PROSITE entry PS01045
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General information about the entry
| Entry name [info] | SQUALEN_PHYTOEN_SYN_2 |
| Accession [info] | PS01045 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00802 |
Name and characterization of the entry
| Description [info] | Squalene and phytoene synthases signature 2. |
| Pattern [info] |
[LIVM]-G-x(3)-Q-x(2,3)-[ND]-[IFL]-x-[RE]-D-[LIVMFY]-x(2)-[DE]-x(4,7)-R-x- [FY]-x-P. |
Numerical results [info]
| Total number of hits | 83 in 83 different sequences |
| Number of true positive hits | 83 in 83 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 18 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 82.18 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
83 sequences
BSS_BOTBR (Q9SDW9), CLZ20_COCLU (A0A345BJQ0), CRIT_STRCO (Q9ACU1), CRTB_CERS4 (P54905), CRTB_ENTAG (D5KXJ0), CRTB_MYCBO (P65861), CRTB_MYCTO (P9WHP2), CRTB_MYCTU (P9WHP3), CRTB_PANAN (P21683), CRTB_PARSN (P54975), CRTB_PSEVU (P22872), CRTB_RHOCB (P17056), CRTB_STRGR (P54977), CRTB_SYNE7 (P37269), CRTB_SYNY3 (P37294), CRTB_THET2 (P37270), CRTY_ARTPT (O07333), ERG9_ASPFU (Q4WAG4), ERG9_CANAL (A0A1D8PI71), ERG9_CANAX (P78589), ERG9_GANLU (A0SJQ5), ERG9_SCHPO (P36596), ERG9_YEAST (P29704), FDFT1_ARATH (P53799), FDFT_ASHGO (Q752X9), FDFT_BOVIN (Q32KR6), FDFT_CANGA (Q9HGZ6), FDFT_CYBJA (O74165), FDFT_DICDI (Q54DR1), FDFT_HUMAN (P37268), FDFT_MOUSE (P53798), FDFT_NEUCR (Q7S4Z6), FDFT_NICBE (P53800), FDFT_PONAB (Q5R6U3), FDFT_RAT(Q02769), FDFT_USTMA (Q92459), FDFT_YARLI (Q9Y753), HPND_RHOPA (Q6N3F2), HPND_SINFN (P55350), HPND_ZYMMO (H2VFR7), LCPS_ARTGP (E4UPP6), LCPS_BLATR (Q67GH9), LCPS_COLGM (E3Q717), LCPS_GIBF5 (S0EQ07), LCPS_GIBFU (Q8X0Z1), LCPS_LEPMJ (E4ZUB5), LCPS_MUCCL (Q9UUQ6), LCPS_NEUCR (P37295), LCPS_PHANO (Q0V6M5), LCPS_PHARH (Q7Z859), LCPS_PHYB8 (Q9P854), LCPS_PODAN (B2ATB0), LCPS_PYRTR (B2WAQ3), LCPS_SORMK (D1Z4K7), LCPS_SPORE (E6ZZ11), LCPS_TRIVH (D4D802), LCPS_USTMA (Q4P0S6), LOS_BOTBR (A0A142ZC57), LSS_BOTBR (A0A144YEA5), MFR6_PHOSM (A0A3G1DJL2), PSY1_MAIZE (P49085), PSY1_ORYSJ (Q5Z5B7), PSY1_SOLLC (P08196), PSY2_MAIZE (Q6EI12), PSY2_ORYSJ (Q2QLV9), PSY2_SOLLC (P37273), PSY3_MAIZE (B0KZ40), PSY3_ORYSJ (B6UV92), PSY_ARATH (P37271), PSY_CAPAN (P37272), PSY_CUCME (P49293), PSY_DAUCA (Q9SSU8), PSY_NARPS (P53797), PSY_ONCHC (Q52QW5), SLSS_SOLLC (D0VFU8), SQS10_PANGI (A0A1P7Y0A2), SQS11_PANGI (A0A1P7Y0D4), SQS12_PANGI (A0A1P7Y0A8), SQS13_PANGI (A0A1P7Y0D0), SQS1_PANGI (O48666), SQS2_PANGI (C9E894), SQS3_PANGI (D2K762), SQS8_PANGI (A0A1P7Y0C9)» more
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| UniProtKB/Swiss-Prot False negative sequences |
18 sequences
BOCS_BOTBR (G0Y288), BOSS_BOTBR (G0Y287), CRTM_STAA3 (Q2FDU5), CRTM_STAA8 (Q2FV59), CRTM_STAAB (Q2YWE7), CRTM_STAAC (Q5HCY8), CRTM_STAAE (O07854), CRTM_STAAM (Q99R75), CRTM_STAAN (Q7A3E1), CRTM_STAAS (Q6G6B2), CRTM_STAAU (A9JQL9), CRTM_STAAW (Q8NUQ5), CRTM_STAHJ (Q4L976), HPNC_RHOPA (Q6N3F1), HPNC_SINFN (P55351), HPNC_ZYMMO (Q5NP67), PSDS_BOTBR (G0Y286), YISP_BACSU (O06728)» more |
| PDB [Detailed view] |
26 PDB
1EZF; 3ASX; 3LEE; 3Q2Z; 3Q30; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA » more |