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Entry: PS01040

General information about the entry

Entry name [info] SBP_BACTERIAL_5
Accession [info] PS01040
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-JUL-1999 DATA UPDATE;
22-APR-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00799

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 5 signature.
Pattern [info] 
[AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]-
[KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_02 which contains 562'253 sequence entries.


Total number of hits 44 in 44 different sequences
Number of true positive hits 44 in 44 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 16
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.33 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 44 sequences 

ALIA_STRPN  (P35592    ), ALIB_STRPN  (P0A4G0    ), ALIB_STRR6  (P0A4G1    ), 

AMIA_STRPN  (P18791    ), APPA_BACSU  (P42061    ), CNTA_STAA8  (Q2FVE7    ), 
CNTA_STAAM  (A0A0H3JTL0), DDPA_ECOLI  (P76128    ), DPPA_ECOLI  (P23847    ), 
DPPE_BACSU  (P26906    ), GSIB_ECO57  (Q8X6V9    ), GSIB_ECOK1  (A1A968    ), 
GSIB_ECOL5  (Q0TJL8    ), GSIB_ECOL6  (Q8CW88    ), GSIB_ECOLI  (P75797    ), 
GSIB_ECOUT  (Q1RE95    ), GSIB_SALCH  (Q57RB1    ), GSIB_SHIBS  (Q323W4    ), 
GSIB_SHIDS  (Q32IB6    ), GSIB_SHIF8  (Q0T6D2    ), GSIB_SHIFL  (Q821B3    ), 
GSIB_SHISS  (Q3Z3V3    ), HBPA_HAEIN  (P33950    ), MPPA_ECOLI  (P77348    ), 
NIKA_ECOLI  (P33590    ), OPPA_BACSU  (P24141    ), OPPA_ECOLI  (P23843    ), 
OPPA_HAEIN  (P71370    ), OPPA_LACLA  (Q9CEK0    ), OPPA_LACLL  (Q07741    ), 
OPPA_LACLS  (Q02VA9    ), OPPA_SALTY  (P06202    ), SAPA_ECOLI  (Q47622    ), 
SAPA_HAEIN  (P45285    ), SAPA_SALTY  (P36634    ), SARA_STRGC  (P31306    ), 
UF71_DEIRA  (Q9RU24    ), XP55_STRLI  (P06109    ), Y1030_BRUAB (Q8VQK3    ), 
Y1049_BRUA2 (Q2YJK2    ), Y1090_BRUSU (Q8FUX2    ), Y210_BRUME  (Q8YDG6    ), 
Y213_HAEIN  (P44572    ), Y4TO_SINFN  (P55669    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 16 sequences 

AGPA_RHIME  (Q9X4Y1    ), GSIB_PECAS  (Q6D3B0    ), GSIB_SALPA  (Q5PGP4    ), 

GSIB_SALTI  (Q8Z863    ), GSIB_SALTY  (Q8ZQM3    ), NIKA_STAA8  (Q2G2P5    ), 
Y1280_MYCTO (P9WGU4    ), Y1280_MYCTU (P9WGU5    ), Y1311_MYCBO (P66772    ), 
Y2948_BRUAB (Q577X5    ), Y3164_BRUA2 (Q2YKJ5    ), Y3576_BRUSU (Q8FW84    ), 
Y3691_BRUME (Q8YC41    ), Y4WM_SINFN  (P55691    ), YGIS_ECOLI  (Q46863    ), 
YHJP_BACSU  (O07570    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

OPPA_LACLC  (P0C2B3    )


				
	

	

		PDB
[Detailed view]		
		
			71 PDB
			


			1B05; 1B0H; 1B1H; 1B2H; 1B32; 1B3F; 1B3G; 1B3H; 1B3L; 1B40; 1B46; 1B4H; 
			
				1B4Z; 1B51; 1B52; 1B58; 1B5H; 1B5I; 1B5J; 1B6H; 1B7H; 1B9J; 1DPE; 1DPP; 
				1JET; 1JEU; 1JEV; 1OLA; 1OLC; 1QKA; 1QKB; 1RKM; 1UIU; 1UIV; 1UQW; 1XOC; 
				1ZLQ; 2NOO; 2OLB; 2RKM; 3DP8; 3E3K; 3MVW; 3MVX; 3MVY; 3MVZ; 3MW0; 3MZ9; 
				3MZB; 3O9P; 3QIM; 3TCF; 3TCG; 3TCH; 4DCX; 4DCY; 4I8C; 4I9D; 4TOZ; 5L8D; 
				5MWU; 5ON0; 5ON1; 5ON4; 5ON5; 5ON8; 5ON9; 5YH5; 5YH8; 5YHE; 5YHG
			
			

			» more

				
	





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