PROSITE entry PS01063
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General information about the entry
Entry name [info] | SIGMA70_ECF |
Accession [info] | PS01063 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-JUL-1998 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00814 |
Name and characterization of the entry
Description [info] | Sigma-70 factors ECF subfamily signature. |
Pattern [info] |
[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x- [GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV]. |
Numerical results [info]
Total number of hits | 42 in 42 different sequences |
Number of true positive hits | 42 in 42 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 18 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 70.00 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
42 sequences
CARQ_MYXXA (Q06909), CNRH_CUPMC (P37978), ECFG_RHOPT (B3Q6P8), FECI_ECOLI (P23484), HRPL_PSESY (P37929), NCCH_ALCXX (Q44583), RFAY_XANCP (P46358), RPOE_ECO57 (P0AGB8), RPOE_ECOL6 (P0AGB7), RPOE_ECOLI (P0AGB6), RPOE_HAEIN (P44790), RPOE_SALT1 (D0ZSY9), RPOE_SALTI (P0A2F1), RPOE_SALTY (P0A2F0), RPOE_SHIFL (P0AGB9), RPOE_STRAT (O68887), RPOE_STRAW (Q82EA9), RPOE_STRCO (P38133), RPSC_MYCBO (P66810), RPSC_MYCTO (P9WGH0), RPSC_MYCTU (P9WGH1), RPSD_MYCBO (P66812), RPSD_MYCTO (P9WGG8), RPSD_MYCTU (P9WGG9), RPSH_PSEAE (Q06198), SIGG_MYCTO (P9WGG4), SIGG_MYCTU (P9WGG5), SIGH_MYCBO (P66808), SIGH_MYCS2 (A0QTP2), SIGH_MYCTO (P9WGH8), SIGH_MYCTU (P9WGH9), SIGL_MYCTE (H8EXN1), SIGL_MYCTO (P9WGH4), SIGL_MYCTU (P9WGH5), SIGM_BACSU (O07582), SIGR_STRCO (Q7AKG9), SIGV_BACSU (O05404), SIGW_BACSU (Q45585), SIGX_BACSU (P35165), SIGY_BACSU (P94370), SIGZ_BACSU (O05409), Y1459_HAEIN (P45215)» more
|
UniProtKB/Swiss-Prot False negative sequences |
18 sequences
RPOE_CERS4 (Q3IYV6), SIGE_MYCS2 (A0R2D4), SIGE_MYCTE (H8F0N6), SIGE_MYCTO (P9WGG6), SIGE_MYCTU (P9WGG7), SIGK_MYCBO (Q7U1Z6), SIGK_MYCBP (A1KFR7), SIGK_MYCSJ (A3Q5U0), SIGK_MYCSK (A1ULE1), SIGK_MYCSS (Q1B3Q8), SIGK_MYCTA (A5TZH1), SIGK_MYCTE (H8EVT0), SIGK_MYCTO (P9WGH6), SIGK_MYCTU (P9WGH7), SIGK_MYCUA (A0PNM4), SIGK_MYCVP (A1TEV0), SIGM_MYCTE (H8F2P4), SIGM_MYCTU (O53590)» more |
PDB [Detailed view] |
26 PDB
1H3L; 1OR7; 2O7G; 4CXF; 5OR5; 5WUQ; 5WUR; 5ZX2; 5ZX3; 6DV9; 6DVB; 6DVC; 6DVD; 6DVE; 6IN7; 6JBQ; 6JCX; 6JCY; 6KON; 6KOO; 6KOP; 6KOQ; 6TYE; 6TYF; 6TYG; 7RWI » more |