PROSITE entry PS01156
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General information about the entry
Entry name [info] | TONB_DEPENDENT_REC_2 |
Accession [info] | PS01156 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00354 |
Associated ProRule [info] | PRU10144 |
Name and characterization of the entry
Description [info] | TonB-dependent receptor (TBDR) proteins signature 2. |
Pattern [info] |
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]- [LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>. |
Numerical results [info]
Total number of hits | 78 in 78 different sequences |
Number of true positive hits | 77 in 77 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 36 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 98.72 % |
Recall (true positives / (true positives + false negatives)) | 68.14 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
77 sequences
BTUB_CITFR (O52903 ), BTUB_CROS8 (A7ML93 ), BTUB_ECO24 (A7ZUI6 ), BTUB_ECO57 (Q8X714 ), BTUB_ECOHS (A8A774 ), BTUB_ECOK1 (A1AIE8 ), BTUB_ECOL5 (Q0TA90 ), BTUB_ECOL6 (Q8CVJ0 ), BTUB_ECOLI (P06129 ), BTUB_ECOLX (Q93SE0 ), BTUB_ECOUT (Q1R3U1 ), BTUB_ENT38 (A4WG45 ), BTUB_PECAS (Q6CZB5 ), BTUB_SALCH (Q57H87 ), BTUB_SALPA (Q5PK67 ), BTUB_SALTI (Q8Z314 ), BTUB_SALTY (P37409 ), BTUB_SHIDS (Q32AE6 ), BTUB_SHIF8 (Q0SY25 ), BTUB_SHIFL (Q83IS4 ), BTUB_SHISS (Q3YV10 ), BTUB_VIBC3 (A5F4P6 ), BTUB_VIBCH (Q9KVI9 ), BTUB_VIBCM (C3LPZ6 ), BTUB_VIBPA (Q87KN9 ), BTUB_VIBVU (Q8DD41 ), BTUB_YERP3 (A7FD14 ), BTUB_YERPA (Q1CBU1 ), BTUB_YERPE (Q8ZAA1 ), BTUB_YERPN (Q1CNP0 ), BTUB_YERPP (A4TRG0 ), BTUB_YERPS (Q66G57 ), CIRA_ECOLI (P17315 ), FATA_VIBA7 (P11461 ), FCUA_YEREN (Q05202 ), FECA_ECOLI (P13036 ), FEPA_ECOLI (P05825 ), FHUA_ECOLI (P06971 ), FHUE_ECOLI (P16869 ), FOXA_YEREN (Q01674 ), FPTA_PSEAE (P42512 ), FPVA_PSEAE (P48632 ), HGBA_HAEIF (Q9KIV2 ), HGBB_HAEIF (Q9KIV1 ), HGBC_HAEIF (Q9KIV0 ), HGP1_HAEIN (P44795 ), HGP2_HAEIN (P44809 ), HGP3_HAEIN (P44836 ), HGP4_HAEIN (Q57408 ), HGPA_HAEIF (Q9ZA21 ), HGPB_HAEIF (O87296 ), HGPC_HAEIF (Q9X442 ), HHUA_HAEIF (Q48153 ), HPUB_NEIMA (Q9JWA2 ), HPUB_NEIMC (P96949 ), HXUC1_HAEIN (P44600 ), HXUC2_HAEIF (P45357 ), HXUC_HAEI8 (Q4QNS6 ), IRGA_VIBC3 (A5F9G0 ), IRGA_VIBCH (P0C6R0 ), IUTA_ECOLX (P14542 ), IUTA_KLEPN (Q6U607 ), LBPA_NEIMA (Q9JTK4 ), LBPA_NEIMB (Q06379 ), PBUA_PSEU4 (Q08017 ), PFEA_PSEAE (Q05098 ), PUPA_PSEPU (P25184 ), PUPB_PSEPU (P38047 ), TBPA1_NEIMI (Q09056 ), TBPA2_NEIMI (Q06987 ), TBPA_HAEIN (P44970 ), TBPA_NEIGO (Q01996 ), TBPA_NEIMB (Q9K0U9 ), TDHA_HAEI8 (Q4QP67 ), TDHA_HAEIN (P44523 ), Y1217_HAEIN (P45114 ), Y1497_NEIMB (Q7DDB6 )» more
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UniProtKB/Swiss-Prot False negative sequences |
36 sequences
BFRD_BORPE (P81549 ), BHUA_BRUA2 (Q2YJB2 ), BHUA_BRUAB (Q576D7 ), BHUA_BRUME (Q8YDS0 ), BHUA_BRUO2 (A5VW32 ), BTUB_PHOLL (Q7MYE3 ), BTUB_PHOPR (Q6LLU3 ), BTUB_VIBC1 (A7MXY8 ), BTUB_VIBVY (Q7MQ42 ), CEAB_ECOLX (P05819 ), CEAD_ECOLX (P17998 ), CEAM_ECOLX (P05820 ), CNTO_PSEAB (A0A0H2ZI93), CNTO_PSEAE (Q9HUX3 ), FCT_DICD3 (Q47162 ), FIU_ECO57 (Q8X7W7 ), FIU_ECOL6 (Q8CW90 ), FIU_ECOLI (P75780 ), FIU_ECOUT (Q1REC0 ), FOXA_SALTS (E1W8M5 ), FOXA_SALTY (P0CL48 ), FYUA_YERE8 (A1JTG3 ), FYUA_YEREN (P0C2M9 ), FYUA_YERPE (P46359 ), HEMR_YEREN (P31499 ), HGBA_HAEDU (Q47952 ), HMUR_YERPE (Q56989 ), PLH26_FORAG (T2KM18 ), PLH39_FORAG (T2KMI3 ), PLH3_FORAG (T2KPJ3 ), RHTA_RHIME (Q9Z3Q5 ), SUSC_BACTN (Q8A1G1 ), TDHA_HAEDU (Q7VNU1 ), Y146A_HAEIN (O86241 ), Y964_NEIMB (Q9JZN9 ), YNCD_ECOLI (P76115 )» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
SLAP1_THET8 (Q5SH37 ) |
PDB [Detailed view] |
63 PDB
1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 2GUF; 2HDF; 2HDI; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X; 4CU4; 5M9B; 5MZS; 5NC3; 5NC4; 5NR2; 5ODW; 5OUT; 6E4V; 6I2J; 6Q5E; 6R1F; 6Y47; 6YY5; 6Z2N; 6Z33; 7NSU; 7OBW; 8A60; 8A8C » more |