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Entry: PS01081

General information about the entry

Entry name [info] HTH_TETR_1
Accession [info] PS01081
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00830

Name and characterization of the entry

Description [info] TetR-type HTH domain signature.
Pattern [info]
[GS]-[LIVMFYSP]-x(2,3)-[TS]-[LIVMTA]-x(2)-[LIVM]-x(5)-[LIVQSA]-
[STAGENQH]-x-[GPART]-x-[LIVMFA]-[FYSTNRH]-x-[HFYRA]-[FVW]-x-[DNSTKAG]-
[KQMT]-x(2,3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 224 in 224 different sequences
Number of true positive hits 224 in 224 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 149
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.05 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
224 sequences

ACRR_ECOL6  (P0ACT0    ), ACRR_ECOLI  (P0ACS9    ), ACRR_SHIFL  (P0ACT1    ), 
ARPR_PSEPU  (Q9KJC4    ), BDCR_ECOLI  (P39334    ), BEPR_BRUSU  (Q8G2M8    ), 
BETI1_CHRSD (Q1QXD9    ), BETI2_CHRSD (Q9L4K2    ), BETI_AGRFC  (Q8UH57    ), 
BETI_BRUA2  (Q2YMS6    ), BETI_BRUAB  (Q57EH9    ), BETI_BRUC2  (A9M9H9    ), 
BETI_BRUMB  (C0RHQ4    ), BETI_BRUME  (Q8YFY3    ), BETI_BRUSI  (B0CKN5    ), 
BETI_BRUSU  (Q8G1Z7    ), BETI_BURA4  (B1Z032    ), BETI_BURCA  (Q1BQE0    ), 
BETI_BURCC  (B1K709    ), BETI_BURCH  (A0B2F5    ), BETI_BURCJ  (B4EHJ0    ), 
BETI_BURCM  (Q0B713    ), BETI_BURL3  (Q39A42    ), BETI_BURM1  (A9AN01    ), 
BETI_BURM7  (A3MEC5    ), BETI_BURM9  (A2RWD7    ), BETI_BURMA  (Q62CH6    ), 
BETI_BURP0  (A3P6A9    ), BETI_BURP1  (Q3JLL9    ), BETI_BURP6  (A3NKP7    ), 
BETI_BURPS  (Q63KK9    ), BETI_BURTA  (Q2T6C8    ), BETI_BURVG  (A4JJG4    ), 
BETI_CROS8  (A7MFA6    ), BETI_ECO24  (A7ZI52    ), BETI_ECO27  (B7UJG6    ), 
BETI_ECO45  (B7MCD2    ), BETI_ECO55  (B7L442    ), BETI_ECO57  (Q8X6C3    ), 
BETI_ECO5E  (B5Z1R2    ), BETI_ECO7I  (B7NK49    ), BETI_ECO8A  (B7M2V7    ), 
BETI_ECODH  (B1XET8    ), BETI_ECOHS  (A7ZWV6    ), BETI_ECOL5  (Q0TKV9    ), 
BETI_ECOL6  (Q8FKI7    ), BETI_ECOLC  (B1J0W4    ), BETI_ECOLI  (P17446    ), 
BETI_ECOLU  (B7N8L5    ), BETI_ECOSE  (B6I093    ), BETI_ECOSM  (B1LIJ9    ), 
