PROSITE entry PS01117
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General information about the entry
| Entry name [info] | HTH_MARR_1 |
| Accession [info] | PS01117 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00861 |
Name and characterization of the entry
| Description [info] | MarR-type HTH domain signature. |
| Pattern [info] |
[STNAQ]-[LIAMV]-x(0,1)-[RNGSYKE]-x(4,5)-[LM]-[EIVLA]-x(2)-[GESD]- [LFYWHA]-[LIVC]-x(7)-[DNS]-[RKQG]-[RK]-x(6)-[TS]-x(2)-[GAS]. |
Numerical results [info]
| Total number of hits | 124 in 124 different sequences |
| Number of true positive hits | 124 in 124 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 69 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 64.25 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
124 sequences
BADR_RHOPA (O07458), BILQ_CLOS6 (E7GT88), EXPG_RHIME (P96440), FARR_NEIGO (P0DPR8), HCRR_THAAR (O33817), HOSA_ECO11 (Q9F8R8), HOSA_ECO27 (P69782), HOSA_ECO57 (Q7ABA6), HOSA_ECOLX (Q93CC3), HPCR_ECOLX (P62573), HPCR_SHIFL (P62574), HPR_BACAA (C3P2U9), HPR_BACAC (C3LCW8), HPR_BACAH (A0RAQ6), HPR_BACAN (Q81JG1), HPR_BACC0 (B7JCX5), HPR_BACC1 (Q73CB7), HPR_BACC2 (B7IKC1), HPR_BACC3 (C1EKG1), HPR_BACC4 (B7HG19), HPR_BACC7 (B7HZH8), HPR_BACCN (A7GLZ1), HPR_BACCQ (B9IT66), HPR_BACCR (Q813W6), HPR_BACCZ (Q63EV6), HPR_BACHK (Q6HMB8), HPR_BACLD (Q65LS8), HPR_BACMK (A9VI69), HPR_BACP2 (A8FBL1), HPR_BACSU (P11065), HPR_BACVZ (A7Z311), HPR_EXIS2 (B1YK88), HPR_GEOKA (Q5L293), HPR_GEOSW (C5D6L6), HPR_GEOTN (A4IKT9), HPR_HALH5 (Q9KDM7), HPR_LYSSC (B1HVK6), HPR_SHOC1 (Q5WHU1), HTMR_MYCBO (P67748), HTMR_MYCTO (P9WME8), HTMR_MYCTU (P9WME9), MARR_ECOLI (P27245), MARR_SALTI (P0A2T5), MARR_SALTY (P0A2T4), MGRA_STAA8 (Q2G0B1), MGRA_STAAC (Q5HHY2), MGRA_STAAM (Q99VT5), MGRA_STAAN (Q7A6X2), MGRA_STAAR (Q6GIV6), MGRA_STAAS (Q6GBE4), MGRA_STAAU (P0C1S0), MGRA_STAAW (Q7A1J9), MHQR_BACSU (O31672), MPRA_ECO57 (P0ACS1), MPRA_ECOL6 (P0ACS0), MPRA_ECOLI (P0ACR9), PAPX_ECOLX (P42193), PCHR_BACSU (P40762), PECS_DICD3 (P42195), PETP_RHOCB (P31078), PRSX_ECOL6 (P62089), PRSX_ECOLX (P62088), SLYA_BLOFL (Q7VR54), SLYA_BLOPB (Q492T9), SLYA_ECO24 (A7ZMA4), SLYA_ECO27 (P0A4U5), SLYA_ECO45 (B7M9Z6), SLYA_ECO55 (B7L5J5), SLYA_ECO57 (P0A8W3), SLYA_ECO5E (B5Z476), SLYA_ECO7I (B7NTZ0), SLYA_ECO81 (B7MVC0), SLYA_ECO8A (B7M0J9), SLYA_ECOBW (C4ZYA5), SLYA_ECODH (B1XFV4), SLYA_ECOHS (A8A0I5), SLYA_ECOL6 (P0A4U4), SLYA_ECOLI (P0A8W2), SLYA_ECOLU (B7NB96), SLYA_ECOSM (B1LEP4), SLYA_EDWI9 (C5BE36), SLYA_EDWTA (Q9F6B2), SLYA_KLEP3 (B5XWN4), SLYA_PECAS (Q6D5V7), SLYA_PECCC (Q9RB09), SLYA_PECCP (C6DK30), SLYA_SALCH (P61090), SLYA_SALPA (Q5PH01), SLYA_SALPC (C0Q5T8), SLYA_SALPK (B5BKC5), SLYA_SALTI (P61091), SLYA_SALTY (P40676), SLYA_SERP5 (A8GDX5), SLYA_SERS3 (Q9RA96), SLYA_SHIB3 (B2U2E2), SLYA_SHIFL (P0A8W4), SLYA_SODGM (Q2NT07), SLYA_WIGBR (Q8D2L8), SLYA_YERE8 (A1JNY1), SLYA_YEREN (Q9S3W0), SLYA_YERP3 (A7FHL4), SLYA_YERPA (Q1C786), SLYA_YERPE (P69988), SLYA_YERPG (A9QZA1), SLYA_YERPN (Q1CIM0), SLYA_YERPP (A4TIR6), SLYA_YERPS (P69989), SLYA_YERPY (B1JJ73), Y2060_STAAN (P62087), Y2140_MYCLE (O33060), Y2155_STAAS (Q6G757), Y2183_STAAW (Q8NVA6), Y2256_STAAC (Q5HDU4), Y2265_STAAM (P62086), Y2349_STAAR (Q6GEG9), Y880_MYCTO (P9WMF0), Y880_MYCTU (P9WMF1), Y904_MYCBO (P67746), YETL_BACSU (O31541), YHJH_BACSU (Q796S4), YKOM_BACSU (O34949), YWAE_BACSU (P25150), YXAD_BACSU (P42103), YYBA_BACSU (P37503)» more
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| UniProtKB/Swiss-Prot False negative sequences |
69 sequences
ADCR_STRP2 (Q04I02), ADCR_STRP6 (Q5XEA3), BILQ_CLOD3 (P0DXC9), IACR_PSEPU (B0FXI7), MEXR_PSEAE (P52003), MMPR5_MYCTU (I6Y8F7), NICR_PSEPK (Q88FY0), OHRR_BACSU (O34777), SARZ_STAA3 (Q2FEB2), SARZ_STAA8 (Q2FVN3), SARZ_STAAB (Q2YZ47), SARZ_STAAC (Q5HDG9), SARZ_STAAM (Q99RP3), SARZ_STAAN (Q7A3V0), SARZ_STAAR (Q6GE46), SARZ_STAAS (Q6G6T5), SARZ_STAAW (Q8NV32), SARZ_STAEQ (Q5HLK8), SARZ_STAES (Q8CN77), SARZ_STAHJ (Q4L8Q3), SARZ_STAS1 (Q49ZX3), SGRR_ECO57 (Q8XA02), SGRR_ECOK1 (A1A7B8), SGRR_ECOL5 (Q0TLR9), SGRR_ECOL6 (Q8FL80), SGRR_ECOLI (P33595), SGRR_ECOUT (Q1RGC7), SGRR_PECAS (Q6D0F8), SGRR_PHOLL (Q7N125), SGRR_SALCH (Q57TF2), SGRR_SALPA (Q5PDG5), SGRR_SALTI (Q8Z9I4), SGRR_SALTY (Q8ZRV0), SGRR_SHIBS (Q326G6), SGRR_SHIDS (Q32K24), SGRR_SHIF8 (Q0T8C8), SGRR_SHIFL (Q83SP3), SGRR_SHISS (Q3Z5U2), SGRR_YERE8 (A1JJG7), SGRR_YERPA (Q1C1Y8), SGRR_YERPE (Q74Q56), SGRR_YERPN (Q1CMQ0), SGRR_YERPP (A4TQA7), SGRR_YERPS (Q66EM6), SLYA_PHOLL (Q8KM02), TCAR_STAAC (Q9F4G3), TCAR_STAAE (A6QJJ8), TTMR_METEP (P0DX95), Y1720_BACAH (A0RCV1), Y1758_BACCZ (Q63CL4), Y1775_BACHK (Q6HK19), Y1936_BACCR (Q81EN2), Y1941_BACAN (Q81RU6), Y2019_BACC1 (Q739W8), YBFA_BACSU (O31443), YCGE_BACSU (O31472), YDCH_BACSU (P96625), YDGG_BACSU (P96705), YDGJ_BACSU (P96708), YFIV_BACSU (O31564), YHBI_BACSU (O31592), YHJP_BACSU (O07570), YPOP_BACSU (P54182), YSMB_BACSU (P97247), YUSO_BACSU (O32181), YVNA_BACSU (O34692), YWHA_BACSU (P70993), YWOH_BACSU (P94578), ZITR_LACLM (A2RNS2)» more |
| PDB [Detailed view] |
25 PDB
1JGS; 2BV6; 2FXA; 3DEU; 3Q5F; 3QPT; 3VB2; 3VOD; 3VOE; 4AIH; 4AIJ; 4AIK; 4EM0; 4EM1; 4EM2; 4JBA; 4YIF; 5H3R; 5HSM; 5HSO; 5X7Z; 5X80; 7WZE; 8AGA; 8PQ4 » more |