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| Entry: PS01117 |
General information about the entry
| Entry name [info] | HTH_MARR_1 |
| Accession [info] | PS01117 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 05-DEC-2018 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00861 |
Name and characterization of the entry
| Description [info] | MarR-type HTH domain signature. |
| Pattern [info] |
[STNAQ]-[LIAMV]-x(0,1)-[RNGSYKE]-x(4,5)-[LM]-[EIVLA]-x(2)-[GESD]- [LFYWHA]-[LIVC]-x(7)-[DNS]-[RKQG]-[RK]-x(6)-[TS]-x(2)-[GAS]. |
Numerical results [info]
| Total number of hits | 122 in 122 different sequences |
| Number of true positive hits | 122 in 122 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 66 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 64.89 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
122 sequences
BADR_RHOPA (O07458 ), EXPG_RHIME (P96440 ), HCRR_THAAR (O33817 ), HOSA_ECO11 (Q9F8R8 ), HOSA_ECO27 (P69782 ), HOSA_ECO57 (Q7ABA6 ), HOSA_ECOLX (Q93CC3 ), HPCR_ECOLX (P62573 ), HPCR_SHIFL (P62574 ), HPR_BACAA (C3P2U9 ), HPR_BACAC (C3LCW8 ), HPR_BACAH (A0RAQ6 ), HPR_BACAN (Q81JG1 ), HPR_BACC0 (B7JCX5 ), HPR_BACC1 (Q73CB7 ), HPR_BACC2 (B7IKC1 ), HPR_BACC3 (C1EKG1 ), HPR_BACC4 (B7HG19 ), HPR_BACC7 (B7HZH8 ), HPR_BACCN (A7GLZ1 ), HPR_BACCQ (B9IT66 ), HPR_BACCR (Q813W6 ), HPR_BACCZ (Q63EV6 ), HPR_BACHD (Q9KDM7 ), HPR_BACHK (Q6HMB8 ), HPR_BACLD (Q65LS8 ), HPR_BACP2 (A8FBL1 ), HPR_BACSK (Q5WHU1 ), HPR_BACSU (P11065 ), HPR_BACVZ (A7Z311 ), HPR_BACWK (A9VI69 ), HPR_EXIS2 (B1YK88 ), HPR_GEOKA (Q5L293 ), HPR_GEOSW (C5D6L6 ), HPR_GEOTN (A4IKT9 ), HPR_LYSSC (B1HVK6 ), MARR_ECOLI (P27245 ), MARR_SALTI (P0A2T5 ), MARR_SALTY (P0A2T4 ), MGRA_STAA8 (Q2G0B1 ), MGRA_STAAC (Q5HHY2 ), MGRA_STAAM (Q99VT5 ), MGRA_STAAN (Q7A6X2 ), MGRA_STAAR (Q6GIV6 ), MGRA_STAAS (Q6GBE4 ), MGRA_STAAU (P0C1S0 ), MGRA_STAAW (Q7A1J9 ), MHQR_BACSU (O31672 ), MPRA_ECO57 (P0ACS1 ), MPRA_ECOL6 (P0ACS0 ), MPRA_ECOLI (P0ACR9 ), PAPX_ECOLX (P42193 ), PCHR_BACSU (P40762 ), PECS_DICD3 (P42195 ), PETP_RHOCB (P31078 ), PRSX_ECOL6 (P62089 ), PRSX_ECOLX (P62088 ), SLYA_BLOFL (Q7VR54 ), SLYA_BLOPB (Q492T9 ), SLYA_ECO24 (A7ZMA4 ), SLYA_ECO27 (P0A4U5 ), SLYA_ECO45 (B7M9Z6 ), SLYA_ECO55 (B7L5J5 ), SLYA_ECO57 (P0A8W3 ), SLYA_ECO5E (B5Z476 ), SLYA_ECO7I (B7NTZ0 ), SLYA_ECO81 (B7MVC0 ), SLYA_ECO8A (B7M0J9 ), SLYA_ECOBW (C4ZYA5 ), SLYA_ECODH (B1XFV4 ), SLYA_ECOHS (A8A0I5 ), SLYA_ECOL6 (P0A4U4 ), SLYA_ECOLI (P0A8W2 ), SLYA_ECOLU (B7NB96 ), SLYA_ECOSM (B1LEP4 ), SLYA_EDWI9 (C5BE36 ), SLYA_EDWTA (Q9F6B2 ), SLYA_KLEP3 (B5XWN4 ), SLYA_PECAS (Q6D5V7 ), SLYA_PECCC (Q9RB09 ), SLYA_PECCP (C6DK30 ), SLYA_SALCH (P61090 ), SLYA_SALPA (Q5PH01 ), SLYA_SALPC (C0Q5T8 ), SLYA_SALPK (B5BKC5 ), SLYA_SALTI (P61091 ), SLYA_SALTY (P40676 ), SLYA_SERP5 (A8GDX5 ), SLYA_SERS3 (Q9RA96 ), SLYA_SHIB3 (B2U2E2 ), SLYA_SHIFL (P0A8W4 ), SLYA_SODGM (Q2NT07 ), SLYA_WIGBR (Q8D2L8 ), SLYA_YERE8 (A1JNY1 ), SLYA_YEREN (Q9S3W0 ), SLYA_YERP3 (A7FHL4 ), SLYA_YERPA (Q1C786 ), SLYA_YERPE (P69988 ), SLYA_YERPG (A9QZA1 ), SLYA_YERPN (Q1CIM0 ), SLYA_YERPP (A4TIR6 ), SLYA_YERPS (P69989 ), SLYA_YERPY (B1JJ73 ), Y2060_STAAN (P62087 ), Y2140_MYCLE (O33060 ), Y2155_STAAS (Q6G757 ), Y2183_STAAW (Q8NVA6 ), Y2256_STAAC (Q5HDU4 ), Y2265_STAAM (P62086 ), Y2349_STAAR (Q6GEG9 ), Y2887_MYCTO (P9WME8 ), Y2887_MYCTU (P9WME9 ), Y2911_MYCBO (P67748 ), Y880_MYCTO (P9WMF0 ), Y880_MYCTU (P9WMF1 ), Y904_MYCBO (P67746 ), YETL_BACSU (O31541 ), YHJH_BACSU (Q796S4 ), YKOM_BACSU (O34949 ), YWAE_BACSU (P25150 ), YXAD_BACSU (P42103 ), YYBA_BACSU (P37503 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
66 sequences
ADCR_STRP2 (Q04I02 ), ADCR_STRP6 (Q5XEA3 ), MEXR_PSEAE (P52003 ), MMPR5_MYCTU (I6Y8F7 ), NICR_PSEPK (Q88FY0 ), OHRR_BACSU (O34777 ), SARZ_STAA3 (Q2FEB2 ), SARZ_STAA8 (Q2FVN3 ), SARZ_STAAB (Q2YZ47 ), SARZ_STAAC (Q5HDG9 ), SARZ_STAAM (Q99RP3 ), SARZ_STAAN (Q7A3V0 ), SARZ_STAAR (Q6GE46 ), SARZ_STAAS (Q6G6T5 ), SARZ_STAAW (Q8NV32 ), SARZ_STAEQ (Q5HLK8 ), SARZ_STAES (Q8CN77 ), SARZ_STAHJ (Q4L8Q3 ), SARZ_STAS1 (Q49ZX3 ), SGRR_ECO57 (Q8XA02 ), SGRR_ECOK1 (A1A7B8 ), SGRR_ECOL5 (Q0TLR9 ), SGRR_ECOL6 (Q8FL80 ), SGRR_ECOLI (P33595 ), SGRR_ECOUT (Q1RGC7 ), SGRR_PECAS (Q6D0F8 ), SGRR_PHOLL (Q7N125 ), SGRR_SALCH (Q57TF2 ), SGRR_SALPA (Q5PDG5 ), SGRR_SALTI (Q8Z9I4 ), SGRR_SALTY (Q8ZRV0 ), SGRR_SHIBS (Q326G6 ), SGRR_SHIDS (Q32K24 ), SGRR_SHIF8 (Q0T8C8 ), SGRR_SHIFL (Q83SP3 ), SGRR_SHISS (Q3Z5U2 ), SGRR_YERE8 (A1JJG7 ), SGRR_YERPA (Q1C1Y8 ), SGRR_YERPE (Q74Q56 ), SGRR_YERPN (Q1CMQ0 ), SGRR_YERPP (A4TQA7 ), SGRR_YERPS (Q66EM6 ), SLYA_PHOLL (Q8KM02 ), TCAR_STAAC (Q9F4G3 ), TCAR_STAAE (A6QJJ8 ), Y1720_BACAH (A0RCV1 ), Y1758_BACCZ (Q63CL4 ), Y1775_BACHK (Q6HK19 ), Y1936_BACCR (Q81EN2 ), Y1941_BACAN (Q81RU6 ), Y2019_BACC1 (Q739W8 ), YBFA_BACSU (O31443 ), YCGE_BACSU (O31472 ), YDCH_BACSU (P96625 ), YDGG_BACSU (P96705 ), YDGJ_BACSU (P96708 ), YFIV_BACSU (O31564 ), YHBI_BACSU (O31592 ), YHJP_BACSU (O07570 ), YPOP_BACSU (P54182 ), YSMB_BACSU (P97247 ), YUSO_BACSU (O32181 ), YVNA_BACSU (O34692 ), YWHA_BACSU (P70993 ), YWOH_BACSU (P94578 ), ZITR_LACLM (A2RNS2 )» more |
| PDB [Detailed view] |
14 PDB
1JGS; 2FXA; 3Q5F; 3VB2; 3VOD; 3VOE; 4AIJ; 4AIK; 4EM0; 4EM1; 4EM2; 4YIF; 5H3R; 5X80 » more |
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