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Entry: PS01117

General information about the entry

Entry name [info] HTH_MARR_1
Accession [info] PS01117
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00861

Name and characterization of the entry

Description [info] MarR-type HTH domain signature.
Pattern [info]
[STNAQ]-[LIAMV]-x(0,1)-[RNGSYKE]-x(4,5)-[LM]-[EIVLA]-x(2)-[GESD]-
[LFYWHA]-[LIVC]-x(7)-[DNS]-[RKQG]-[RK]-x(6)-[TS]-x(2)-[GAS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 123 in 123 different sequences
Number of true positive hits 123 in 123 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 66
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.08 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
123 sequences

BADR_RHOPA  (O07458    ), EXPG_RHIME  (P96440    ), FARR_NEIGO  (P0DPR8    ), 
HCRR_THAAR  (O33817    ), HOSA_ECO11  (Q9F8R8    ), HOSA_ECO27  (P69782    ), 
HOSA_ECO57  (Q7ABA6    ), HOSA_ECOLX  (Q93CC3    ), HPCR_ECOLX  (P62573    ), 
HPCR_SHIFL  (P62574    ), HPR_BACAA   (C3P2U9    ), HPR_BACAC   (C3LCW8    ), 
HPR_BACAH   (A0RAQ6    ), HPR_BACAN   (Q81JG1    ), HPR_BACC0   (B7JCX5    ), 
HPR_BACC1   (Q73CB7    ), HPR_BACC2   (B7IKC1    ), HPR_BACC3   (C1EKG1    ), 
HPR_BACC4   (B7HG19    ), HPR_BACC7   (B7HZH8    ), HPR_BACCN   (A7GLZ1    ), 
HPR_BACCQ   (B9IT66    ), HPR_BACCR   (Q813W6    ), HPR_BACCZ   (Q63EV6    ), 
HPR_BACHD   (Q9KDM7    ), HPR_BACHK   (Q6HMB8    ), HPR_BACLD   (Q65LS8    ), 
HPR_BACMK   (A9VI69    ), HPR_BACP2   (A8FBL1    ), HPR_BACSK   (Q5WHU1    ), 
HPR_BACSU   (P11065    ), HPR_BACVZ   (A7Z311    ), HPR_EXIS2   (B1YK88    ), 
HPR_GEOKA   (Q5L293    ), HPR_GEOSW   (C5D6L6    ), HPR_GEOTN   (A4IKT9    ), 
HPR_LYSSC   (B1HVK6    ), MARR_ECOLI  (P27245    ), MARR_SALTI  (P0A2T5    ), 
MARR_SALTY  (P0A2T4    ), MGRA_STAA8  (Q2G0B1    ), MGRA_STAAC  (Q5HHY2    ), 
MGRA_STAAM  (Q99VT5    ), MGRA_STAAN  (Q7A6X2    ), MGRA_STAAR  (Q6GIV6    ), 
MGRA_STAAS  (Q6GBE4    ), MGRA_STAAU  (P0C1S0    ), MGRA_STAAW  (Q7A1J9    ), 
MHQR_BACSU  (O31672    ), MPRA_ECO57  (P0ACS1    ), MPRA_ECOL6  (P0ACS0    ), 
MPRA_ECOLI  (P0ACR9    ), PAPX_ECOLX  (P42193    ), PCHR_BACSU  (P40762    ), 
PECS_DICD3  (P42195    ), PETP_RHOCB  (P31078    ), PRSX_ECOL6  (P62089    ), 
PRSX_ECOLX  (P62088    ), SLYA_BLOFL  (Q7VR54    ), SLYA_BLOPB  (Q492T9    ), 
SLYA_ECO24  (A7ZMA4    ), SLYA_ECO27  (P0A4U5    ), SLYA_ECO45  (B7M9Z6    ), 
SLYA_ECO55  (B7L5J5    ), SLYA_ECO57  (P0A8W3    ), SLYA_ECO5E  (B5Z476    ), 
SLYA_ECO7I  (B7NTZ0    ), SLYA_ECO81  (B7MVC0    ), SLYA_ECO8A  (B7M0J9    ), 
SLYA_ECOBW  (C4ZYA5    ), SLYA_ECODH  (B1XFV4    ), SLYA_ECOHS  (A8A0I5    ), 
SLYA_ECOL6  (P0A4U4    ), SLYA_ECOLI  (P0A8W2    ), SLYA_ECOLU  (B7NB96    ), 
SLYA_ECOSM  (B1LEP4    ), SLYA_EDWI9  (C5BE36    ), SLYA_EDWTA  (Q9F6B2    ), 
SLYA_KLEP3  (B5XWN4    ), SLYA_PECAS  (Q6D5V7    ), SLYA_PECCC  (Q9RB09    ), 
SLYA_PECCP  (C6DK30    ), SLYA_SALCH  (P61090    ), SLYA_SALPA  (Q5PH01    ), 
SLYA_SALPC  (C0Q5T8    ), SLYA_SALPK  (B5BKC5    ), SLYA_SALTI  (P61091    ), 
SLYA_SALTY  (P40676    ), SLYA_SERP5  (A8GDX5    ), SLYA_SERS3  (Q9RA96    ), 
SLYA_SHIB3  (B2U2E2    ), SLYA_SHIFL  (P0A8W4    ), SLYA_SODGM  (Q2NT07    ), 
SLYA_WIGBR  (Q8D2L8    ), SLYA_YERE8  (A1JNY1    ), SLYA_YEREN  (Q9S3W0    ), 
SLYA_YERP3  (A7FHL4    ), SLYA_YERPA  (Q1C786    ), SLYA_YERPE  (P69988    ), 
SLYA_YERPG  (A9QZA1    ), SLYA_YERPN  (Q1CIM0    ), SLYA_YERPP  (A4TIR6    ), 
SLYA_YERPS  (P69989    ), SLYA_YERPY  (B1JJ73    ), Y2060_STAAN (P62087    ), 
Y2140_MYCLE (O33060    ), Y2155_STAAS (Q6G757    ), Y2183_STAAW (Q8NVA6    ), 
Y2256_STAAC (Q5HDU4    ), Y2265_STAAM (P62086    ), Y2349_STAAR (Q6GEG9    ), 
Y2887_MYCTO (P9WME8    ), Y2887_MYCTU (P9WME9    ), Y2911_MYCBO (P67748    ), 
Y880_MYCTO  (P9WMF0    ), Y880_MYCTU  (P9WMF1    ), Y904_MYCBO  (P67746    ), 
YETL_BACSU  (O31541    ), YHJH_BACSU  (Q796S4    ), YKOM_BACSU  (O34949    ), 
YWAE_BACSU  (P25150    ), YXAD_BACSU  (P42103    ), YYBA_BACSU  (P37503    )
» more

