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| Entry: PS01044 |
General information about the entry
| Entry name [info] | SQUALEN_PHYTOEN_SYN_1 |
| Accession [info] | PS01044 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-NOV-1997 DATA UPDATE; 02-JUN-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00802 |
Name and characterization of the entry
| Description [info] | Squalene and phytoene synthases signature 1. |
| Pattern [info] |
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV]. |
Numerical results [info]
| Total number of hits | 76 in 76 different sequences |
| Number of true positive hits | 73 in 73 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 3 in 3 different sequences |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 96.05 % |
| Recall (true positives / (true positives + false negatives)) | 84.88 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
73 sequences
BSS_BOTBR (Q9SDW9 ), CLZ20_COCLU (A0A345BJQ0), CRTB_ENTAG (D5KXJ0 ), CRTB_MYCBO (P65861 ), CRTB_MYCTO (P9WHP2 ), CRTB_MYCTU (P9WHP3 ), CRTB_PANAN (P21683 ), CRTB_PARSN (P54975 ), CRTB_PSEVU (P22872 ), CRTB_RHOCB (P17056 ), CRTB_RHOS4 (P54905 ), CRTB_STRGR (P54977 ), CRTB_SYNE7 (P37269 ), CRTB_SYNY3 (P37294 ), CRTB_THET2 (P37270 ), CRTM_STAA3 (Q2FDU5 ), CRTM_STAA8 (Q2FV59 ), CRTM_STAAB (Q2YWE7 ), CRTM_STAAC (Q5HCY8 ), CRTM_STAAE (O07854 ), CRTM_STAAM (Q99R75 ), CRTM_STAAN (Q7A3E1 ), CRTM_STAAS (Q6G6B2 ), CRTM_STAAU (A9JQL9 ), CRTM_STAAW (Q8NUQ5 ), CRTM_STAHJ (Q4L976 ), CRTY_ARTPT (O07333 ), FDFT1_ARATH (P53799 ), FDFT_ASHGO (Q752X9 ), FDFT_BOVIN (Q32KR6 ), FDFT_CANAX (P78589 ), FDFT_CANGA (Q9HGZ6 ), FDFT_CYBJA (O74165 ), FDFT_DICDI (Q54DR1 ), FDFT_HUMAN (P37268 ), FDFT_MOUSE (P53798 ), FDFT_NEUCR (Q7S4Z6 ), FDFT_NICBE (P53800 ), FDFT_PONAB (Q5R6U3 ), FDFT_RAT (Q02769 ), FDFT_SCHPO (P36596 ), FDFT_USTMA (Q92459 ), FDFT_YARLI (Q9Y753 ), FDFT_YEAST (P29704 ), HPND_RHOPA (Q6N3F2 ), HPND_SINFN (P55350 ), HPND_ZYMMO (H2VFR7 ), LCPS_COLGM (E3Q717 ), LCPS_NEUCR (P37295 ), LCPS_SORMK (D1Z4K7 ), LCPS_SPORE (E6ZZ11 ), LCPS_USTMA (Q4P0S6 ), MFR6_PHOSM (A0A3G1DJL2), PSY1_MAIZE (P49085 ), PSY1_ORYSJ (Q5Z5B7 ), PSY1_SOLLC (P08196 ), PSY2_SOLLC (P37273 ), PSY3_MAIZE (B0KZ40 ), PSY_ARATH (P37271 ), PSY_CAPAN (P37272 ), PSY_CUCME (P49293 ), PSY_DAUCA (Q9SSU8 ), PSY_NARPS (P53797 ), PSY_ONCHC (Q52QW5 ), SLSS_SOLLC (D0VFU8 ), SQS10_PANGI (A0A1P7Y0A2), SQS11_PANGI (A0A1P7Y0D4), SQS12_PANGI (A0A1P7Y0A8), SQS13_PANGI (A0A1P7Y0D0), SQS1_PANGI (O48666 ), SQS2_PANGI (C9E894 ), SQS3_PANGI (D2K762 ), SQS8_PANGI (A0A1P7Y0C9)» more
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| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
BOCS_BOTBR (G0Y288 ), BOSS_BOTBR (G0Y287 ), CRIT_STRCO (Q9ACU1 ), HPNC_RHOPA (Q6N3F1 ), HPNC_SINFN (P55351 ), HPNC_ZYMMO (Q5NP67 ), LCPS_MUCCL (Q9UUQ6 ), LOS_BOTBR (A0A142ZC57), LSS_BOTBR (A0A144YEA5), PSDS_BOTBR (G0Y286 ), PSY2_MAIZE (Q6EI12 ), PSY2_ORYSJ (Q2QLV9 ), YISP_BACSU (O06728 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
3 sequences
GEL4_ASPFC (B0XVI5 ), GEL4_ASPFU (P0C956 ), HEXA_PSEO7 (P48823 ) |
| PDB [Detailed view] |
49 PDB
1EZF; 2ZCO; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; 3NPR; 3Q2Z; 3Q30; 3TFN; 3TFP; 3TFV; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3VJD; 3VJE; 3W7F; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA; 4E9U; 4E9Z; 4EA0; 4EA1; 4EA2; 4F6V; 4F6X » more |
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