![]() |
|
Entry: PS01068 |
Entry name [info] | OMPA_1 |
Accession [info] | PS01068 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00819 |
Description [info] | OmpA-like domain. |
Pattern [info] |
[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]- x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)- [LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G. |
Total number of hits | 56 in 56 different sequences |
Number of true positive hits | 56 in 56 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 10 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 84.85 % |
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
56 sequences
ARFA_MYCBO (P65594 ), ARFA_MYCBP (A1KH31 ), ARFA_MYCTO (P9WIU4 ), ARFA_MYCTU (P9WIU5 ), MOTY_VIBAN (Q9S3P9 ), MOTY_VIBPA (P46233 ), OMP3_NEIGO (P07050 ), OMP40_PORGI (Q9S3R8 ), OMP41_PORGI (Q9S3R9 ), OMP4_NEIMA (P0A0V2 ), OMP4_NEIMB (P0A0V3 ), OMP52_HAEIF (P38368 ), OMP53_HAEIF (P45996 ), OMP5_HAEIN (P43840 ), OMPA_ATLHE (P24754 ), OMPA_BORAV (Q05146 ), OMPA_BUCAI (P57414 ), OMPA_BUCAP (Q8K9L4 ), OMPA_CITFR (P24016 ), OMPA_ECO57 (P0A911 ), OMPA_ECOLI (P0A910 ), OMPA_ESCF3 (B7LNW7 ), OMPA_ESCFE (P0C8Z2 ), OMPA_KLEAE (P09146 ), OMPA_KLEPN (P24017 ), OMPA_SALTI (Q8Z7S0 ), OMPA_SALTY (P02936 ), OMPA_SERMA (P04845 ), OMPA_SEROD (P24755 ), OMPA_SHIBC (I2BAK7 ), OMPA_SHIBL (P0DJO6 ), OMPA_SHIDY (P02935 ), OMPA_SHIFL (A0A2S4N3N0), OMPA_YERPE (Q8ZG77 ), OMPA_YERPS (P38399 ), PAL_AGRFC (Q8U9L5 ), PAL_BRUAB (P0A3S9 ), PAL_BRUME (P0A3S7 ), PAL_BRUSU (P0A3S8 ), PAL_BUCBP (Q89AJ5 ), PAL_ECO57 (P0A913 ), PAL_ECOLI (P0A912 ), PAL_HAEIN (P10324 ), PAL_LEGPN (P26493 ), PAL_PASMU (Q51886 ), PAL_PSEAE (Q9I4Z4 ), PAL_PSEPK (P0A138 ), PAL_PSEPU (P0A139 ), PAL_RHILO (Q98F85 ), PAL_RHIME (Q926C3 ), PAL_SHIFL (P0A914 ), PORF_PSEAE (P13794 ), PORF_PSEFL (P37726 ), PORF_PSESY (P22263 ), TPN50_TREPA (P38369 ), YIAD_ECOLI (P37665 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
10 sequences
LAFU_ECO44 (D3GSC3 ), LAFU_ECOLI (Q47154 ), OMP38_ACIB2 (Q6RYW5 ), OMP38_ACIBT (A3M8K2 ), OMPC_GLUDA (P84838 ), YFIB_ECOLI (P07021 ), YN58_BRUAB (P0C536 ), YP57_BRUA2 (Q2YJ83 ), YU36_BRUME (Q8YDY8 ), YU58_BRUSU (Q9RPX3 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
OMP5_HAEPR (P85410 ), OMPA_ACTLI (P80444 ) |
PDB [Detailed view] |
15 PDB
1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2MQE; 2N48; 2W8B; 3NB3; 5NHX; 5U1H » more |