BETI_ECOUT  (Q1RFM1    ), BETI_KLEP3  (B5Y006    ), BETI_OCHA4  (A6X2G6    ), 
BETI_PARP8  (B2JS87    ), BETI_PARPJ  (B2TCK0    ), BETI_PARXL  (Q13NG5    ), 
BETI_PECAS  (Q6D6E1    ), BETI_PECCP  (C6DKY6    ), BETI_PROMH  (B4EX96    ), 
BETI_PSE14  (Q48CM5    ), BETI_PSEA7  (A6VEI5    ), BETI_PSEA8  (B7V5R5    ), 
BETI_PSEAB  (Q02DY8    ), BETI_PSEAE  (Q9HTJ0    ), BETI_PSEF5  (Q4K4K9    ), 
BETI_PSEFS  (C3K3D1    ), BETI_PSEMY  (A4XPI7    ), BETI_PSEPF  (Q3K5H5    ), 
BETI_PSESM  (Q88AF0    ), BETI_PSEU2  (Q4ZM61    ), BETI_RHILO  (Q985M2    ), 
BETI_SERP5  (A8GBX7    ), BETI_SHIF8  (Q0T7M8    ), BETI_VIBCB  (A7N212    ), 
BETI_VIBPA  (Q87H51    ), BETI_VIBTL  (B7VQ27    ), BETI_VIBVU  (Q8D3K4    ), 
BETI_VIBVY  (Q7MF14    ), BETI_YERP3  (A7FKL4    ), BETI_YERPA  (Q1C930    ), 
BETI_YERPB  (B2K8U6    ), BETI_YERPE  (Q8ZGV8    ), BETI_YERPN  (Q1CFR9    ), 
BETI_YERPP  (A4TNP0    ), BETI_YERPS  (Q66D52    ), BM3R1_BACME (P43506    ), 
CECR_ECOLI  (P0ACU0    ), CECR_SHIFL  (P0ACU1    ), CHLER_MYCTO (P9WMD2    ), 
CHLER_MYCTU (P9WMD3    ), ENVR_ECO57  (P0ACT3    ), ENVR_ECOLI  (P0ACT2    ), 
FATR_BACSU  (O08335    ), HTHR_MYCBO  (P67443    ), HTHR_MYCTO  (P9WMC2    ), 
HTHR_MYCTU  (P9WMC3    ), MEPR_PSEPU  (P0C068    ), MTRR_NEIGO  (P39897    ), 
PKSA_BACSU  (O34381    ), QACR_STAAM  (P0A0N3    ), QACR_STAAU  (P0A0N4    ), 
QACR_STAHA  (P0A0N5    ), SLMA_ACTP2  (A3N3Q5    ), SLMA_ACTP7  (B3H337    ), 
SLMA_ACTPJ  (B0BTZ2    ), SLMA_CITK8  (A8ARM8    ), SLMA_CROS8  (A7MQB0    ), 
SLMA_ECO24  (A7ZTJ2    ), SLMA_ECO27  (B7UM47    ), SLMA_ECO45  (B7MFK2    ), 
SLMA_ECO55  (B7L761    ), SLMA_ECO57  (Q8X580    ), SLMA_ECO5E  (B5YWD9    ), 
SLMA_ECO7I  (B7NQ02    ), SLMA_ECO81  (B7N282    ), SLMA_ECO8A  (B7M4C6    ), 
SLMA_ECOBW  (C4ZXN3    ), SLMA_ECODH  (B1X975    ), SLMA_ECOHS  (A8A6A3    ), 
SLMA_ECOK1  (A1AHH2    ), SLMA_ECOL5  (Q0TBG8    ), SLMA_ECOL6  (Q8FC86    ), 
SLMA_ECOLC  (B1IYV9    ), SLMA_ECOLI  (P0C093    ), SLMA_ECOLU  (B7NEU5    ), 
SLMA_ECOSE  (B6I3L8    ), SLMA_ECOSM  (B1LK78    ), SLMA_EDWI9  (C5B9D1    ), 
SLMA_ENT38  (A4W508    ), SLMA_ERWT9  (B2VF78    ), SLMA_ESCF3  (B7LVK2    ), 
SLMA_HAEDU  (Q7VN48    ), SLMA_HAEI8  (Q4QLV2    ), SLMA_HAEIE  (A5UDB3    ), 
SLMA_HAEIG  (A5UI96    ), SLMA_HAEIN  (P29280    ), SLMA_HAEPS  (B8F853    ), 
SLMA_KLEP3  (B5XTG2    ), SLMA_KLEP7  (A6TFN2    ), SLMA_MANSM  (Q65R67    ), 
SLMA_PECAS  (Q6DAW0    ), SLMA_PECCP  (C6DIC4    ), SLMA_PHOLL  (Q7MY26    ), 
SLMA_PHOPR  (Q6LVN6    ), SLMA_PROMH  (B4F0W5    ), SLMA_SALA4  (B5EXE5    ), 
SLMA_SALAR  (A9MKN4    ), SLMA_SALCH  (Q57IA1    ), SLMA_SALDC  (B5FM64    ), 
SLMA_SALEP  (B5R5G5    ), SLMA_SALG2  (B5RGE6    ), SLMA_SALHS  (B4T9C5    ), 
SLMA_SALNS  (B4SXE2    ), SLMA_SALPA  (Q5PC27    ), SLMA_SALPB  (A9MVN6    ), 
SLMA_SALPC  (C0Q1X3    ), SLMA_SALPK  (B5BI15    ), SLMA_SALSV  (B4TZY2    ), 
SLMA_SALTI  (Q8Z2H4    ), SLMA_SALTY  (Q8ZL46    ), SLMA_SERP5  (A8GLE8    ), 
SLMA_SHIB3  (B2TTV5    ), SLMA_SHIF8  (Q0SYG8    ), SLMA_SHIFL  (P0C094    ), 
SLMA_SODGM  (Q2NQT9    ), SLMA_YERE8  (A1JHW9    ), SLMA_YERP3  (A7FCT1    ), 
SLMA_YERPA  (Q1C264    ), SLMA_YERPB  (B2JYN0    ), SLMA_YERPE  (Q8ZJP6    ), 
SLMA_YERPG  (A9R671    ), SLMA_YERPN  (Q1CCZ9    ), SLMA_YERPP  (A4TSE0    ), 
SLMA_YERPS  (Q66GD9    ), SLMA_YERPY  (B1JQX6    ), SRPR_PSEPU  (Q9R9T9    ), 
TCMR_STRGA  (P39885    ), TETC_ECOLX  (P28815    ), TETR1_ECOLX (P03038    ), 
TETR2_ECOLX (P04483    ), TETR3_ECOLX (P03039    ), TETR4_ECOLX (P0ACT4    ), 
TETR4_SALOR (P0ACT5    ), TETR5_ECOLX (P21337    ), TETR7_VIBAN (P51560    ), 
TETR8_PASMD (P51561    ), TETR8_PHODP (P51562    ), TETR_MYCA9  (B1MM06    ), 
TTGR_PSEPK  (Q88N29    ), TTGR_PSEPT  (Q9AIU0    ), TTGW_PSEPT  (Q93PU7    ), 
UIDR_ECO57  (P0ACT8    ), UIDR_ECOL6  (P0ACT7    ), UIDR_ECOLI  (P0ACT6    ), 
UIDR_SHIFL  (P0ACT9    ), Y1388_MYCBO (P67435    ), Y1556_MYCTO (P9WMD0    ), 
Y1556_MYCTU (P9WMD1    ), Y1581_MYCBO (P67437    ), Y2250_MYCTO (P9WMC4    ), 
Y2250_MYCTU (P9WMC5    ), Y2274_MYCBO (Q7VEN0    ), Y2364_STAAN (Q7A3C7    ), 
Y2452_STAAB (Q2YWD0    ), Y2464_STAAS (Q6G696    ), Y2498_STAAW (Q79ZX9    ), 
Y2515_STAA3 (Q2FDS9    ), Y2578_STAAM (Q99R60    ), Y2593_STAAC (Q5HCX3    ), 
Y2658_STAAR (Q6GDM3    ), Y2897_STAA8 (Q2FV42    ), Y2912_MYCTO (P9WMC6    ), 
Y2912_MYCTU (P9WMC7    ), Y2936_MYCBO (P67441    ), Y570_HAEIN  (P44757    ), 
