PROSITE entry PS01068

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	OMPA_1
Accession [info]	PS01068
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00819

Name and characterization of the entry

Description [info]	OmpA-like domain.
Pattern [info]	[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]- x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)- [LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	56 in 56 different sequences
Number of true positive hits	56 in 56 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	12
Number of 'partial' sequences	2

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	82.35 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	56 sequences ARFA_MYCBO (P65594), ARFA_MYCBP (A1KH31), ARFA_MYCTO (P9WIU4), ARFA_MYCTU (P9WIU5), MOTY_VIBAN (Q9S3P9), MOTY_VIBPA (P46233), OMP3_NEIGO (P07050), OMP40_PORGI (Q9S3R8), OMP41_PORGI (Q9S3R9), OMP4_NEIMA (P0A0V2), OMP4_NEIMB (P0A0V3), OMP52_HAEIF (P38368), OMP53_HAEIF (P45996), OMP5_HAEIN (P43840), OMPA_ATLHE (P24754), OMPA_BORAV (Q05146), OMPA_BUCAI (P57414), OMPA_BUCAP (Q8K9L4), OMPA_CITFR (P24016), OMPA_ECO57 (P0A911), OMPA_ECOLI (P0A910), OMPA_ESCF3 (B7LNW7), OMPA_ESCFE (P0C8Z2), OMPA_KLEAE (P09146), OMPA_KLEPN (P24017), OMPA_SALTI (Q8Z7S0), OMPA_SALTY (P02936), OMPA_SERMA (P04845), OMPA_SEROD (P24755), OMPA_SHIBC (I2BAK7), OMPA_SHIBL (P0DJO6), OMPA_SHIDY (P02935), OMPA_SHIFL (A0A2S4N3N0), OMPA_YERPE (Q8ZG77), OMPA_YERPS (P38399), PAL_AGRFC (Q8U9L5), PAL_BRUAB (P0A3S9), PAL_BRUME (P0A3S7), PAL_BRUSU (P0A3S8), PAL_BUCBP (Q89AJ5), PAL_ECO57 (P0A913), PAL_ECOLI (P0A912), PAL_HAEIN (P10324), PAL_LEGPN (P26493), PAL_PASMU (Q51886), PAL_PSEAE (Q9I4Z4), PAL_PSEPK (P0A138), PAL_PSEPU (P0A139), PAL_RHILO (Q98F85), PAL_RHIME (Q926C3), PAL_SHIFL (P0A914), PORF_PSEAE (P13794), PORF_PSEFL (P37726), PORF_PSESY (P22263), TPN50_TREPA (P38369), YIAD_ECOLI (P37665) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	12 sequences LAFU_ECO44 (D3GSC3), LAFU_ECOLI (Q47154), OMP38_ACIB2 (Q6RYW5), OMP38_ACIBT (A3M8K2), OMPC_GLUDA (P84838), YFIB_ECOLI (P07021), YFIB_PSEAE (Q9I4L6), YN58_BRUAB (P0C536), YP57_BRUA2 (Q2YJ83), YU36_BRUME (Q8YDY8), YU58_BRUSU (Q9RPX3), ZORB_ECOLC (P0DW02) » more
UniProtKB/Swiss-Prot 'Partial' sequences	2 sequences OMP5_GLAPU (P85410), OMPA_ACTLI (P80444)
PDB [Detailed view]	15 PDB 1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2MQE; 2N48; 2W8B; 3NB3; 5NHX; 5U1H » more