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PROSITE entry PS01156


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General information about the entry

Entry name [info] TONB_DEPENDENT_REC_2
Accession [info] PS01156
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE;
03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00354
Associated ProRule [info] PRU10144

Name and characterization of the entry

Description [info] TonB-dependent receptor (TBDR) proteins signature 2.
Pattern [info] 
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]-
[LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.


Total number of hits 78 in 78 different sequences
Number of true positive hits 77 in 77 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 36
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.72 %
Recall (true positives / (true positives + false negatives)) 68.14 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 77 sequences 

BTUB_CITFR  (O52903    ), BTUB_CROS8  (A7ML93    ), BTUB_ECO24  (A7ZUI6    ), 

BTUB_ECO57  (Q8X714    ), BTUB_ECOHS  (A8A774    ), BTUB_ECOK1  (A1AIE8    ), 
BTUB_ECOL5  (Q0TA90    ), BTUB_ECOL6  (Q8CVJ0    ), BTUB_ECOLI  (P06129    ), 
BTUB_ECOLX  (Q93SE0    ), BTUB_ECOUT  (Q1R3U1    ), BTUB_ENT38  (A4WG45    ), 
BTUB_PECAS  (Q6CZB5    ), BTUB_SALCH  (Q57H87    ), BTUB_SALPA  (Q5PK67    ), 
BTUB_SALTI  (Q8Z314    ), BTUB_SALTY  (P37409    ), BTUB_SHIDS  (Q32AE6    ), 
BTUB_SHIF8  (Q0SY25    ), BTUB_SHIFL  (Q83IS4    ), BTUB_SHISS  (Q3YV10    ), 
BTUB_VIBC3  (A5F4P6    ), BTUB_VIBCH  (Q9KVI9    ), BTUB_VIBCM  (C3LPZ6    ), 
BTUB_VIBPA  (Q87KN9    ), BTUB_VIBVU  (Q8DD41    ), BTUB_YERP3  (A7FD14    ), 
BTUB_YERPA  (Q1CBU1    ), BTUB_YERPE  (Q8ZAA1    ), BTUB_YERPN  (Q1CNP0    ), 
BTUB_YERPP  (A4TRG0    ), BTUB_YERPS  (Q66G57    ), CIRA_ECOLI  (P17315    ), 
FATA_VIBA7  (P11461    ), FCUA_YEREN  (Q05202    ), FECA_ECOLI  (P13036    ), 
FEPA_ECOLI  (P05825    ), FHUA_ECOLI  (P06971    ), FHUE_ECOLI  (P16869    ), 
FOXA_YEREN  (Q01674    ), FPTA_PSEAE  (P42512    ), FPVA_PSEAE  (P48632    ), 
HGBA_HAEIF  (Q9KIV2    ), HGBB_HAEIF  (Q9KIV1    ), HGBC_HAEIF  (Q9KIV0    ), 
HGP1_HAEIN  (P44795    ), HGP2_HAEIN  (P44809    ), HGP3_HAEIN  (P44836    ), 
HGP4_HAEIN  (Q57408    ), HGPA_HAEIF  (Q9ZA21    ), HGPB_HAEIF  (O87296    ), 
HGPC_HAEIF  (Q9X442    ), HHUA_HAEIF  (Q48153    ), HPUB_NEIMA  (Q9JWA2    ), 
HPUB_NEIMC  (P96949    ), HXUC1_HAEIN (P44600    ), HXUC2_HAEIF (P45357    ), 
HXUC_HAEI8  (Q4QNS6    ), IRGA_VIBC3  (A5F9G0    ), IRGA_VIBCH  (P0C6R0    ), 
IUTA_ECOLX  (P14542    ), IUTA_KLEPN  (Q6U607    ), LBPA_NEIMA  (Q9JTK4    ), 
LBPA_NEIMB  (Q06379    ), PBUA_PSEU4  (Q08017    ), PFEA_PSEAE  (Q05098    ), 
PUPA_PSEPU  (P25184    ), PUPB_PSEPU  (P38047    ), TBPA1_NEIMI (Q09056    ), 
TBPA2_NEIMI (Q06987    ), TBPA_HAEIN  (P44970    ), TBPA_NEIGO  (Q01996    ), 
TBPA_NEIMB  (Q9K0U9    ), TDHA_HAEI8  (Q4QP67    ), TDHA_HAEIN  (P44523    ), 
Y1217_HAEIN (P45114    ), Y1497_NEIMB (Q7DDB6    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 36 sequences 

BFRD_BORPE  (P81549    ), BHUA_BRUA2  (Q2YJB2    ), BHUA_BRUAB  (Q576D7    ), 

BHUA_BRUME  (Q8YDS0    ), BHUA_BRUO2  (A5VW32    ), BTUB_PHOLL  (Q7MYE3    ), 
BTUB_PHOPR  (Q6LLU3    ), BTUB_VIBC1  (A7MXY8    ), BTUB_VIBVY  (Q7MQ42    ), 
CEAB_ECOLX  (P05819    ), CEAD_ECOLX  (P17998    ), CEAM_ECOLX  (P05820    ), 
CNTO_PSEAB  (A0A0H2ZI93), CNTO_PSEAE  (Q9HUX3    ), FCT_DICD3   (Q47162    ), 
FIU_ECO57   (Q8X7W7    ), FIU_ECOL6   (Q8CW90    ), FIU_ECOLI   (P75780    ), 
FIU_ECOUT   (Q1REC0    ), FOXA_SALTS  (E1W8M5    ), FOXA_SALTY  (P0CL48    ), 
FYUA_YERE8  (A1JTG3    ), FYUA_YEREN  (P0C2M9    ), FYUA_YERPE  (P46359    ), 
HEMR_YEREN  (P31499    ), HGBA_HAEDU  (Q47952    ), HMUR_YERPE  (Q56989    ), 
PLH26_FORAG (T2KM18    ), PLH39_FORAG (T2KMI3    ), PLH3_FORAG  (T2KPJ3    ), 
RHTA_RHIME  (Q9Z3Q5    ), SUSC_BACTN  (Q8A1G1    ), TDHA_HAEDU  (Q7VNU1    ), 
Y146A_HAEIN (O86241    ), Y964_NEIMB  (Q9JZN9    ), YNCD_ECOLI  (P76115    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

SLAP1_THET8 (Q5SH37    )


				
	

	

		PDB
[Detailed view]		
		
			63 PDB
			


			1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 
			
				1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 
				2GUF; 2HDF; 2HDI; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 
				2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X; 4CU4; 5M9B; 5MZS; 5NC3; 5NC4; 
				5NR2; 5ODW; 5OUT; 6E4V; 6I2J; 6Q5E; 6R1F; 6Y47; 6YY5; 6Z2N; 6Z33; 7NSU; 
				7OBW; 8A60; 8A8C
			
			

			» more