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PROSITE entry PS01156


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General information about the entry

Entry name [info] TONB_DEPENDENT_REC_2
Accession [info] PS01156
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00354
Associated ProRule [info] PRU10144

Name and characterization of the entry

Description [info] TonB-dependent receptor (TBDR) proteins signature 2.
Pattern [info] 
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]-
[LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 81 in 81 different sequences
Number of true positive hits 80 in 80 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 41
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.77 %
Recall (true positives / (true positives + false negatives)) 66.12 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 80 sequences 

BTUB_CITFR  (O52903), BTUB_CROS8  (A7ML93), BTUB_ECO24  (A7ZUI6), 

BTUB_ECO57  (Q8X714), BTUB_ECOHS  (A8A774), BTUB_ECOK1  (A1AIE8), 
BTUB_ECOL5  (Q0TA90), BTUB_ECOL6  (Q8CVJ0), BTUB_ECOLI  (P06129), 
BTUB_ECOLX  (Q93SE0), BTUB_ECOUT  (Q1R3U1), BTUB_ENT38  (A4WG45), 
BTUB_PECAS  (Q6CZB5), BTUB_SALCH  (Q57H87), BTUB_SALPA  (Q5PK67), 
BTUB_SALTI  (Q8Z314), BTUB_SALTY  (P37409), BTUB_SHIDS  (Q32AE6), 
BTUB_SHIF8  (Q0SY25), BTUB_SHIFL  (Q83IS4), BTUB_SHISS  (Q3YV10), 
BTUB_VIBC3  (A5F4P6), BTUB_VIBCH  (Q9KVI9), BTUB_VIBCM  (C3LPZ6), 
BTUB_VIBPA  (Q87KN9), BTUB_VIBVU  (Q8DD41), BTUB_YERP3  (A7FD14), 
BTUB_YERPA  (Q1CBU1), BTUB_YERPE  (Q8ZAA1), BTUB_YERPN  (Q1CNP0), 
BTUB_YERPP  (A4TRG0), BTUB_YERPS  (Q66G57), CIRA_ECOLI  (P17315), 
FATA_VIBA7  (P11461), FCUA_YEREN  (Q05202), FECA_ECOLI  (P13036), 
FEPA_ECOLI  (P05825), FHUA_ECOLI  (P06971), FHUE_ECOLI  (P16869), 
FOXA_YEREN  (Q01674), FPTA_PSEAE  (P42512), FPVA_PSEAE  (P48632), 
HGBA_HAEIF  (Q9KIV2), HGBB_HAEIF  (Q9KIV1), HGBC_HAEIF  (Q9KIV0), 
HGP1_HAEIN  (P44795), HGP2_HAEIN  (P44809), HGP3_HAEIN  (P44836), 
HGP4_HAEIN  (Q57408), HGPA_HAEIF  (Q9ZA21), HGPB_HAEIF  (O87296), 
HGPC_HAEIF  (Q9X442), HHUA_HAEIF  (Q48153), HPUB_NEIMA  (Q9JWA2), 
HPUB_NEIMC  (P96949), HXUC1_HAEIN (P44600), HXUC2_HAEIF (P45357), 
HXUC_HAEI8  (Q4QNS6), IRGA_VIBC3  (A5F9G0), IRGA_VIBCH  (P0C6R0), 
IUTA_ECOLX  (P14542), IUTA_KLEPN  (Q6U607), LBPA_NEIMA  (Q9JTK4), 
LBPA_NEIMB  (Q06379), PBUA_PSEU4  (Q08017), PFEA_PSEAE  (Q05098), 
PIRA_ACIB2  (D0C8V9), PIRA_PSEAE  (Q9I527), PUPA_PSEPU  (P25184), 
PUPB_PSEPU  (P38047), TBPA1_NEIMI (Q09056), TBPA2_NEIMI (Q06987), 
TBPA_HAEIN  (P44970), TBPA_NEIGO  (Q01996), TBPA_NEIMB  (Q9K0U9), 
TDHA_HAEI8  (Q4QP67), TDHA_HAEIN  (P44523), VUUA_VIBVL  (Q9L9Z9), 
Y1217_HAEIN (P45114), Y1497_NEIMB (Q7DDB6)
» more

UniProtKB/Swiss-Prot
False negative sequences		 41 sequences 

BFRD_BORPE  (P81549), BHUA_BRUA2  (Q2YJB2), BHUA_BRUAB  (Q576D7), 

BHUA_BRUME  (Q8YDS0), BHUA_BRUO2  (A5VW32), BTUB_PHOLL  (Q7MYE3), 
BTUB_PHOPR  (Q6LLU3), BTUB_VIBC1  (A7MXY8), BTUB_VIBVY  (Q7MQ42), 
CEAB_ECOLX  (P05819), CEAD_ECOLX  (P17998), CEAM_ECOLX  (P05820), 
CNTO_PSEAB  (A0A0H2ZI93), CNTO_PSEAE  (Q9HUX3), FCT_DICD3   (Q47162), 
FIU_ECO57   (Q8X7W7), FIU_ECOL6   (Q8CW90), FIU_ECOLI   (P75780), 
FIU_ECOUT   (Q1REC0), FOXA_SALTS  (E1W8M5), FOXA_SALTY  (P0CL48), 
FYUA_YERE8  (A1JTG3), FYUA_YEREN  (P0C2M9), FYUA_YERPE  (P46359), 
HEMR_YEREN  (P31499), HGBA_HAEDU  (Q47952), HMUR_YERPE  (Q56989), 
IACT_NOSS1  (Q8YQ14), OAR_MYXXA   (P38370), PIUA_ACIB2  (D0CAH3), 
PIUA_PSEAE  (G3XCY8), PLH26_FORAG (T2KM18), PLH39_FORAG (T2KMI3), 
PLH3_FORAG  (T2KPJ3), PQQU_ECOLI  (P76115), RHTA_RHIME  (Q9Z3Q5), 
SCHT_NOSS1  (Q8YZR0), SUSC_BACTN  (Q8A1G1), TDHA_HAEDU  (Q7VNU1), 
Y146A_HAEIN (O86241), Y964_NEIMB  (Q9JZN9)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

SLAP1_THET8 (Q5SH37)


				
	

	

		PDB
[Detailed view]		
		
			65 PDB
			


			1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 
			
				1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 
				2GUF; 2HDF; 2HDI; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 
				2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X; 4CU4; 5FR8; 5M9B; 5MZS; 5NC3; 
				5NC4; 5NR2; 5ODW; 5OUT; 6E4V; 6I2J; 6Q5E; 6R1F; 6Y47; 6YY5; 6Z2N; 6Z33; 
				7NSU; 7OBW; 8A60; 8A8C; 8B14
			
			

			» more