 |
|
| Entry: PS01095 |
General information about the entry
| Entry name [info] | GH18_1 |
| Accession [info] | PS01095 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-NOV-1995 DATA UPDATE; 02-JUN-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00839 |
| Associated ProRule [info] | PRU10053 |
Name and characterization of the entry
| Description [info] | Glycosyl hydrolases family 18 (GH18) active site signature. |
| Pattern [info] |
[LIVMFY]-[DN]-G-[LIVMF]-[DN]-[LIVMF]-[DN]-x-E. |
Numerical results [info]
| Total number of hits | 105 in 104 different sequences |
| Number of true positive hits | 94 in 93 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 11 in 11 different sequences |
| Number of false negative sequences | 44 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 89.52 % |
| Recall (true positives / (true positives + false negatives)) | 68.12 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 2 |
| Site [info] | active_site at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
93 sequences
CHI10_DROME (Q9W5U2 ), CHI18_ENTFA (Q838S2 ), CHI1_APHAL (P32470 ), CHI1_ARTBC (D4AT07 ), CHI1_CANAL (Q5AAH2 ), CHI1_CANAX (P46876 ), CHI1_COCIM (Q1E3R8 ), CHI1_COCP7 (C5P230 ), CHI1_COCPS (P0CB51 ), CHI1_METAN (O14456 ), CHI1_METRA (E9ERT9 ), CHI1_PINMG (H2A0L4 ), CHI1_RHINI (P29025 ), CHI1_RHIOL (P29026 ), CHI2_ARTBC (D4AVJ0 ), CHI2_CANAL (P40953 ), CHI2_COCIM (Q1EAR5 ), CHI2_COCP7 (P54197 ), CHI2_METAN (Q4U4T0 ), CHI2_METRA (E9F9R9 ), CHI2_PINMG (H2A0L5 ), CHI2_RHIOL (P29027 ), CHI2_YEAST (Q06350 ), CHI33_ARTBC (D4B4X4 ), CHI33_TRIHA (Q12713 ), CHI37_TRIHA (Q8NJQ5 ), CHI3_CANAL (P40954 ), CHI3_METAN (Q6QDR4 ), CHI3_METRA (E9ENC6 ), CHI42_TRIHA (P48827 ), CHI46_TRIHA (A6N6J0 ), CHI4_CANAL (Q5AM60 ), CHI4_METAN (C9WJD0 ), CHI4_METRA (E9F7R6 ), CHIA1_ASPFM (Q873Y0 ), CHIA1_ASPFU (Q4WEP7 ), CHIA1_ASPNC (A2QUQ2 ), CHIA1_BACCI (P20533 ), CHIA1_EMEND (Q92223 ), CHIA1_EMENI (G5EB30 ), CHIA_ARATH (P19172 ), CHIA_BOVIN (Q95M17 ), CHIA_CICAR (P36908 ), CHIA_CUCSA (P17541 ), CHIA_FLAJ1 (A5FB63 ), CHIA_HUMAN (Q9BZP6 ), CHIA_MOUSE (Q91XA9 ), CHIA_PHAAN (P29024 ), CHIA_PSEO7 (P32823 ), CHIA_RAT (Q6RY07 ), CHIA_SERMA (P07254 ), CHIA_TOBAC (P29060 ), CHIB1_ASPFM (Q873X9 ), CHIB1_ASPFU (E9QRF2 ), CHIB1_EMENI (G5EAZ3 ), CHIB_EMEND (Q92222 ), CHIB_SERMA (P11797 ), CHIB_TOBAC (P29061 ), CHID_BACCI (P27050 ), CHIE_BETVU (P36910 ), CHIT1_HUMAN (Q13231 ), CHIT1_MOUSE (Q9D7Q1 ), CHIT1_TULSB (Q9SLP4 ), CHIT2_DROME (Q9W092 ), CHIT2_TULSB (Q7M443 ), CHIT3_VITVI (P51614 ), CHIT5_LOTJA (A0A1B1J8Z2), CHIT_BRUMA (P29030 ), CHIT_CAEEL (Q11174 ), CHIT_MANSE (P36362 ), CHIT_NPVAC (P41684 ), CHIT_NPVOP (O10363 ), CHIT_PUNGR (G1UH28 ), CHIT_STRLI (P36909 ), CHIT_STRPL (P11220 ), CHIT_YEAST (P29029 ), CHIX_STROI (Q05638 ), CHI_PINMA (P86955 ), CHLY_HEVBR (P23472 ), CHT5A_MEDTR (A0A072VEP0), CHT5B_MEDTR (A0A072UR65), DIAC_BOVIN (Q01458 ), DIAC_HUMAN (Q01459 ), DIAC_MOUSE (Q8R242 ), DIAC_RAT (Q01460 ), EBA2_ELIME (P36912 ), EBAG_FLAST (P80036 ), EBAG_STRPL (P04067 ), EBI1_BIFLS (B7GPC7 ), KTXA_KLULA (P09805 ), NFH1_MEDTR (U5N4E3 ), PPG1_CANAL (Q5A6B6 ), YKVQ_BACSU (O31682 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
44 sequences
CH3L1_BOVIN (P30922 ), CH3L1_BUBBU (Q7YS85 ), CH3L1_CAPHI (Q8SPQ0 ), CH3L1_HUMAN (P36222 ), CH3L1_MOUSE (Q61362 ), CH3L1_PIG (Q29411 ), CH3L1_PONAB (Q5RBP6 ), CH3L1_RAT (Q9WTV1 ), CH3L1_SHEEP (Q6TMG6 ), CH3L2_HUMAN (Q15782 ), CHIA_ECOLI (P13656 ), CHID1_BOVIN (Q5EAB4 ), CHID1_DANRE (Q7SYK0 ), CHID1_DICDI (Q54G42 ), CHID1_HUMAN (Q9BWS9 ), CHID1_MOUSE (Q922Q9 ), CHID1_PONAB (Q5RFF6 ), CHID1_RAT (A0JPQ9 ), CHID1_XENLA (Q68EX9 ), CHID1_XENTR (Q66IL0 ), CHID_VIBFU (P96156 ), CHITL_CAEEL (Q18143 ), CHIT_SACEN (P14529 ), CHL18_DERFA (Q86R84 ), CHL18_DERPT (Q4JK71 ), CONB_CANEN (P49347 ), DIAC1_DICDI (Q7KWW8 ), DIAC2_DICDI (Q8T293 ), EBA1_ELIME (P36911 ), EBA3_ELIME (P36913 ), OVGP1_BOVIN (Q28042 ), OVGP1_HUMAN (Q12889 ), OVGP1_MESAU (Q60557 ), OVGP1_MOUSE (Q62010 ), OVGP1_PAPAN (P36718 ), OVGP1_PIG (Q28990 ), OVGP1_SHEEP (Q28542 ), XIP1_ORYSJ (Q7GCM7 ), XIP1_WHEAT (Q8L5C6 ), XIP2_ORYSJ (Q53NL5 ), XIP_ORYSJ (Q5WMW5 ), YDHD_BACSU (O05495 ), YKZR_BACSU (C0H404 ), YVBX_BACSU (O32258 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
CAI_PHAVU (P84708 ), CHI1_STROI (P29115 ), CHI2_STROI (P29116 ), CHIT_STRVL (P84754 ), CHLY_PARTH (P23473 ), NAHA1_PALCA (P85512 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
11 sequences
CAPSD_CPVBM (Q6TS43 ), CAPSD_LDCPR (Q91IE1 ), CCNL2_XENTR (Q5BKF8 ), HISX_CALS4 (Q8R882 ), NU4C_PROM0 (A3PAL7 ), NU4C_PROM2 (A8G2F5 ), NU4C_PROM5 (A2BUC6 ), NU4C_PROM9 (Q31D31 ), NU4C_PROMP (Q7V3C8 ), SSUB2_RHIL3 (Q1M7A6 ), TRPM2_HUMAN (O94759 )» more |
| PDB [Detailed view] |
94 PDB
1C3F; 1CTN; 1D2K; 1EDT; 1FFQ; 1FFR; 1GOI; 1GUV; 1H0G; 1H0I; 1HKI; 1HKJ; 1HKK; 1HKM; 1HVQ; 1ITX; 1K9T; 1LG1; 1LG2; 1LL4; 1LL6; 1LLO; 1LQ0; 1O6I; 1OGB; 1OGG; 1RD6; 1W9P; 1W9U; 1W9V; 1WAW; 1WB0; 1WNO; 1X6L; 1X6N; 2A3A; 2A3B; 2A3C; 2A3E; 2HVM; 2IUZ; 2UY2; 2UY3; 2UY4; 2UY5; 2WK2; 2WLY; 2WLZ; 2WM0; 2XUC; 2XVN; 2YBT; 2YBU; 3CH9; 3CHC; 3CHD; 3CHE; 3CHF; 3FXY; 3FY1; 3RM4; 3RM8; 3RM9; 3RME; 3WD0; 3WD1; 3WD2; 3WD3; 3WD4; 4TOQ; 4TXE; 4WJX; 4WK9; 4WKA; 4WKF; 4WKH; 4Z2G; 4Z2H; 4Z2I; 4Z2J; 4Z2K; 4Z2L; 5HBF; 5NR8; 5NRA; 5NRF; 6EPB; 6JJR; 6JK6; 6JK9; 6JKF; 6VE1; 6ZE8; 7C34 » more |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission