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PROSITE entry PS01096


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General information about the entry

Entry name [info] PPIC_PPIASE_1
Accession [info] PS01096
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00840

Name and characterization of the entry

Description [info] PpiC-type peptidyl-prolyl cis-trans isomerase signature.
Pattern [info] 
F-[GSADEI]-x-[LVAQ]-A-x(3)-[ST]-x(3,4)-[STQ]-x(3,5)-[GER]-G-x-[LIVM]-
[GS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 120 in 101 different sequences
Number of true positive hits 119 in 100 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 131
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.17 %
Recall (true positives / (true positives + false negatives)) 47.60 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 100 sequences 

CBF2_CAMJE  (Q0PAS1), CBF2_CAMJJ  (A1VYV6), DOD_DROME   (P54353), 

ESS1_YEAST  (P22696), NIFM_AZOCH  (P23119), NIFM_AZOVI  (P14890), 
NIFM_KLEOX  (P0A3Z0), NIFM_KLEPN  (P0A3Y9), PIN1_ARATH  (Q9SL42), 
PIN1_BOVIN  (Q5BIN5), PIN1_DIGLA  (Q9LEK8), PIN1_HUMAN  (Q13526), 
PIN1_MACFA  (Q4R383), PIN1_MALDO  (Q94G00), PIN1_MOUSE  (Q9QUR7), 
PLP1_BORBR  (Q7WCX5), PLP1_BORPA  (Q7W5E0), PLP1_BORPE  (P40415), 
PLP_RICBR   (Q1RI35), PPIC_ECO57  (P0A9L7), PPIC_ECOL6  (P0A9L6), 
PPIC_ECOLI  (P0A9L5), PPIC_SALTI  (P0A266), PPIC_SALTY  (P0A265), 
PPID_ECOL6  (P0ADY2), PPID_ECOLI  (P0ADY1), PPID_HAEDU  (Q7VKX4), 
PPID_HAEIN  (P44092), PRSA1_BACAN (Q81U45), PRSA1_BACCR (Q81GY5), 
PRSA2_BACAN (Q81TU1), PRSA2_BACCR (Q81GN0), PRSA3_BACCR (Q81DT1), 
PRSA4_BACCR (Q81CB1), PRSA_BACSU  (P24327), PRSA_CALS4  (Q8R760), 
PRSA_CLOAB  (Q97E99), PRSA_CLOB1  (A7FPK5), PRSA_CLOB6  (C3KW94), 
PRSA_CLOBH  (A5I7R3), PRSA_CLOBJ  (C1FNE4), PRSA_CLOBK  (B1IGZ5), 
PRSA_CLOBL  (A7GJD2), PRSA_CLOBM  (B1KTE0), PRSA_CLOK1  (B9DY54), 
PRSA_CLOK5  (A5N4J2), PRSA_GEOKA  (Q5L289), PRSA_GEOSW  (C5D6L9), 
PRSA_GEOTN  (A4IKU2), PRSA_LACLC  (P0C2B5), PRSA_LACLS  (Q02VE3), 
PRSA_LACPA  (Q02473), PRSA_OCEIH  (Q8CXK4), SURA_ALBFT  (Q223E5), 
SURA_ALKEH  (Q0AC82), SURA_AROAE  (Q5P7I9), SURA_BAUCH  (Q1LSS0), 
SURA_CHRSD  (Q1QZ33), SURA_COLP3  (Q47VK0), SURA_CUPMC  (Q1LRA3), 
SURA_CUPPJ  (Q475Q3), SURA_DECAR  (Q479U4), SURA_ECO57  (P0ABZ8), 
SURA_ECOL6  (P0ABZ7), SURA_ECOLI  (P0ABZ6), SURA_ECOUT  (Q1RGE4), 
SURA_HAEIN  (P44721), SURA_IDILO  (Q5QVN9), SURA_METCA  (Q60B78), 
SURA_METFK  (Q1GZC0), SURA_NITMU  (Q2YBP3), SURA_NITOC  (Q3JAF1), 
SURA_PECAS  (Q6D0E2), SURA_PHOLL  (Q7N8V5), SURA_POLSJ  (Q121Q4), 
SURA_PSEA6  (Q15QB3), SURA_RALN1  (Q8Y220), SURA_SACD2  (Q21MS8), 
SURA_SALCH  (Q57TG8), SURA_SALPA  (Q5PDE6), SURA_SALTI  (Q8XEV3), 
SURA_SALTY  (Q7CR87), SURA_SHEDO  (Q12K61), SURA_SHEFN  (Q07YK0), 
SURA_SHEON  (Q8EB95), SURA_SHESM  (Q0HLT0), SURA_SHESR  (Q0HS08), 
SURA_SHIBS  (Q326I0), SURA_SHIDS  (Q32K41), SURA_SHIFL  (P0ABZ9), 
SURA_SHISS  (Q3Z5V6), SURA_SODGM  (Q2NVX4), SURA_THIDA  (Q3SGF9), 
SURA_YERPA  (Q1C0H3), SURA_YERPE  (Q7CG87), SURA_YERPN  (Q1CMT0), 
SURA_YERPS  (Q66EQ7), Y161_HELPJ  (Q9ZMQ7), Y175_HELPY  (P56112), 
YACD_BACSU  (P37566)
» more

