PROSITE entry PS01130

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General information about the entry

Entry name [info]	SLC26A
Accession [info]	PS01130
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00870

Name and characterization of the entry

Description [info]	SLC26A transporters signature.
Pattern [info]	[PAV]-x-[FYLCVI]-[GS]-L-Y-[STAG]-[STAGL]-x(4)-[LIVFYA]-[LIVMST]-[YI]- x(3)-[GA]-[GST]-[SRV]-[KRNP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	54 in 54 different sequences
Number of true positive hits	54 in 54 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	12
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	81.82 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

54 sequences

CYS14_NEUCR (P23622), DAUA_ECO57  (P0AFR3), DAUA_ECOLI  (P0AFR2),

NO70_SOYBN  (Q02920), S2611_BOVIN (Q58DD2), S2611_CAVPO (G3C7W6), 
S2611_HUMAN (Q86WA9), S2611_MOUSE (Q80ZD3), S26A1_HUMAN (Q9H2B4), 
S26A1_MOUSE (P58735), S26A1_RAT   (P45380), S26A2_BOVIN (Q9BEG8), 
S26A2_BUBBU (Q69DJ1), S26A2_HORSE (Q65AC2), S26A2_HUMAN (P50443), 
S26A2_MOUSE (Q62273), S26A2_RAT   (O70531), S26A2_SHEEP (Q9GJY3), 
S26A3_HUMAN (P40879), S26A3_MOUSE (Q9WVC8), S26A3_RAT   (Q924C9), 
S26A4_HUMAN (O43511), S26A4_MOUSE (Q9R155), S26A4_RAT   (Q9R154), 
S26A5_CHICK (A0FKN5), S26A5_DANRE (Q7T2C4), S26A5_HUMAN (P58743), 
S26A5_MERUN (Q9JKQ2), S26A5_MOUSE (Q99NH7), S26A5_RAT   (Q9EPH0), 
S26A5_TURTR (D7PC76), S26A6_HUMAN (Q9BXS9), S26A6_MOUSE (Q8CIW6), 
SUL1_YEAST  (P38359), SUL2_YEAST  (Q12325), SULH1_SCHPO (O74377), 
SULP3_CAEEL (Q94225), SULX_YEAST  (P53394), SUT11_ARATH (Q9SAY1), 
SUT12_ARATH (Q9MAX3), SUT13_ARATH (Q9FEP7), SUT1_STYHA  (P53391), 
SUT21_ARATH (O04722), SUT22_ARATH (P92946), SUT2_STYHA  (P53392), 
SUT31_ARATH (Q9SV13), SUT32_ARATH (O04289), SUT33_ARATH (Q9SXS2), 
SUT34_ARATH (Q9LW86), SUT35_ARATH (Q94LW6), SUT3_STYHA  (P53393), 
SUT41_ARATH (Q9FY46), SUT42_ARATH (Q8GYH8), YBAR_BACSU  (P55189)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

12 sequences

S2610_HUMAN (Q8NG04), S2610_MOUSE (Q5EBI0), S26A7_HUMAN (Q8TE54),

S26A7_MOUSE (Q8R2Z3), S26A7_PONAB (Q5RAL2), S26A7_RABIT (Q8HY59), 
S26A8_BOVIN (A6QNW6), S26A8_HUMAN (Q96RN1), S26A8_MACFA (Q4R445), 
S26A8_MOUSE (Q8R0C3), SULH2_SCHPO (Q9URY8), SULH3_SCHPO (O59782)

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PDB
[Detailed view]

23 PDB

7LGU; 7LGW; 7LH2; 7LH3; 7LHV; 7S8X; 7S9A; 7S9B; 7S9C; 7S9D; 7S9E; 7SUN; 7WK1; 7WK7; 7WL2; 7WL7; 7WL9; 7WLA; 7WLE; 7XLM; 7XUJ; 7XUL; 8OPQ
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