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PROSITE entry PS01044


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General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_1
Accession [info] PS01044
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-NOV-1997 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 1.
Pattern [info] 
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 76 in 76 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 96.20 %
Recall (true positives / (true positives + false negatives)) 85.39 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 76 sequences 

BSS_BOTBR   (Q9SDW9), CLZ20_COCLU (A0A345BJQ0), CRTB_CERS4  (P54905), 

CRTB_ENTAG  (D5KXJ0), CRTB_MYCBO  (P65861), CRTB_MYCTO  (P9WHP2), 
CRTB_MYCTU  (P9WHP3), CRTB_PANAN  (P21683), CRTB_PARSN  (P54975), 
CRTB_PSEVU  (P22872), CRTB_RHOCB  (P17056), CRTB_STRGR  (P54977), 
CRTB_SYNE7  (P37269), CRTB_SYNY3  (P37294), CRTB_THET2  (P37270), 
CRTM_STAA3  (Q2FDU5), CRTM_STAA8  (Q2FV59), CRTM_STAAB  (Q2YWE7), 
CRTM_STAAC  (Q5HCY8), CRTM_STAAE  (O07854), CRTM_STAAM  (Q99R75), 
CRTM_STAAN  (Q7A3E1), CRTM_STAAS  (Q6G6B2), CRTM_STAAU  (A9JQL9), 
CRTM_STAAW  (Q8NUQ5), CRTM_STAHJ  (Q4L976), CRTY_ARTPT  (O07333), 
ERG9_ASPFU  (Q4WAG4), ERG9_CANAL  (A0A1D8PI71), ERG9_CANAX  (P78589), 
ERG9_GIBZE  (V6RPN0), ERG9_SCHPO  (P36596), ERG9_YEAST  (P29704), 
FDFT1_ARATH (P53799), FDFT_BOVIN  (Q32KR6), FDFT_CANGA  (Q9HGZ6), 
FDFT_CYBJA  (O74165), FDFT_DICDI  (Q54DR1), FDFT_EREGS  (Q752X9), 
FDFT_HUMAN  (P37268), FDFT_MOUSE  (P53798), FDFT_NEUCR  (Q7S4Z6), 
FDFT_NICBE  (P53800), FDFT_PONAB  (Q5R6U3), FDFT_RAT(Q02769), 
FDFT_USTMA  (Q92459), FDFT_YARLI  (Q9Y753), HPND_RHOPA  (Q6N3F2), 
HPND_SINFN  (P55350), HPND_ZYMMO  (H2VFR7), LCPS_COLGM  (E3Q717), 
LCPS_NEUCR  (P37295), LCPS_SORMK  (D1Z4K7), LCPS_SPORE  (E6ZZ11), 
LCPS_USTMA  (Q4P0S6), MFR6_PHOSM  (A0A3G1DJL2), PSY1_MAIZE  (P49085), 
PSY1_ORYSJ  (Q5Z5B7), PSY1_SOLLC  (P08196), PSY2_SOLLC  (P37273), 
PSY3_MAIZE  (B0KZ40), PSY_ARATH   (P37271), PSY_CAPAN   (P37272), 
PSY_CUCME   (P49293), PSY_DAUCA   (Q9SSU8), PSY_NARPS   (P53797), 
PSY_ONCHC   (Q52QW5), SLSS_SOLLC  (D0VFU8), SQS10_PANGI (A0A1P7Y0A2), 
SQS11_PANGI (A0A1P7Y0D4), SQS12_PANGI (A0A1P7Y0A8), SQS13_PANGI (A0A1P7Y0D0), 
SQS1_PANGI  (O48666), SQS2_PANGI  (C9E894), SQS3_PANGI  (D2K762), 
SQS8_PANGI  (A0A1P7Y0C9)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

BOCS_BOTBR  (G0Y288), BOSS_BOTBR  (G0Y287), CRIT_STRCO  (Q9ACU1), 

HPNC_RHOPA  (Q6N3F1), HPNC_SINFN  (P55351), HPNC_ZYMMO  (Q5NP67), 
LCPS_MUCCL  (Q9UUQ6), LOS_BOTBR   (A0A142ZC57), LSS_BOTBR   (A0A144YEA5), 
PSDS_BOTBR  (G0Y286), PSY2_MAIZE  (Q6EI12), PSY2_ORYSJ  (Q2QLV9), 
YISP_BACSU  (O06728)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

GEL4_ASPFC  (B0XVI5), GEL4_ASPFU  (P0C956), HEXA_PSEO7  (P48823)


				
	

	

		PDB
[Detailed view]		
		
			49 PDB
			


			1EZF; 2ZCO; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; 
			
				3NPR; 3Q2Z; 3Q30; 3TFN; 3TFP; 3TFV; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 
				3VJD; 3VJE; 3W7F; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 
				3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA; 4E9U; 4E9Z; 4EA0; 4EA1; 4EA2; 4F6V; 
				4F6X
			
			

			» more