UniProtKB/Swiss-Prot
False negative sequences		 131 sequences 

PIN1_RHIO9  (P0C1J8), PIN1_SCHPO  (O74448), PIN4_ASPFU  (Q4WJM6), 

PIN4_BOVIN  (A6QPY8), PIN4_DANRE  (Q503Y7), PIN4_EMENI  (Q5B5W1), 
PIN4_GIBZE  (Q4I665), PIN4_HUMAN  (Q9Y237), PIN4_MOUSE  (Q9CWW6), 
PIN4_NEUCR  (Q7RYY4), PIN4_TAEGU  (B5KFL3), PIN4_XENTR  (Q6P4K8), 
PLP_RICCN   (Q92H91), PLP_RICFE   (Q4UKY0), PLP_RICPR   (Q9ZCX6), 
PLP_RICTY   (Q68WG0), PPID_BUCAI  (P57550), PPID_BUCAP  (Q8K987), 
PPID_BUCBP  (Q89A98), PRSA1_LACJO (P60750), PRSA1_LACPL (Q88X05), 
PRSA1_LISIN (Q92BR2), PRSA1_LISMF (Q71ZM6), PRSA1_LISMO (Q8Y759), 
PRSA1_STRP1 (P60811), PRSA1_STRP3 (P0DD42), PRSA1_STRP6 (Q5XBH0), 
PRSA1_STRP8 (Q8P0E5), PRSA1_STRPQ (P0DD43), PRSA2_LACJO (P60810), 
PRSA2_LACPL (Q88T16), PRSA2_LISIN (Q929F4), PRSA2_LISMF (Q71XE6), 
PRSA2_LISMO (Q8Y557), PRSA2_STRP1 (P60812), PRSA2_STRP3 (P0DD44), 
PRSA2_STRP6 (Q5X9P6), PRSA2_STRP8 (P60813), PRSA2_STRPQ (P0DD45), 
PRSA3_BACAN (Q81QT1), PRSA_CLOP1  (Q0TMG9), PRSA_CLOPE  (Q8XHK0), 
PRSA_CLOPS  (Q0SQ68), PRSA_CLOTE  (Q899I2), PRSA_ENTFA  (Q837Y9), 
PRSA_EXIS2  (B1YK87), PRSA_HALH5  (Q9KDN4), PRSA_LATSS  (Q38XZ9), 
PRSA_LEVBA  (Q03QE1), PRSA_LIGS1  (Q1WUQ1), PRSA_PEDPA  (Q03GD4), 
PRSA_STAA1  (A7X3U8), PRSA_STAA2  (A6U2U4), PRSA_STAA3  (Q2FFQ5), 
PRSA_STAA8  (Q2G2S6), PRSA_STAAB  (Q2YTZ6), PRSA_STAAC  (Q5HET4), 
PRSA_STAAE  (A6QI23), PRSA_STAAM  (P60747), PRSA_STAAN  (P60748), 
PRSA_STAAR  (Q6GFL5), PRSA_STAAS  (Q6G894), PRSA_STAAT  (A8YY10), 
PRSA_STAAW  (P60749), PRSA_STAEQ  (Q5HN96), PRSA_STAES  (Q8CNR4), 
PRSA_STRA1  (Q3K1P9), PRSA_STRA3  (Q8E602), PRSA_STRA5  (Q8E0C6), 
PRSA_STRE4  (C0M9L5), PRSA_STREM  (B4U214), PRSA_STRGC  (A8AYJ0), 
PRSA_STRMU  (Q8CVC6), PRSA_STRP2  (Q04KU8), PRSA_STRP7  (C1C6V8), 
PRSA_STRPI  (B1IBE1), PRSA_STRPJ  (B8ZPD9), PRSA_STRPN  (Q97R51), 
PRSA_STRPS  (B2IPD4), PRSA_STRR6  (Q8DQ24), PRSA_STRS7  (C0MCT3), 
PRSA_STRSV  (A3CLY1), PRSA_STRZJ  (C1CDX6), PRSA_STRZP  (C1CK62), 
PRSA_STRZT  (C1CRR9), SSP1_NEUCR  (O60045), STR12_ARATH (Q93WI0), 
SURA_ALCBS  (Q0VMV4), SURA_ALIF1  (Q5E863), SURA_BLOPB  (Q493R5), 
SURA_BORA1  (Q2KXA6), SURA_BORBR  (Q7WG19), SURA_BORPA  (Q7W4J5), 
SURA_BORPE  (Q7VU12), SURA_BUCAI  (P57240), SURA_BUCAP  (Q8KA01), 
SURA_BURL3  (Q39D35), SURA_BURMA  (Q62MM4), SURA_BURO1  (Q1BTQ6), 
SURA_BURP1  (Q3JVW8), SURA_BURPS  (Q63X78), SURA_BURTA  (Q2T116), 
SURA_CHRVO  (Q7NQB0), SURA_HAHCH  (Q2S9C1), SURA_HYDCU  (Q31F26), 
SURA_LEGPA  (Q5X877), SURA_LEGPH  (Q5ZYR3), SURA_LEGPL  (Q5WZN0), 
SURA_NITEU  (Q82W17), SURA_PARXL  (Q145L3), SURA_PHOPR  (Q6LV39), 
SURA_PSE14  (Q48NT5), SURA_PSEAE  (Q9I5U3), SURA_PSEF5  (Q4K4X7), 
SURA_PSEPF  (Q3K5T4), SURA_PSEPK  (Q88QT4), SURA_PSESM  (Q88A44), 
SURA_PSET1  (Q3IFD3), SURA_PSEU2  (Q4ZMG7), SURA_VIBCH  (Q9KUS0), 
SURA_VIBPA  (Q87ST4), SURA_VIBVU  (Q8DED4), SURA_VIBVY  (Q7MP84), 
SURA_XANAC  (Q8PP23), SURA_XANC5  (Q3BX80), SURA_XANC8  (Q4UR41), 
SURA_XANCP  (Q8PCE1), SURA_XANOM  (Q2NZI6), SURA_XANOR  (Q5GWC1), 
SURA_XYLFA  (Q9PF40), SURA_XYLFT  (Q87AJ0)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

