLA  (Q9CEK0), 
OPPA_LACLL  (Q07741), OPPA_LACLS  (Q02VA9), OPPA_SALTY  (P06202), 
SAPA_ECOLI  (Q47622), SAPA_HAEIN  (P45285), SAPA_SALTY  (P36634), 
SARA_STRGC  (P31306), UF71_DEIRA  (Q9RU24), XP55_STRLI  (P06109), 
Y1030_BRUAB (Q8VQK3), Y1049_BRUA2 (Q2YJK2), Y1090_BRUSU (Q8FUX2), 
Y210_BRUME  (Q8YDG6), Y213_HAEIN  (P44572), Y4TO_SINFN  (P55669)
» more

UniProtKB/Swiss-Prot
False negative sequences		 22 sequences 

AGPA_RHIME  (Q9X4Y1), DPPA2_PSEAB (A0A0H2ZGW2), DPPA4_PSEAB (A0A0H2ZGV7), 

DPPA5_PSEAB (A0A0H2ZI72), GSIB_PECAS  (Q6D3B0), GSIB_SALPA  (Q5PGP4), 
GSIB_SALTI  (Q8Z863), GSIB_SALTY  (Q8ZQM3), NIKA_STAA8  (Q2G2P5), 
TRPBP_PSEAE (Q9HVS4), Y1280_MYCTO (P9WGU4), Y1280_MYCTU (P9WGU5), 
Y1311_MYCBO (P66772), Y2948_BRUAB (Q577X5), Y3164_BRUA2 (Q2YKJ5), 
Y3576_BRUSU (Q8FW84), Y3691_BRUME (Q8YC41), Y4WM_SINFN  (P55691), 
YEJA_AGRFC  (A9CKL4), YEPA_AGRFC  (A9CIN5), YGIS_ECOLI  (Q46863), 
YHJP_BACSU  (O07570)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

OPPA_LACLC  (P0C2B3)


				
	

	

		PDB
[Detailed view]		
		
			78 PDB
			


			1B05; 1B0H; 1B1H; 1B2H; 1B32; 1B3F; 1B3G; 1B3H; 1B3L; 1B40; 1B46; 1B4H; 
			
				1B4Z; 1B51; 1B52; 1B58; 1B5H; 1B5I; 1B5J; 1B6H; 1B7H; 1B9J; 1DPE; 1DPP; 
				1JET; 1JEU; 1JEV; 1OLA; 1OLC; 1QKA; 1QKB; 1RKM; 1UIU; 1UIV; 1UQW; 1XOC; 
				1ZLQ; 2NOO; 2OLB; 2RKM; 3DP8; 3E3K; 3MVW; 3MVX; 3MVY; 3MVZ; 3MW0; 3MZ9; 
				3MZB; 3O9P; 3QIM; 3TCF; 3TCG; 3TCH; 4DCX; 4DCY; 4I8C; 4I9D; 4TOZ; 5L8D; 
				5MWU; 5ON0; 5ON1; 5ON4; 5ON5; 5ON8; 5ON9; 5YH5; 5YH8; 5YHE; 5YHG; 6R4Q; 
				7A0C; 8A42; 8ARE; 8ARN; 8AY0; 8AZB
			
			

			» more