PROSITE entry PS01047
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General information about the entry
Entry name [info] | HMA_1 |
Accession [info] | PS01047 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00804 |
Name and characterization of the entry
Description [info] | Heavy-metal-associated domain. |
Pattern [info] |
[LIVNS]-x-{L}-[LIVMFA]-x-C-x-[STAGCDNH]-C-x(3)-[LIVFG]-{LV}-x(2)-[LIV]- x(9,11)-[IVA]-x-[LVFYS]. |
Numerical results [info]
Total number of hits | 222 in 153 different sequences |
Number of true positive hits | 207 in 138 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 63 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 93.24 % |
Recall (true positives / (true positives + false negatives)) | 76.67 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 6 |
Site [info] | metal(?) at position 6 |
Site [info] | metal(?) at position 9 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
138 sequences
ATCS_SYNE7 (P37279), ATCS_SYNY3 (P73241), ATCU1_RHIME (P58341), ATCU2_RHIME (P58342), ATCU_SINMW (Q9X5X3), ATOX1_BOVIN (Q3T0E0), ATOX1_CANLF (Q9TT99), ATOX1_HUMAN (O00244), ATOX1_MOUSE (O08997), ATOX1_RAT (Q9WUC4), ATOX1_SHEEP (Q9XT28), ATP7A_CRIGR (P49015), ATP7A_HUMAN (Q04656), ATP7A_MOUSE (Q64430), ATP7A_RAT (P70705), ATP7B_HUMAN (P35670), ATP7B_MOUSE (Q64446), ATP7B_RAT (Q64535), ATP7B_SHEEP (Q9XT50), ATSY_SYNE7 (P37385), ATSY_SYNP6 (P07893), ATU2_SCHPO (O59666), ATU2_YEAST (P38995), ATX1_SCHPO (O74735), ATX1_YEAST (P38636), ATZN_SYNY3 (Q59998), CADA1_STAAU (P20021), CADA2_STAAU (P37386), CADA_ALKPO (P30336), CADA_BACSU (O32219), CADA_LISMN (Q60048), CADA_LISMO (P58414), CADA_STAAR (Q6GIX1), COPA1_HELPX (P77871), COPA2_HELPX (Q59467), COPA3_HELPX (O08462), COPA_ARCFU (O29777), COPA_BACSU (O32220), COPA_ECO57 (Q8XD24), COPA_ECOLI (Q59385), COPA_ENTHA (P32113), COPA_HELFC (O32619), COPA_HELPJ (Q9ZM69), COPA_HELPY (P55989), COPA_SALTI (Q8Z8S4), COPA_SALTY (Q8ZR95), COPA_STAA1 (A7X6S1), COPA_STAA2 (A6U4T8), COPA_STAA3 (Q2FDV0), COPA_STAA8 (Q2FV64), COPA_STAA9 (A5IVY3), COPA_STAAB (Q2YWA3), COPA_STAAC (Q5HCZ3), COPA_STAAE (A6QK47), COPA_STAAM (Q99R80), COPA_STAAN (Q7A3E6), COPA_STAAR (Q6GDP1), COPA_STAAS (Q6G6B7), COPA_STAAT (A8Z3F8), COPA_STAAW (Q8NUQ9), COPA_STAEQ (Q5HL56), COPA_STAES (Q8CN02), COPA_STAHJ (Q4L970), COPA_STAS1 (Q4A0G1), COPA_VIBCH (Q9KPZ7), COPA_YERPE (Q8ZCA7), COPP_HELFC (O32620), COPP_HELPJ (Q9ZM70), COPP_HELPY (Q48271), COPZ_ARCFU (O29901), COPZ_BACSU (O32221), COPZ_ENTHA (Q47840), COPZ_STAA1 (A7X6S3), COPZ_STAA2 (A6U4T9), COPZ_STAA3 (Q2FDU9), COPZ_STAA8 (Q2FV63), COPZ_STAA9 (A5IVY4), COPZ_STAAB (P0C885), COPZ_STAAC (Q5HCZ2), COPZ_STAAE (A6QK48), COPZ_STAAM (Q99R79), COPZ_STAAN (Q7A3E5), COPZ_STAAR (Q6GDP0), COPZ_STAAS (Q6G6B6), COPZ_STAAT (A8Z3F9), COPZ_STAAW (Q79ZY4), COPZ_STAEQ (Q5HL55), COPZ_STAES (Q8CN01), COPZ_STAHJ (Q4L971), COPZ_STAS1 (Q4A0G2), CTPA_MYCLE (P46839), CTPA_MYCTO (P9WPU0), CTPA_MYCTU (P9WPU1), CTPB_MYCBO (P59947), CTPB_MYCLE (P46840), CTPB_MYCTO (P9WPT8), CTPB_MYCTU (P9WPT9), FIXI_BRADU (Q59207), FIXI_RHILV (O33533), FIXI_RHIME (P18398), HIP24_ARATH (O81464), HIP45_ARATH (B3H6D0), HMA4_ORYSJ (Q6H7M3), HMA5_ARATH (Q9SH30), HMA5_ORYSJ (A3AWA4), HMA6_ARATH (Q9SZC9), HMA7_ARATH (Q9S7J8), HMA9_ORYSJ (A0A0P0X004), HMCT_HELPJ (Q9ZL53), HMCT_HELPY (Q59465), MEB2_ARATH (F4KFS7), MERA_ACICA (Q52109), MERA_ACIFR (P17239), MERA_ALCSP (P94188), MERA_BACCE (P16171), MERA_ENTAG (P94702), MERA_PSEAI (P00392), MERA_PSEFL (Q51772), MERA_SERMA (P08662), MERA_SHEPU (Q54465), MERA_SHIFL (P08332), MERA_STAAU (P0A0E5), MERA_STAES (P0A0E4), MERP_ACICA (Q52107), MERP_ALCSP (P94186), MERP_ENTAG (P0A217), MERP_ENTCL (P0A218), MERP_PSEAI (P04131), MERP_PSEFL (Q51770), MERP_SALTI (P0A216), MERP_SERMA (P13113), MERP_SHEPU (Q54463), MERP_SHIFL (P04129), Y290_HAEIN (P77868), Y291_HAEIN (P43979), Y292_HAEIN (O32622), ZNTA_ECOLI (P37617), ZNTA_SHISS (Q3YW59)» more
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UniProtKB/Swiss-Prot False negative sequences |
63 sequences
ATOX1_ARATH (Q94BT9), ATOX1_DICDI (Q54PZ2), ATU1_YEAST (P38360), CCH_ARATH (O82089), CCS1_CANGA (Q6FU61), CCS1_DEBHA (Q6BK66), CCS1_EREGS (Q75DD6), CCS1_KLULA (Q6CIG2), CCS1_YARLI (Q6BZU2), CCS1_YEAST (P40202), CCS_ARATH (Q9LD47), CCS_DICDI (Q54F73), CCS_HUMAN (O14618), CCS_MOUSE (Q9WU84), CCS_ORYSJ (Q7XTY9), CCS_RAT (Q9JK72), HIP15_ARATH (Q9CAK6), HIP17_ARATH (Q9FVS0), HIP18_ARATH (Q9T0K9), HIP19_ARATH (A0JPW5), HIP1_ARATH (Q9ZUV1), HIP20_ARATH (Q9C9A3), HIP21_ARATH (Q9LF57), HIP22_ARATH (Q93VP2), HIP23_ARATH (O65657), HIP25_ARATH (O49613), HIP26_ARATH (Q9SZN7), HIP27_ARATH (Q67ZW1), HIP28_ARATH (F4IC29), HIP29_ARATH (Q9LP41), HIP2_ARATH (Q8GWS3), HIP30_ARATH (F4IQG4), HIP31_ARATH (Q84K70), HIP32_ARATH (Q9M8K5), HIP33_ARATH (F4JZL7), HIP34_ARATH (Q0WV37), HIP35_ARATH (Q9C7J6), HIP36_ARATH (Q84J88), HIP37_ARATH (A2RVM8), HIP39_ARATH (O03982), HIP3_ARATH (Q9FJH5), HIP41_ARATH (F4I1X0), HIP42_ARATH (Q9CAV5), HIP43_ARATH (Q9SFF7), HIP44_ARATH (F4JMB8), HIP4_ARATH (Q9SHQ8), HIP5_ARATH (Q9SJL2), HIP6_ARATH (Q9LZF1), HIP7_ARATH (Q9C5D3), HIP8_ARATH (Q9M8T7), HIP9_ARATH (Q9FLU5), HMA2_ARATH (Q9SZW4), HMA2_ORYSJ (A3BF39), HMA3A_ARATH (P0CW77), HMA3B_ARATH (P0CW78), HMA3_ORYSJ (Q8H384), HMA4_ARATH (O64474), HMCT_HELFE (Q9RQB4), NAKR1_ARATH (Q8LDS4), NAKR2_ARATH (Q58FZ0), NAKR3_ARATH (Q8RXH8), PI21_ORYSI (A2XT03), PI21_ORYSJ (Q7XL73)» more |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
CSPL7_ORYSJ (Q6YT98), CYC6_GRATL (Q6B941), CYC6_LIMMA (P00118), CYC6_MICAE (P00112), DDX47_DROME (Q9VIF6), GPI7_YEAST (P40367), HMGB7_ARATH (Q8LDF9), NU5C_NEPOL (Q9TKV7), QRIC2_MOUSE (Q3V2A7), R32DT_HUMAN (Q8NI28), RECO_LEIXX (Q6AED5), SYFA_THEFY (Q47N75), UD2A3_HUMAN (Q6UWM9), UD2A3_PONAB (Q5RFJ3), YAB4_ARATH (Q9LDT3)» more |
PDB [Detailed view] |
88 PDB
1AFI; 1AFJ; 1AW0; 1CC7; 1CC8; 1CPZ; 1FD8; 1FE0; 1FE4; 1FEE; 1FES; 1FVQ; 1FVS; 1JWW; 1K0V; 1KQK; 1KVI; 1KVJ; 1MWY; 1MWZ; 1OPZ; 1OQ3; 1OQ6; 1P6T; 1P8G; 1Q8L; 1S6O; 1S6U; 1TL4; 1TL5; 1Y3J; 1Y3K; 1YG0; 1YJR; 1YJT; 1YJU; 1YJV; 2AJ0; 2AJ1; 2AW0; 2EW9; 2G9O; 2GA7; 2GCF; 2GGP; 2HQI; 2K1R; 2KT2; 2KT3; 2LDI; 2LQ9; 2LQB; 2N7Y; 2OFG; 2OFH; 2QIF; 2RML; 2ROP; 2VOY; 2XMW; 3CJK; 3DXS; 3FRY; 3I9Z; 3IWL; 3IWX; 3K7R; 4A48; 4A4J; 4QOT; 4UMV; 4UMW; 4YDX; 4YEA; 5F0W; 5T7L; 5VDE; 5VDF; 6A71; 6A72; 6FF2; 7DC1; 7XUK; 7XUM; 7XUN; 7XUO; 7ZC3; 8IOY » more |