PROSITE entry PS01063

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General information about the entry

Entry name [info]	SIGMA70_ECF
Accession [info]	PS01063
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-JUL-1998 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00814

Name and characterization of the entry

Description [info]	Sigma-70 factors ECF subfamily signature.
Pattern [info]	[STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x- [GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	42 in 42 different sequences
Number of true positive hits	42 in 42 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	18
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	70.00 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

42 sequences

CARQ_MYXXA  (Q06909), CNRH_CUPMC  (P37978), ECFG_RHOPT  (B3Q6P8),

FECI_ECOLI  (P23484), HRPL_PSESY  (P37929), NCCH_ALCXX  (Q44583), 
RFAY_XANCP  (P46358), RPOE_ECO57  (P0AGB8), RPOE_ECOL6  (P0AGB7), 
RPOE_ECOLI  (P0AGB6), RPOE_HAEIN  (P44790), RPOE_SALT1  (D0ZSY9), 
RPOE_SALTI  (P0A2F1), RPOE_SALTY  (P0A2F0), RPOE_SHIFL  (P0AGB9), 
RPOE_STRAT  (O68887), RPOE_STRAW  (Q82EA9), RPOE_STRCO  (P38133), 
RPSC_MYCBO  (P66810), RPSC_MYCTO  (P9WGH0), RPSC_MYCTU  (P9WGH1), 
RPSD_MYCBO  (P66812), RPSD_MYCTO  (P9WGG8), RPSD_MYCTU  (P9WGG9), 
RPSH_PSEAE  (Q06198), SIGG_MYCTO  (P9WGG4), SIGG_MYCTU  (P9WGG5), 
SIGH_MYCBO  (P66808), SIGH_MYCS2  (A0QTP2), SIGH_MYCTO  (P9WGH8), 
SIGH_MYCTU  (P9WGH9), SIGL_MYCTE  (H8EXN1), SIGL_MYCTO  (P9WGH4), 
SIGL_MYCTU  (P9WGH5), SIGM_BACSU  (O07582), SIGR_STRCO  (Q7AKG9), 
SIGV_BACSU  (O05404), SIGW_BACSU  (Q45585), SIGX_BACSU  (P35165), 
SIGY_BACSU  (P94370), SIGZ_BACSU  (O05409), Y1459_HAEIN (P45215)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

18 sequences

RPOE_CERS4  (Q3IYV6), SIGE_MYCS2  (A0R2D4), SIGE_MYCTE  (H8F0N6),

SIGE_MYCTO  (P9WGG6), SIGE_MYCTU  (P9WGG7), SIGK_MYCBO  (Q7U1Z6), 
SIGK_MYCBP  (A1KFR7), SIGK_MYCSJ  (A3Q5U0), SIGK_MYCSK  (A1ULE1), 
SIGK_MYCSS  (Q1B3Q8), SIGK_MYCTA  (A5TZH1), SIGK_MYCTE  (H8EVT0), 
SIGK_MYCTO  (P9WGH6), SIGK_MYCTU  (P9WGH7), SIGK_MYCUA  (A0PNM4), 
SIGK_MYCVP  (A1TEV0), SIGM_MYCTE  (H8F2P4), SIGM_MYCTU  (O53590)

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PDB
[Detailed view]

26 PDB

1H3L; 1OR7; 2O7G; 4CXF; 5OR5; 5WUQ; 5WUR; 5ZX2; 5ZX3; 6DV9; 6DVB; 6DVC; 6DVD; 6DVE; 6IN7; 6JBQ; 6JCX; 6JCY; 6KON; 6KOO; 6KOP; 6KOQ; 6TYE; 6TYF; 6TYG; 7RWI
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