PROSITE entry PS01081
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_TETR_1 |
| Accession [info] | PS01081 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00830 |
Name and characterization of the entry
| Description [info] | TetR-type HTH domain signature. |
| Pattern [info] |
[GS]-[LIVMFYSP]-x(2,3)-[TS]-[LIVMTA]-x(2)-[LIVM]-x(5)-[LIVQSA]- [STAGENQH]-x-[GPART]-x-[LIVMFA]-[FYSTNRH]-x-[HFYRA]-[FVW]-x-[DNSTKAG]- [KQMT]-x(2,3)-[LIVM]. |
Numerical results [info]
| Total number of hits | 224 in 224 different sequences |
| Number of true positive hits | 224 in 224 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 150 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 59.89 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
224 sequences
ACRR_ECOL6 (P0ACT0), ACRR_ECOLI (P0ACS9), ACRR_SHIFL (P0ACT1), ARPR_PSEPU (Q9KJC4), BDCR_ECOLI (P39334), BEPR_BRUSU (Q8G2M8), BETI1_CHRSD (Q1QXD9), BETI2_CHRSD (Q9L4K2), BETI_AGRFC (Q8UH57), BETI_BRUA2 (Q2YMS6), BETI_BRUA4 (A6X2G6), BETI_BRUAB (Q57EH9), BETI_BRUC2 (A9M9H9), BETI_BRUMB (C0RHQ4), BETI_BRUME (Q8YFY3), BETI_BRUSI (B0CKN5), BETI_BRUSU (Q8G1Z7), BETI_BURA4 (B1Z032), BETI_BURCH (A0B2F5), BETI_BURCJ (B4EHJ0), BETI_BURCM (Q0B713), BETI_BURL3 (Q39A42), BETI_BURM1 (A9AN01), BETI_BURM7 (A3MEC5), BETI_BURM9 (A2RWD7), BETI_BURMA (Q62CH6), BETI_BURO0 (B1K709), BETI_BURO1 (Q1BQE0), BETI_BURP0 (A3P6A9), BETI_BURP1 (Q3JLL9), BETI_BURP6 (A3NKP7), BETI_BURPS (Q63KK9), BETI_BURTA (Q2T6C8), BETI_BURVG (A4JJG4), BETI_CROS8 (A7MFA6), BETI_ECO24 (A7ZI52), BETI_ECO27 (B7UJG6), BETI_ECO45 (B7MCD2), BETI_ECO55 (B7L442), BETI_ECO57 (Q8X6C3), BETI_ECO5E (B5Z1R2), BETI_ECO7I (B7NK49), BETI_ECO8A (B7M2V7), BETI_ECODH (B1XET8), BETI_ECOHS (A7ZWV6), BETI_ECOL5 (Q0TKV9), BETI_ECOL6 (Q8FKI7), BETI_ECOLC (B1J0W4), BETI_ECOLI (P17446), BETI_ECOLU (B7N8L5), BETI_ECOSE (B6I093), BETI_ECOSM (B1LIJ9), BETI_ECOUT (Q1RFM1), BETI_KLEP3 (B5Y006), BETI_PARP8 (B2JS87), BETI_PARPJ (B2TCK0), BETI_PARXL (Q13NG5), BETI_PECAS (Q6D6E1), BETI_PECCP (C6DKY6), BETI_PROMH (B4EX96), BETI_PSE14 (Q48CM5), BETI_PSEA7 (A6VEI5), BETI_PSEA8 (B7V5R5), BETI_PSEAB (Q02DY8), BETI_PSEAE (Q9HTJ0), BETI_PSEF5 (Q4K4K9), BETI_PSEFS (C3K3D1), BETI_PSEMY (A4XPI7), BETI_PSEPF (Q3K5H5), BETI_PSESM (Q88AF0), BETI_PSEU2 (Q4ZM61), BETI_RHILO (Q985M2), BETI_SERP5 (A8GBX7), BETI_SHIF8 (Q0T7M8), BETI_VIBA3 (B7VQ27), BETI_VIBC1 (A7N212), BETI_VIBPA (Q87H51), BETI_VIBVU (Q8D3K4), BETI_VIBVY (Q7MF14), BETI_YERP3 (A7FKL4), BETI_YERPA (Q1C930), BETI_YERPB (B2K8U6), BETI_YERPE (Q8ZGV8), BETI_YERPN (Q1CFR9), BETI_YERPP (A4TNP0), BETI_YERPS (Q66D52), BM3R1_PRIMG (P43506), CECR_ECOLI (P0ACU0), CECR_SHIFL (P0ACU1), CHLER_MYCTO (P9WMD2), CHLER_MYCTU (P9WMD3), ENVR_ECO57 (P0ACT3), ENVR_ECOLI (P0ACT2), FATR_BACSU (O08335), HTHR_MYCBO (P67443), HTHR_MYCTO (P9WMC2), HTHR_MYCTU (P9WMC3), MEPR_PSEPU (P0C068), MTRR_NEIGO (P39897), PKSA_BACSU (O34381), QACR_STAAM (P0A0N3), QACR_STAAU (P0A0N4), QACR_STAHA (P0A0N5), SLMA_ACTP2 (A3N3Q5), SLMA_ACTP7 (B3H337), SLMA_ACTPJ (B0BTZ2), SLMA_CITK8 (A8ARM8), SLMA_CROS8 (A7MQB0), SLMA_ECO24 (A7ZTJ2), SLMA_ECO27 (B7UM47), SLMA_ECO45 (B7MFK2), SLMA_ECO55 (B7L761), SLMA_ECO57 (Q8X580), SLMA_ECO5E (B5YWD9), SLMA_ECO7I (B7NQ02), SLMA_ECO81 (B7N282), SLMA_ECO8A (B7M4C6), SLMA_ECOBW (C4ZXN3), SLMA_ECODH (B1X975), SLMA_ECOHS (A8A6A3), SLMA_ECOK1 (A1AHH2), SLMA_ECOL5 (Q0TBG8), SLMA_ECOL6 (Q8FC86), SLMA_ECOLC (B1IYV9), SLMA_ECOLI (P0C093), SLMA_ECOLU (B7NEU5), SLMA_ECOSE (B6I3L8), SLMA_ECOSM (B1LK78), SLMA_EDWI9 (C5B9D1), SLMA_ENT38 (A4W508), SLMA_ERWT9 (B2VF78), SLMA_ESCF3 (B7LVK2), SLMA_GLAP5 (B8F853), SLMA_HAEDU (Q7VN48), SLMA_HAEI8 (Q4QLV2), SLMA_HAEIE (A5UDB3), SLMA_HAEIG (A5UI96), SLMA_HAEIN (P29280), SLMA_KLEP3 (B5XTG2), SLMA_KLEP7 (A6TFN2), SLMA_MANSM (Q65R67), SLMA_PECAS (Q6DAW0), SLMA_PECCP (C6DIC4), SLMA_PHOLL (Q7MY26), SLMA_PHOPR (Q6LVN6), SLMA_PROMH (B4F0W5), SLMA_SALA4 (B5EXE5), SLMA_SALAR (A9MKN4), SLMA_SALCH (Q57IA1), SLMA_SALDC (B5FM64), SLMA_SALEP (B5R5G5), SLMA_SALG2 (B5RGE6), SLMA_SALHS (B4T9C5), SLMA_SALNS (B4SXE2), SLMA_SALPA (Q5PC27), SLMA_SALPB (A9MVN6), SLMA_SALPC (C0Q1X3), SLMA_SALPK (B5BI15), SLMA_SALSV (B4TZY2), SLMA_SALTI (Q8Z2H4), SLMA_SALTY (Q8ZL46), SLMA_SERP5 (A8GLE8), SLMA_SHIB3 (B2TTV5), SLMA_SHIF8 (Q0SYG8), SLMA_SHIFL (P0C094), SLMA_SODGM (Q2NQT9), SLMA_YERE8 (A1JHW9), SLMA_YERP3 (A7FCT1), SLMA_YERPA (Q1C264), SLMA_YERPB (B2JYN0), SLMA_YERPE (Q8ZJP6), SLMA_YERPG (A9R671), SLMA_YERPN (Q1CCZ9), SLMA_YERPP (A4TSE0), SLMA_YERPS (Q66GD9), SLMA_YERPY (B1JQX6), SRPR_PSEPU (Q9R9T9), TCMR_STRGA (P39885), TETC_ECOLX (P28815), TETR1_ECOLX (P03038), TETR2_ECOLX (P04483), TETR3_ECOLX (P03039), TETR4_ECOLX (P0ACT4), TETR4_SALOR (P0ACT5), TETR5_ECOLX (P21337), TETR7_VIBAN (P51560), TETR8_PASMD (P51561), TETR8_PHODP (P51562), TETR_MYCA9 (B1MM06), TTGR_PSEPK (Q88N29), TTGR_PSEPT (Q9AIU0), TTGW_PSEPT (Q93PU7), UIDR_ECO57 (P0ACT8), UIDR_ECOL6 (P0ACT7), UIDR_ECOLI (P0ACT6), UIDR_SHIFL (P0ACT9), Y1388_MYCBO (P67435), Y1556_MYCTO (P9WMD0), Y1556_MYCTU (P9WMD1), Y1581_MYCBO (P67437), Y2250_MYCTO (P9WMC4), Y2250_MYCTU (P9WMC5), Y2274_MYCBO (Q7VEN0), Y2364_STAAN (Q7A3C7), Y2452_STAAB (Q2YWD0), Y2464_STAAS (Q6G696), Y2498_STAAW (Q79ZX9), Y2515_STAA3 (Q2FDS9), Y2578_STAAM (Q99R60), Y2593_STAAC (Q5HCX3), Y2658_STAAR (Q6GDM3), Y2897_STAA8 (Q2FV42), Y2912_MYCTO (P9WMC6), Y2912_MYCTU (P9WMC7), Y2936_MYCBO (P67441), Y570_HAEIN (P44757), Y767_MYCTO (P9WMD6), Y767_MYCTU (P9WMD7), Y790_MYCBO (P67433), Y893_HAEIN (P44923), YERO_BACSU (O31500), YHGD_BACSU (P32398), YTTP_BACSU (O34970), YUXN_BACSU (P40950)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
150 sequences
ACNR_CORDI (Q6NH62), ACNR_COREF (Q8FTA6), ACNR_CORGL (Q8NQ97), ACNR_CORJK (Q4JVM3), ACNR_MYCTU (O53165), ACUR_CERS4 (Q3J6K8), AFRP_STRGR (Q9ZN78), ALKX_MYCTU (O05892), AQDR_RHOER (A0A0E4AFE3), BETI_RHIME (O69786), BETI_STRM5 (B4SHW1), COMR_ECOLI (P75952), DHAR_MYCSX (Q9RAJ1), DHAS_LACLA (Q9CIV9), ETHR_MYCBO (Q7TVI1), ETHR_MYCS2 (A0R666), ETHR_MYCTO (P9WMC0), ETHR_MYCTU (P9WMC1), FABR_CITK8 (A8AKV8), FABR_CROS8 (A7ML90), FABR_ECO24 (A7ZUI3), FABR_ECO57 (Q7A964), FABR_ECOBW (C5A0R2), FABR_ECODH (B1XBX4), FABR_ECOHS (A8A771), FABR_ECOK1 (A1AIE5), FABR_ECOL5 (Q0TA93), FABR_ECOL6 (Q8FB90), FABR_ECOLI (P0ACU5), FABR_ECOUT (Q1R3U4), FABR_KLEP7 (A6TGE7), FABR_SALAR (A9MHG9), FABR_SALCH (Q57H90), FABR_SALPA (Q5PK70), FABR_SALPC (C0Q479), FABR_SALPK (B5BJN7), FABR_SALTI (Q8XGD6), FABR_SALTY (Q7CPB8), FABR_SHIB3 (B2TWF8), FABR_SHIBS (Q31U25), FABR_SHIDS (Q32AE3), FABR_SHIF8 (Q0SY28), FABR_SHIFL (P0ACU6), FABR_SHISS (Q3YV13), FABR_YERE8 (A1JI38), FABR_YERP3 (A7FD11), FABR_YERPA (Q1CBU4), FABR_YERPB (B2JZF5), FABR_YERPE (Q7CL09), FABR_YERPG (A9R6N6), FABR_YERPN (Q1CNP3), FABR_YERPP (A4TRG3), FABR_YERPS (Q66G60), FABR_YERPY (B1JQ48), FADR_BACSU (P94548), HTHR_STRCO (Q9ADP7), ICAR_STAA8 (Q9RQQ0), ICAR_STAAC (Q5HCN2), ICAR_STAAE (A6QKF4), ICAR_STAAM (Q7A2K5), ICAR_STAAN (Q7A352), ICAR_STAAR (Q6GDD9), ICAR_STAAS (Q6G609), ICAR_STAAW (Q79ZV4), ICAR_STAEP (Q8GLC6), ICAR_STAEQ (Q5HKQ1), KSTR2_MYCS2 (A0R4Z6), KSTR2_MYCTO (P9WMB8), KSTR2_MYCTU (P9WMB9), KSTR2_RHOJR (Q0S7V2), KSTR_MYCS2 (A0R528), KSTR_MYCTU (P96856), KSTR_RHOJR (Q0S868), LFRR_MYCS2 (A0R5K4), LMRA_BACSU (O34619), LUXR_VIBHA (P21308), MCE3R_MYCTU (P95251), MFTR_MYCTO (P9WMB6), MFTR_MYCTU (P9WMB7), NEMR_ECOL6 (P67431), NEMR_ECOLI (P67430), NICS_PSEPK (Q88FX7), RAAS_MYCTU (O86312), RCDA_ECOLI (P75811), RUTR_ECO57 (Q8X4Z7), RUTR_ECOL6 (P0ACU3), RUTR_ECOLI (P0ACU2), RUTR_SHIFL (P0ACU4), SLMA_ALIF1 (Q5E8M7), SLMA_ALIFM (B5FFF4), SLMA_ALTMD (F2G1U7), SLMA_COLP3 (Q48AG4), SLMA_IDILO (Q5QZB7), SLMA_MARMS (A6VSX5), SLMA_MARN8 (A1U6F3), SLMA_PASMU (Q9CLQ9), SLMA_SHEAM (A1S2C9), SLMA_SHEB2 (B8E4J2), SLMA_SHEB5 (A3CZJ3), SLMA_SHEB8 (A6WIA3), SLMA_SHEB9 (A9KY01), SLMA_SHEDO (Q12SF8), SLMA_SHEFN (Q07WF8), SLMA_SHEHH (B0TQK8), SLMA_SHELP (A3QIQ2), SLMA_SHEON (Q8E9L9), SLMA_SHEPA (A8H9B3), SLMA_SHEPC (A4Y2K8), SLMA_SHEPW (B8CM26), SLMA_SHESA (A0L1S2), SLMA_SHESH (A8FQ72), SLMA_SHESM (Q0HE53), SLMA_SHESR (Q0HZU6), SLMA_SHESW (A1REU1), SLMA_SHEWM (B1KL08), SLMA_VIBA3 (B7VHK0), SLMA_VIBC1 (A7MSP5), SLMA_VIBCH (Q9KVD2), SLMA_VIBPA (Q87T90), SLMA_VIBVU (Q8DDX7), SLMA_VIBVY (Q7MPT0), Y097_STAAR (Q6GKL1), Y1255_MYCTO (P9WMD4), Y1255_MYCTU (P9WMD5), Y1816_MYCTO (P9WMC8), Y1816_MYCTU (P9WMC9), Y1846_MYCBO (P67439), Y196_MYCTO (P9WME0), Y196_MYCTU (P9WME1), Y472_MYCTO (P9WMD8), Y472_MYCTU (P9WMD9), Y6555_BACAN (Q9RMY4), Y681_MYCTU (O53789), YCNC_BACSU (P94423), YDES_BACSU (P96676), YDGC_BACSU (P96701), YDH1_XANAU (P22645), YEZE_BACSU (Q7WY76), YFIR_BACSU (O31560), YJDC_ECOL6 (P0ACU8), YJDC_ECOLI (P0ACU7), YJDC_SHIFL (P0ACU9), YOBS_BACSU (O34892), YPB3_LACLL (P42097), YVAF_BACSU (O32228), YVDT_BACSU (O07001), YVKB_BACSU (O34643), YWCC_BACSU (P39601), YXAF_BACSU (P42105), YXBF_BACSU (P46330)» more |
| PDB [Detailed view] |
108 PDB
1A6I; 1BJZ; 1JT0; 1JT6; 1JTX; 1JTY; 1JUM; 1JUP; 1JUS; 1ORK; 1QPI; 1QVT; 1QVU; 1RKW; 1RPW; 2DTZ; 2FJ1; 2G0E; 2GBY; 2HQ5; 2NS7; 2NS8; 2O7O; 2QOP; 2TCT; 2TRT; 2UXH; 2UXI; 2UXO; 2UXP; 2UXU; 2VKE; 2VKV; 2VPR; 2X6O; 2X9D; 2XB5; 2XDN; 2XGC; 2XGD; 2XGE; 2XPU; 2XPV; 2XPW; 2XRL; 3BCG; 3BQZ; 3BR0; 3BR1; 3BR2; 3BR3; 3BR5; 3BR6; 3BT9; 3BTC; 3BTI; 3BTJ; 3BTL; 3FK6; 3FK7; 3NXC; 3PM1; 3QKX; 3ZQF; 3ZQG; 3ZQH; 3ZQI; 4ABZ; 4AC0; 4AUX; 4B1R; 4B3A; 4D7M; 4D7N; 4GCK; 4GFL; 4V2F; 4V2G; 5FKK; 5FKL; 5FKM; 5FKN; 5FKO; 5HBU; 5HSZ; 5K58; 5MRU; 6AYI; 6FPL; 6FPM; 6FTS; 6MJ1; 6OF0; 6QJW; 6QJX; 6RBL; 6RBM; 6RCR; 6RGX; 6SY4; 6SY6; 6YR1; 6YR2; 7JNP; 7JU3; 7K1A; 7K1C; 7KD8 » more |