PGK_APLCA   (O61471)


				
	

	

		PDB
[Detailed view]		
		
			84 PDB
			


			1F8A; 1J6Y; 1JNS; 1JNT; 1M5Y; 1NMV; 1NMW; 1PIN; 1ZCN; 1ZK6; 2F21; 2ITK; 
			
				2KGJ; 2PV1; 2PV2; 2PV3; 2Q5A; 2RUC; 2RUD; 2RUQ; 2RUR; 2XP3; 2XP4; 2XP5; 
				2XP6; 2XP7; 2XP8; 2XP9; 2XPA; 2XPB; 2ZQS; 2ZQT; 2ZQU; 2ZQV; 2ZR4; 2ZR5; 
				2ZR6; 3I6C; 3IK8; 3IKD; 3IKG; 3JYJ; 3KAB; 3KAC; 3KAD; 3KAF; 3KAG; 3KAH; 
				3KAI; 3KCE; 3NTP; 3ODK; 3OOB; 3RFW; 3TC5; 3TCZ; 3TDB; 3WH0; 4QIB; 4TNS; 
				4TYO; 4U84; 4U85; 4U86; 4WO7; 5EZ1; 5GPH; 5UY9; 6BHF; 6DUN; 6O33; 6O34; 
				6VAJ; 6VJ4; 6VJ6; 6XD8; 7EFJ; 7EFX; 7EKV; 7F0M; 7KKF; 7SA5; 7SUQ; 7SUR
			
			

			» more