Y767_MYCTO  (P9WMD6    ), Y767_MYCTU  (P9WMD7    ), Y790_MYCBO  (P67433    ), 
Y893_HAEIN  (P44923    ), YERO_BACSU  (O31500    ), YHGD_BACSU  (P32398    ), 
YTTP_BACSU  (O34970    ), YUXN_BACSU  (P40950    )
» more

UniProtKB/Swiss-Prot
False negative sequences
149 sequences

ACNR_CORDI  (Q6NH62    ), ACNR_COREF  (Q8FTA6    ), ACNR_CORGL  (Q8NQ97    ), 
ACNR_CORJK  (Q4JVM3    ), ACNR_MYCTU  (O53165    ), ACUR_RHOS4  (Q3J6K8    ), 
AFRP_STRGR  (Q9ZN78    ), AQDR_RHOER  (A0A0E4AFE3), BETI_RHIME  (O69786    ), 
BETI_STRM5  (B4SHW1    ), COMR_ECOLI  (P75952    ), DHAR_MYCSX  (Q9RAJ1    ), 
DHAS_LACLA  (Q9CIV9    ), ETHR_MYCBO  (Q7TVI1    ), ETHR_MYCS2  (A0R666    ), 
ETHR_MYCTO  (P9WMC0    ), ETHR_MYCTU  (P9WMC1    ), FABR_CITK8  (A8AKV8    ), 
FABR_CROS8  (A7ML90    ), FABR_ECO24  (A7ZUI3    ), FABR_ECO57  (Q7A964    ), 
FABR_ECOBW  (C5A0R2    ), FABR_ECODH  (B1XBX4    ), FABR_ECOHS  (A8A771    ), 
FABR_ECOK1  (A1AIE5    ), FABR_ECOL5  (Q0TA93    ), FABR_ECOL6  (Q8FB90    ), 
FABR_ECOLI  (P0ACU5    ), FABR_ECOUT  (Q1R3U4    ), FABR_KLEP7  (A6TGE7    ), 
FABR_SALAR  (A9MHG9    ), FABR_SALCH  (Q57H90    ), FABR_SALPA  (Q5PK70    ), 
FABR_SALPC  (C0Q479    ), FABR_SALPK  (B5BJN7    ), FABR_SALTI  (Q8XGD6    ), 
FABR_SALTY  (Q7CPB8    ), FABR_SHIB3  (B2TWF8    ), FABR_SHIBS  (Q31U25    ), 
FABR_SHIDS  (Q32AE3    ), FABR_SHIF8  (Q0SY28    ), FABR_SHIFL  (P0ACU6    ), 
FABR_SHISS  (Q3YV13    ), FABR_YERE8  (A1JI38    ), FABR_YERP3  (A7FD11    ), 
FABR_YERPA  (Q1CBU4    ), FABR_YERPB  (B2JZF5    ), FABR_YERPE  (Q7CL09    ), 
FABR_YERPG  (A9R6N6    ), FABR_YERPN  (Q1CNP3    ), FABR_YERPP  (A4TRG3    ), 
FABR_YERPS  (Q66G60    ), FABR_YERPY  (B1JQ48    ), FADR_BACSU  (P94548    ), 
HTHR_STRCO  (Q9ADP7    ), ICAR_STAA8  (Q9RQQ0    ), ICAR_STAAC  (Q5HCN2    ), 
ICAR_STAAE  (A6QKF4    ), ICAR_STAAM  (Q7A2K5    ), ICAR_STAAN  (Q7A352    ), 
ICAR_STAAR  (Q6GDD9    ), ICAR_STAAS  (Q6G609    ), ICAR_STAAW  (Q79ZV4    ), 
ICAR_STAEP  (Q8GLC6    ), ICAR_STAEQ  (Q5HKQ1    ), KSTR2_MYCS2 (A0R4Z6    ), 
KSTR2_MYCTO (P9WMB8    ), KSTR2_MYCTU (P9WMB9    ), KSTR2_RHOJR (Q0S7V2    ), 
