PROSITE entry PS01045
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | SQUALEN_PHYTOEN_SYN_2 |
| Accession [info] | PS01045 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00802 |
Name and characterization of the entry
| Description [info] | Squalene and phytoene synthases signature 2. |
| Pattern [info] |
[LIVM]-G-x(3)-Q-x(2,3)-[ND]-[IFL]-x-[RE]-D-[LIVMFY]-x(2)-[DE]-x(4,7)-R-x- [FY]-x-P. |
Numerical results [info]
| Total number of hits | 83 in 83 different sequences |
| Number of true positive hits | 83 in 83 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 18 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 82.18 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
83 sequences
BSS_BOTBR (Q9SDW9), CLZ20_COCLU (A0A345BJQ0), CRIT_STRCO (Q9ACU1), CRTB_CERS4 (P54905), CRTB_ENTAG (D5KXJ0), CRTB_MYCBO (P65861), CRTB_MYCTO (P9WHP2), CRTB_MYCTU (P9WHP3), CRTB_PANAN (P21683), CRTB_PARSN (P54975), CRTB_PSEVU (P22872), CRTB_RHOCB (P17056), CRTB_STRGR (P54977), CRTB_SYNE7 (P37269), CRTB_SYNY3 (P37294), CRTB_THET2 (P37270), CRTY_ARTPT (O07333), ERG9_ASPFU (Q4WAG4), ERG9_CANAL (A0A1D8PI71), ERG9_CANAX (P78589), ERG9_GANLU (A0SJQ5), ERG9_SCHPO (P36596), ERG9_YEAST (P29704), FDFT1_ARATH (P53799), FDFT_BOVIN (Q32KR6), FDFT_CANGA (Q9HGZ6), FDFT_CYBJA (O74165), FDFT_DICDI (Q54DR1), FDFT_EREGS (Q752X9), FDFT_HUMAN (P37268), FDFT_MOUSE (P53798), FDFT_NEUCR (Q7S4Z6), FDFT_NICBE (P53800), FDFT_PONAB (Q5R6U3), FDFT_RAT(Q02769), FDFT_USTMA (Q92459), FDFT_YARLI (Q9Y753), HPND_RHOPA (Q6N3F2), HPND_SINFN (P55350), HPND_ZYMMO (H2VFR7), LCPS_ARTGP (E4UPP6), LCPS_BLATR (Q67GH9), LCPS_COLGM (E3Q717), LCPS_GIBF5 (S0EQ07), LCPS_GIBFU (Q8X0Z1), LCPS_LEPMJ (E4ZUB5), LCPS_MUCCL (Q9UUQ6), LCPS_NEUCR (P37295), LCPS_PHANO (Q0V6M5), LCPS_PHARH (Q7Z859), LCPS_PHYB8 (Q9P854), LCPS_PODAN (B2ATB0), LCPS_PYRTR (B2WAQ3), LCPS_SORMK (D1Z4K7), LCPS_SPORE (E6ZZ11), LCPS_TRIVH (D4D802), LCPS_USTMA (Q4P0S6), LOS_BOTBR (A0A142ZC57), LSS_BOTBR (A0A144YEA5), MFR6_PHOSM (A0A3G1DJL2), PSY1_MAIZE (P49085), PSY1_ORYSJ (Q5Z5B7), PSY1_SOLLC (P08196), PSY2_MAIZE (Q6EI12), PSY2_ORYSJ (Q2QLV9), PSY2_SOLLC (P37273), PSY3_MAIZE (B0KZ40), PSY3_ORYSJ (B6UV92), PSY_ARATH (P37271), PSY_CAPAN (P37272), PSY_CUCME (P49293), PSY_DAUCA (Q9SSU8), PSY_NARPS (P53797), PSY_ONCHC (Q52QW5), SLSS_SOLLC (D0VFU8), SQS10_PANGI (A0A1P7Y0A2), SQS11_PANGI (A0A1P7Y0D4), SQS12_PANGI (A0A1P7Y0A8), SQS13_PANGI (A0A1P7Y0D0), SQS1_PANGI (O48666), SQS2_PANGI (C9E894), SQS3_PANGI (D2K762), SQS8_PANGI (A0A1P7Y0C9)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
18 sequences
BOCS_BOTBR (G0Y288), BOSS_BOTBR (G0Y287), CRTM_STAA3 (Q2FDU5), CRTM_STAA8 (Q2FV59), CRTM_STAAB (Q2YWE7), CRTM_STAAC (Q5HCY8), CRTM_STAAE (O07854), CRTM_STAAM (Q99R75), CRTM_STAAN (Q7A3E1), CRTM_STAAS (Q6G6B2), CRTM_STAAU (A9JQL9), CRTM_STAAW (Q8NUQ5), CRTM_STAHJ (Q4L976), HPNC_RHOPA (Q6N3F1), HPNC_SINFN (P55351), HPNC_ZYMMO (Q5NP67), PSDS_BOTBR (G0Y286), YISP_BACSU (O06728)» more |
| PDB [Detailed view] |
28 PDB
1EZF; 3ASX; 3LEE; 3Q2Z; 3Q30; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA; 8WTQ; 8WTR » more |