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Entry: PS01063 |
Entry name [info] | SIGMA70_ECF |
Accession [info] | PS01063 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-JUL-1998 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00814 |
Description [info] | Sigma-70 factors ECF subfamily signature. |
Pattern [info] |
[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x- [GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV]. |
Total number of hits | 42 in 42 different sequences |
Number of true positive hits | 42 in 42 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 18 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 70.00 % |
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
42 sequences
CARQ_MYXXA (Q06909 ), CNRH_CUPMC (P37978 ), ECFG_RHOPT (B3Q6P8 ), FECI_ECOLI (P23484 ), HRPL_PSESY (P37929 ), NCCH_ALCXX (Q44583 ), RFAY_XANCP (P46358 ), RPOE_ECO57 (P0AGB8 ), RPOE_ECOL6 (P0AGB7 ), RPOE_ECOLI (P0AGB6 ), RPOE_HAEIN (P44790 ), RPOE_SALT1 (D0ZSY9 ), RPOE_SALTI (P0A2F1 ), RPOE_SALTY (P0A2F0 ), RPOE_SHIFL (P0AGB9 ), RPOE_STRAT (O68887 ), RPOE_STRAW (Q82EA9 ), RPOE_STRCO (P38133 ), RPSC_MYCBO (P66810 ), RPSC_MYCTO (P9WGH0 ), RPSC_MYCTU (P9WGH1 ), RPSD_MYCBO (P66812 ), RPSD_MYCTO (P9WGG8 ), RPSD_MYCTU (P9WGG9 ), RPSH_PSEAE (Q06198 ), SIGG_MYCTO (P9WGG4 ), SIGG_MYCTU (P9WGG5 ), SIGH_MYCBO (P66808 ), SIGH_MYCS2 (A0QTP2 ), SIGH_MYCTO (P9WGH8 ), SIGH_MYCTU (P9WGH9 ), SIGL_MYCTE (H8EXN1 ), SIGL_MYCTO (P9WGH4 ), SIGL_MYCTU (P9WGH5 ), SIGM_BACSU (O07582 ), SIGR_STRCO (Q7AKG9 ), SIGV_BACSU (O05404 ), SIGW_BACSU (Q45585 ), SIGX_BACSU (P35165 ), SIGY_BACSU (P94370 ), SIGZ_BACSU (O05409 ), Y1459_HAEIN (P45215 )» more
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UniProtKB/Swiss-Prot False negative sequences |
18 sequences
RPOE_CERS4 (Q3IYV6 ), SIGE_MYCS2 (A0R2D4 ), SIGE_MYCTE (H8F0N6 ), SIGE_MYCTO (P9WGG6 ), SIGE_MYCTU (P9WGG7 ), SIGK_MYCBO (Q7U1Z6 ), SIGK_MYCBP (A1KFR7 ), SIGK_MYCSJ (A3Q5U0 ), SIGK_MYCSK (A1ULE1 ), SIGK_MYCSS (Q1B3Q8 ), SIGK_MYCTA (A5TZH1 ), SIGK_MYCTE (H8EVT0 ), SIGK_MYCTO (P9WGH6 ), SIGK_MYCTU (P9WGH7 ), SIGK_MYCUA (A0PNM4 ), SIGK_MYCVP (A1TEV0 ), SIGM_MYCTE (H8F2P4 ), SIGM_MYCTU (O53590 )» more |
PDB [Detailed view] |
26 PDB
1H3L; 1OR7; 2O7G; 4CXF; 5OR5; 5WUQ; 5WUR; 5ZX2; 5ZX3; 6DV9; 6DVB; 6DVC; 6DVD; 6DVE; 6IN7; 6JBQ; 6JCX; 6JCY; 6KON; 6KOO; 6KOP; 6KOQ; 6TYE; 6TYF; 6TYG; 7RWI » more |