KSTR_MYCS2  (A0R528    ), KSTR_MYCTU  (P96856    ), KSTR_RHOJR  (Q0S868    ), 
LFRR_MYCS2  (A0R5K4    ), LMRA_BACSU  (O34619    ), LUXR_VIBHA  (P21308    ), 
MCE3R_MYCTU (P95251    ), MFTR_MYCTO  (P9WMB6    ), MFTR_MYCTU  (P9WMB7    ), 
NEMR_ECOL6  (P67431    ), NEMR_ECOLI  (P67430    ), NICS_PSEPK  (Q88FX7    ), 
RAAS_MYCTU  (O86312    ), RCDA_ECOLI  (P75811    ), RUTR_ECO57  (Q8X4Z7    ), 
RUTR_ECOL6  (P0ACU3    ), RUTR_ECOLI  (P0ACU2    ), RUTR_SHIFL  (P0ACU4    ), 
SLMA_ALIF1  (Q5E8M7    ), SLMA_ALIFM  (B5FFF4    ), SLMA_ALTMD  (F2G1U7    ), 
SLMA_COLP3  (Q48AG4    ), SLMA_IDILO  (Q5QZB7    ), SLMA_MARHV  (A1U6F3    ), 
SLMA_MARMS  (A6VSX5    ), SLMA_PASMU  (Q9CLQ9    ), SLMA_SHEAM  (A1S2C9    ), 
SLMA_SHEB2  (B8E4J2    ), SLMA_SHEB5  (A3CZJ3    ), SLMA_SHEB8  (A6WIA3    ), 
SLMA_SHEB9  (A9KY01    ), SLMA_SHEDO  (Q12SF8    ), SLMA_SHEFN  (Q07WF8    ), 
SLMA_SHEHH  (B0TQK8    ), SLMA_SHELP  (A3QIQ2    ), SLMA_SHEON  (Q8E9L9    ), 
SLMA_SHEPA  (A8H9B3    ), SLMA_SHEPC  (A4Y2K8    ), SLMA_SHEPW  (B8CM26    ), 
SLMA_SHESA  (A0L1S2    ), SLMA_SHESH  (A8FQ72    ), SLMA_SHESM  (Q0HE53    ), 
SLMA_SHESR  (Q0HZU6    ), SLMA_SHESW  (A1REU1    ), SLMA_SHEWM  (B1KL08    ), 
SLMA_VIBCB  (A7MSP5    ), SLMA_VIBCH  (Q9KVD2    ), SLMA_VIBPA  (Q87T90    ), 
SLMA_VIBTL  (B7VHK0    ), SLMA_VIBVU  (Q8DDX7    ), SLMA_VIBVY  (Q7MPT0    ), 
Y097_STAAR  (Q6GKL1    ), Y1255_MYCTO (P9WMD4    ), Y1255_MYCTU (P9WMD5    ), 
Y1816_MYCTO (P9WMC8    ), Y1816_MYCTU (P9WMC9    ), Y1846_MYCBO (P67439    ), 
Y196_MYCTO  (P9WME0    ), Y196_MYCTU  (P9WME1    ), Y472_MYCTO  (P9WMD8    ), 
Y472_MYCTU  (P9WMD9    ), Y6555_BACAN (Q9RMY4    ), Y681_MYCTU  (O53789    ), 
YCNC_BACSU  (P94423    ), YDES_BACSU  (P96676    ), YDGC_BACSU  (P96701    ), 
YDH1_XANAU  (P22645    ), YEZE_BACSU  (Q7WY76    ), YFIR_BACSU  (O31560    ), 
YJDC_ECOL6  (P0ACU8    ), YJDC_ECOLI  (P0ACU7    ), YJDC_SHIFL  (P0ACU9    ), 
YOBS_BACSU  (O34892    ), YPB3_LACLL  (P42097    ), YVAF_BACSU  (O32228    ), 
YVDT_BACSU  (O07001    ), YVKB_BACSU  (O34643    ), YWCC_BACSU  (P39601    ), 
YXAF_BACSU  (P42105    ), YXBF_BACSU  (P46330    )
» more


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