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Entry: PS01044

General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_1
Accession [info] PS01044
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-NOV-1997 DATA UPDATE;
22-APR-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 1.
Pattern [info] 
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_02 which contains 562'253 sequence entries.


Total number of hits 75 in 75 different sequences
Number of true positive hits 72 in 72 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 96.00 %
Recall (true positives / (true positives + false negatives)) 84.71 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 72 sequences 

BSS_BOTBR   (Q9SDW9    ), CRTB_ENTAG  (D5KXJ0    ), CRTB_MYCBO  (P65861    ), 

CRTB_MYCTO  (P9WHP2    ), CRTB_MYCTU  (P9WHP3    ), CRTB_PANAN  (P21683    ), 
CRTB_PARSN  (P54975    ), CRTB_PSEVU  (P22872    ), CRTB_RHOCB  (P17056    ), 
CRTB_RHOS4  (P54905    ), CRTB_STRGR  (P54977    ), CRTB_SYNE7  (P37269    ), 
CRTB_SYNY3  (P37294    ), CRTB_THET2  (P37270    ), CRTM_STAA3  (Q2FDU5    ), 
CRTM_STAA8  (Q2FV59    ), CRTM_STAAB  (Q2YWE7    ), CRTM_STAAC  (Q5HCY8    ), 
CRTM_STAAE  (O07854    ), CRTM_STAAM  (Q99R75    ), CRTM_STAAN  (Q7A3E1    ), 
CRTM_STAAS  (Q6G6B2    ), CRTM_STAAU  (A9JQL9    ), CRTM_STAAW  (Q8NUQ5    ), 
CRTM_STAHJ  (Q4L976    ), CRTY_ARTPT  (O07333    ), FDFT1_ARATH (P53799    ), 
FDFT_ASHGO  (Q752X9    ), FDFT_BOVIN  (Q32KR6    ), FDFT_CANAX  (P78589    ), 
FDFT_CANGA  (Q9HGZ6    ), FDFT_CYBJA  (O74165    ), FDFT_DICDI  (Q54DR1    ), 
FDFT_HUMAN  (P37268    ), FDFT_MOUSE  (P53798    ), FDFT_NEUCR  (Q7S4Z6    ), 
FDFT_NICBE  (P53800    ), FDFT_PONAB  (Q5R6U3    ), FDFT_RAT    (Q02769    ), 
FDFT_SCHPO  (P36596    ), FDFT_USTMA  (Q92459    ), FDFT_YARLI  (Q9Y753    ), 
FDFT_YEAST  (P29704    ), HPND_RHOPA  (Q6N3F2    ), HPND_SINFN  (P55350    ), 
HPND_ZYMMO  (H2VFR7    ), LCPS_COLGM  (E3Q717    ), LCPS_NEUCR  (P37295    ), 
LCPS_SORMK  (D1Z4K7    ), LCPS_SPORE  (E6ZZ11    ), LCPS_USTMA  (Q4P0S6    ), 
MFR6_PHOSM  (A0A3G1DJL2), PSY1_MAIZE  (P49085    ), PSY1_ORYSJ  (Q5Z5B7    ), 
PSY1_SOLLC  (P08196    ), PSY2_SOLLC  (P37273    ), PSY3_MAIZE  (B0KZ40    ), 
PSY_ARATH   (P37271    ), PSY_CAPAN   (P37272    ), PSY_CUCME   (P49293    ), 
PSY_DAUCA   (Q9SSU8    ), PSY_NARPS   (P53797    ), PSY_ONCHC   (Q52QW5    ), 
SLSS_SOLLC  (D0VFU8    ), SQS10_PANGI (A0A1P7Y0A2), SQS11_PANGI (A0A1P7Y0D4), 
SQS12_PANGI (A0A1P7Y0A8), SQS13_PANGI (A0A1P7Y0D0), SQS1_PANGI  (O48666    ), 
SQS2_PANGI  (C9E894    ), SQS3_PANGI  (D2K762    ), SQS8_PANGI  (A0A1P7Y0C9)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

BOCS_BOTBR  (G0Y288    ), BOSS_BOTBR  (G0Y287    ), CRIT_STRCO  (Q9ACU1    ), 

HPNC_RHOPA  (Q6N3F1    ), HPNC_SINFN  (P55351    ), HPNC_ZYMMO  (Q5NP67    ), 
LCPS_MUCCL  (Q9UUQ6    ), LOS_BOTBR   (A0A142ZC57), LSS_BOTBR   (A0A144YEA5), 
PSDS_BOTBR  (G0Y286    ), PSY2_MAIZE  (Q6EI12    ), PSY2_ORYSJ  (Q2QLV9    ), 
YISP_BACSU  (O06728    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

GEL4_ASPFC  (B0XVI5    ), GEL4_ASPFU  (P0C956    ), HEXA_PSEO7  (P48823    )


				
	

	

		PDB
[Detailed view]		
		
			49 PDB
			


			1EZF; 2ZCO; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; 
			
				3NPR; 3Q2Z; 3Q30; 3TFN; 3TFP; 3TFV; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 
				3VJD; 3VJE; 3W7F; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 
				3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA; 4E9U; 4E9Z; 4EA0; 4EA1; 4EA2; 4F6V; 
				4F6X
			
			

			» more

				
	





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