UniProtKB/Swiss-Prot
False negative sequences
66 sequences

ADCR_STRP2  (Q04I02    ), ADCR_STRP6  (Q5XEA3    ), MEXR_PSEAE  (P52003    ), 
MMPR5_MYCTU (I6Y8F7    ), NICR_PSEPK  (Q88FY0    ), OHRR_BACSU  (O34777    ), 
SARZ_STAA3  (Q2FEB2    ), SARZ_STAA8  (Q2FVN3    ), SARZ_STAAB  (Q2YZ47    ), 
SARZ_STAAC  (Q5HDG9    ), SARZ_STAAM  (Q99RP3    ), SARZ_STAAN  (Q7A3V0    ), 
SARZ_STAAR  (Q6GE46    ), SARZ_STAAS  (Q6G6T5    ), SARZ_STAAW  (Q8NV32    ), 
SARZ_STAEQ  (Q5HLK8    ), SARZ_STAES  (Q8CN77    ), SARZ_STAHJ  (Q4L8Q3    ), 
SARZ_STAS1  (Q49ZX3    ), SGRR_ECO57  (Q8XA02    ), SGRR_ECOK1  (A1A7B8    ), 
SGRR_ECOL5  (Q0TLR9    ), SGRR_ECOL6  (Q8FL80    ), SGRR_ECOLI  (P33595    ), 
SGRR_ECOUT  (Q1RGC7    ), SGRR_PECAS  (Q6D0F8    ), SGRR_PHOLL  (Q7N125    ), 
SGRR_SALCH  (Q57TF2    ), SGRR_SALPA  (Q5PDG5    ), SGRR_SALTI  (Q8Z9I4    ), 
SGRR_SALTY  (Q8ZRV0    ), SGRR_SHIBS  (Q326G6    ), SGRR_SHIDS  (Q32K24    ), 
SGRR_SHIF8  (Q0T8C8    ), SGRR_SHIFL  (Q83SP3    ), SGRR_SHISS  (Q3Z5U2    ), 
SGRR_YERE8  (A1JJG7    ), SGRR_YERPA  (Q1C1Y8    ), SGRR_YERPE  (Q74Q56    ), 
SGRR_YERPN  (Q1CMQ0    ), SGRR_YERPP  (A4TQA7    ), SGRR_YERPS  (Q66EM6    ), 
SLYA_PHOLL  (Q8KM02    ), TCAR_STAAC  (Q9F4G3    ), TCAR_STAAE  (A6QJJ8    ), 
Y1720_BACAH (A0RCV1    ), Y1758_BACCZ (Q63CL4    ), Y1775_BACHK (Q6HK19    ), 
Y1936_BACCR (Q81EN2    ), Y1941_BACAN (Q81RU6    ), Y2019_BACC1 (Q739W8    ), 
YBFA_BACSU  (O31443    ), YCGE_BACSU  (O31472    ), YDCH_BACSU  (P96625    ), 
YDGG_BACSU  (P96705    ), YDGJ_BACSU  (P96708    ), YFIV_BACSU  (O31564    ), 
YHBI_BACSU  (O31592    ), YHJP_BACSU  (O07570    ), YPOP_BACSU  (P54182    ), 
YSMB_BACSU  (P97247    ), YUSO_BACSU  (O32181    ), YVNA_BACSU  (O34692    ), 
YWHA_BACSU  (P70993    ), YWOH_BACSU  (P94578    ), ZITR_LACLM  (A2RNS2    )
» more

PDB
[Detailed view]
22 PDB

1JGS; 2BV6; 2FXA; 3DEU; 3Q5F; 3QPT; 3VB2; 3VOD; 3VOE; 4AIH; 4AIJ; 4AIK; 4EM0; 4EM1; 4EM2; 4JBA; 4YIF; 5H3R; 5HSM; 5HSO; 5X7Z; 5X80
» more

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