PROSITE entry PS01095
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General information about the entry
| Entry name [info] | GH18_1 |
| Accession [info] | PS01095 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-NOV-1995 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00839 |
| Associated ProRule [info] | PRU10053 |
Name and characterization of the entry
| Description [info] | Glycosyl hydrolases family 18 (GH18) active site signature. |
| Pattern [info] |
[LIVMFY]-[DN]-G-[LIVMF]-[DN]-[LIVMF]-[DN]-x-E. |
Numerical results [info]
| Total number of hits | 110 in 109 different sequences |
| Number of true positive hits | 98 in 97 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 12 in 12 different sequences |
| Number of false negative sequences | 44 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 89.09 % |
| Recall (true positives / (true positives + false negatives)) | 69.01 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 2 |
| Site [info] | active_site at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
97 sequences
CHI10_DROME (Q9W5U2), CHI18_ENTFA (Q838S2), CHI1_APHAL (P32470), CHI1_ARTBC (D4AT07), CHI1_CANAL (Q5AAH2), CHI1_CANAX (P46876), CHI1_COCIM (Q1E3R8), CHI1_COCP7 (C5P230), CHI1_COCPS (P0CB51), CHI1_METAN (O14456), CHI1_METRA (E9ERT9), CHI1_PINMG (H2A0L4), CHI1_RHINI (P29025), CHI1_RHIOL (P29026), CHI2_ARTBC (D4AVJ0), CHI2_CANAL (P40953), CHI2_COCIM (Q1EAR5), CHI2_COCP7 (P54197), CHI2_METAN (Q4U4T0), CHI2_METRA (E9F9R9), CHI2_PINMG (H2A0L5), CHI2_RHIOL (P29027), CHI2_YEAST (Q06350), CHI33_ARTBC (D4B4X4), CHI33_TRIHA (Q12713), CHI37_TRIHA (Q8NJQ5), CHI3_CANAL (P40954), CHI3_METAN (Q6QDR4), CHI3_METRA (E9ENC6), CHI42_TRIHA (P48827), CHI46_TRIHA (A6N6J0), CHI4_CANAL (Q5AM60), CHI4_METAN (C9WJD0), CHI4_METRA (E9F7R6), CHI52_PAEXY (A0A8G1A3Q5), CHIA1_ASPFM (Q873Y0), CHIA1_ASPFU (Q4WEP7), CHIA1_ASPNC (A2QUQ2), CHIA1_EMEND (Q92223), CHIA1_EMENI (G5EB30), CHIA1_NIACI (P20533), CHIA_ARATH (P19172), CHIA_BOVIN (Q95M17), CHIA_CICAR (P36908), CHIA_CUCSA (P17541), CHIA_FLAJ1 (A5FB63), CHIA_HUMAN (Q9BZP6), CHIA_MOUSE (Q91XA9), CHIA_PHAAN (P29024), CHIA_PSEO7 (P32823), CHIA_RAT(Q6RY07), CHIA_SERMA (P07254), CHIA_TOBAC (P29060), CHIB1_ASPFM (Q873X9), CHIB1_ASPFU (E9QRF2), CHIB1_EMENI (G5EAZ3), CHIB_EMEND (Q92222), CHIB_SERMA (P11797), CHIB_TOBAC (P29061), CHID_NIACI (P27050), CHIE_BETVU (P36910), CHIT1_HUMAN (Q13231), CHIT1_MOUSE (Q9D7Q1), CHIT1_TULSB (Q9SLP4), CHIT2_DROME (Q9W092), CHIT2_TULSB (Q7M443), CHIT3_VITVI (P51614), CHIT5_LOTJA (A0A1B1J8Z2), CHIT_BRUMA (P29030), CHIT_CAEEL (Q11174), CHIT_MANSE (P36362), CHIT_NPVAC (P41684), CHIT_NPVOP (O10363), CHIT_PUNGR (G1UH28), CHIT_STRLI (P36909), CHIT_STRPL (P11220), CHIT_YEAST (P29029), CHIX_STROI (Q05638), CHI_PINMA (P86955), CHLY_HEVBR (P23472), CHT5A_MEDTR (A0A072VEP0), CHT5B_MEDTR (A0A072UR65), DIAC_BOVIN (Q01458), DIAC_HUMAN (Q01459), DIAC_MOUSE (Q8R242), DIAC_RAT(Q01460), EBA2_ELIME (P36912), EBAG_FLAST (P80036), EBAG_STRPL (P04067), EBI1_BIFLS (B7GPC7), ENDOS_STRP1 (Q99Y92), ENDS2_STRP9 (T1WGN1), ENDSD_STRDY (A0A191T6Q6), KTXA_KLULA (P09805), NFH1_MEDTR (U5N4E3), PPG1_CANAL (Q5A6B6), YKVQ_BACSU (O31682)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
44 sequences
CH3L1_BOVIN (P30922), CH3L1_BUBBU (Q7YS85), CH3L1_CAPHI (Q8SPQ0), CH3L1_HUMAN (P36222), CH3L1_MOUSE (Q61362), CH3L1_PIG (Q29411), CH3L1_PONAB (Q5RBP6), CH3L1_RAT (Q9WTV1), CH3L1_SHEEP (Q6TMG6), CH3L2_HUMAN (Q15782), CHIA_ECOLI (P13656), CHID1_BOVIN (Q5EAB4), CHID1_DANRE (Q7SYK0), CHID1_DICDI (Q54G42), CHID1_HUMAN (Q9BWS9), CHID1_MOUSE (Q922Q9), CHID1_PONAB (Q5RFF6), CHID1_RAT (A0JPQ9), CHID1_XENLA (Q68EX9), CHID1_XENTR (Q66IL0), CHID_VIBFU (P96156), CHITL_CAEEL (Q18143), CHIT_SACEN (P14529), CHL18_DERFA (Q86R84), CHL18_DERPT (Q4JK71), CONB_CANEN (P49347), DIAC1_DICDI (Q7KWW8), DIAC2_DICDI (Q8T293), EBA1_ELIME (P36911), EBA3_ELIME (P36913), OVGP1_BOVIN (Q28042), OVGP1_HUMAN (Q12889), OVGP1_MESAU (Q60557), OVGP1_MOUSE (Q62010), OVGP1_PAPAN (P36718), OVGP1_PIG (Q28990), OVGP1_SHEEP (Q28542), XIP1_ORYSJ (Q7GCM7), XIP1_WHEAT (Q8L5C6), XIP2_ORYSJ (Q53NL5), XIP_ORYSJ (Q5WMW5), YDHD_BACSU (O05495), YKZR_BACSU (C0H404), YVBX_BACSU (O32258)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
CAI_PHAVU (P84708), CHI1_STROI (P29115), CHI2_STROI (P29116), CHIT_STRVL (P84754), CHLY_PARTH (P23473), NAHA1_PALCA (P85512)» more |
| UniProtKB/Swiss-Prot False positive sequences |
12 sequences
CAPSD_CPVBM (Q6TS43), CAPSD_LDCPR (Q91IE1), CCNL2_XENTR (Q5BKF8), HISX_CALS4 (Q8R882), HSCB_ARATH (Q8L7K4), NU4C_PROM0 (A3PAL7), NU4C_PROM2 (A8G2F5), NU4C_PROM5 (A2BUC6), NU4C_PROM9 (Q31D31), NU4C_PROMP (Q7V3C8), SSUB2_RHIL3 (Q1M7A6), TRPM2_HUMAN (O94759)» more |
| PDB [Detailed view] |
114 PDB
1C3F; 1CTN; 1D2K; 1EDT; 1FFQ; 1FFR; 1GOI; 1GUV; 1H0G; 1H0I; 1HKI; 1HKJ; 1HKK; 1HKM; 1HVQ; 1ITX; 1K9T; 1LG1; 1LG2; 1LL4; 1LL6; 1LLO; 1LQ0; 1O6I; 1OGB; 1OGG; 1RD6; 1W9P; 1W9U; 1W9V; 1WAW; 1WB0; 1WNO; 1X6L; 1X6N; 2A3A; 2A3B; 2A3C; 2A3E; 2HVM; 2IUZ; 2UY2; 2UY3; 2UY4; 2UY5; 2WK2; 2WLY; 2WLZ; 2WM0; 2XUC; 2XVN; 2YBT; 2YBU; 3CH9; 3CHC; 3CHD; 3CHE; 3CHF; 3FXY; 3FY1; 3RM4; 3RM8; 3RM9; 3RME; 3WD0; 3WD1; 3WD2; 3WD3; 3WD4; 4NUY; 4TOQ; 4TXE; 4WJX; 4WK9; 4WKA; 4WKF; 4WKH; 4Z2G; 4Z2H; 4Z2I; 4Z2J; 4Z2K; 4Z2L; 5HBF; 5NR8; 5NRA; 5NRF; 6E58; 6EPB; 6JJR; 6JK6; 6JK9; 6JKF; 6LDU; 6LE7; 6LE8; 6MDS; 6MDV; 6VE1; 6ZE8; 7C34; 7C92; 7CB1; 7FD6; 7ZYA; 8FG5; 8FG7; 8FR9; 8FRA; 8FRB; 8FRC; 8FRD; 8FRG; 8GCA » more |