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Entry: PS01178

General information about the entry

Entry name [info] ANAPHYLATOXIN_2
Accession [info] PS01178
Entry type [info] MATRIX
Date [info] 01-NOV-1997 CREATED;
10-MAY-2017 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00906
Associated ProRule [info] PRU00022

Name and characterization of the entry

Description [info] Anaphylatoxin domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=34;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=34;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.7140000; R2=0.0113000; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=551.3717041; R2=3.3716815; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=628; H_SCORE=2669; N_SCORE=7.8; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=513; H_SCORE=2281; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105;
...
                A   B   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y   Z
/I:         B1=0; BI=-105; BD=-105;
/M: SY='C';  M=-10,-12, 64,-18,-18,-20,-23,  6,-29,-22,-21,-15, -8,-31,-16,-20, -3, -8,-15,-44,-16,-18;
/M: SY='C';  M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='A';  M= 11,-11,-19,-15, -2,-13,-12, -9, -6, -7, -4,  2,-12,-15, -2,-10, -3, -4, -3,-19, -7, -3;
/M: SY='D';  M=  0, 16,-20, 20,  2,-23,-13, -9,-20, -8,-13,-15,  4,-12, -6,-13,  4,  7,-12,-31,-15, -2;
/M: SY='G';  M=  1,-11,-29,-11,-19,-29, 62,-20,-37,-19,-29,-19, -2,-16,-19,-20,  0,-19,-27,-21,-29,-19;
/M: SY='I';  M= -2,-19,-22,-25,-18, -7,-25,-13, 18,-14,  9, 17,-15,-20, -8,-13,-12, -7, 14,-23, -5,-15;
/M: SY='R';  M= -6, -3,-20, -8, -3,-17,-16, -1,-14,  1,-11, -4,  4,-18,  6, 10,  0, -1,-13,-26, -9,  0;
/M: SY='L';  M= -7,-12,-25,-11, -5,-12, -9,-13, -9, -9,  1,  1,-12,-20, -7, -7,-12,-11, -8,-13, -9, -6;
/M: SY='A';  M= 22,  0,-15,-10, -8,-17, -5,-11, -9, -8,-10, -9,  5,-15, -6,-11,  6, -1, -7,-26,-17, -7;
/I:         I=-6; MI=-32; MD=-32; IM=-32;
/M: SY='P';  M= -1, -3,-23, -5, -3,-19,-12,-12,-12, -1,-18,-11,  3, 12, -5, -7,  2,  0,-14,-27,-17, -5; D=-6;
/I:         I=-6; MI=-32; IM=-32; DM=-32;
/M: SY='E';  M=-11,  3,-26,  6, 23,-20,-19,  2,-15,  2, -8,  3, -3,-10, 12, -1, -6, -8,-17,-27,-11, 17;
/M: SY='G';  M= -8, -2,-30,  0, -2,-28, 11, -3,-27, -3,-25,-13,  2, -1,  3, -3, -3,-13,-27,-23,-17, -1;
/M: SY='E';  M=-15,  7,-29, 14, 23,-18,-20,  3,-24,  5,-16,-13,  0,-12, 12,  4, -6,-10,-24,-21, -3, 16;
/M: SY='T';  M= -2,  1,-18,  0, -1,-20, -1,-13,-23, -5,-21,-16,  4,-12, -4, -1, 15, 17,-14,-30,-17, -3;
/M: SY='C';  M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='E';  M=  8,  0,-23,  2, 18,-27, -1, -8,-23, -2,-17,-14, -2, -9,  8, -8,  4, -7,-20,-26,-19, 13;
/M: SY='E';  M=  1, -4,-21, -5,  8,-20,-15, -8,-18,  2,-15,-10, -3, -8,  6,  4,  6,  4,-14,-25,-12,  6;
/M: SY='R';  M=-13,-12,-30,-10,  3,-17,-22, -9,-13,  4, -9, -7, -7,  3,  0, 17,-10, -9,-14,-25,-14, -2;
/M: SY='H';  M=  2, -3,-23, -2, -5,-17,-15, 15,-15,-10,-12, -8, -4, -6, -5,-12, -3, -6,-12,-24, -2, -7;
/I:         I=-4; MI=-22; MD=-22; IM=-22;
/M: SY='A';  M=  5, -2,-14, -5,  2,-15, -8, -6,-12,  4,-13, -5,  0, -9,  3,  3,  5,  2, -8,-19,-11,  2; D=-4;
/I:         I=-4; MI=-22; MD=-22; IM=-22; DM=-22;
/M: SY='Y';  M=-10,-10,-18,-12, -9,  5,-17,  3, -5, -3, -3, -2, -6,-17, -5,  5, -7, -3, -5, -5, 16, -9; D=-4;
/I:         I=-4; MI=-22; MD=-22; IM=-22; DM=-22;
/M: SY='I';  M= -4, -6,-15,-10, -9, -7,-10,-11,  9,-11, -1,  1, -1,-13, -9,-11, -5, -4,  7,-18, -8,-10; D=-4;
/I:         I=-4; MI=0; IM=0; DM=-22;
/M: SY='G';  M=  1,  2,-23,  0, -7,-27, 30,-11,-30,-12,-29,-19, 11,-13, -6,-12, 12, -5,-24,-29,-24, -7;
/M: SY='D';  M=-12, 16,-28, 24, 13,-26,-14, -3,-27,  4,-25,-19,  7,  0,  2, -4,  1, -6,-24,-28,-10,  6;
/M: SY='S';  M=  1, -1,-20, -4,  2,-17,-11, -8,-11, -7, -9, -8,  2,-12, -1, -8,  3, -1,-10,-29,-15,  0;
/M: SY='C';  M= -3,-15, 84,-22,-16,-21,-25,-25,-28,-22,-19,-19,-16,-31,-21,-25, -6, -9,-11,-44,-27,-18;
/I:         I=-5; MI=0; IM=0;
/M: SY='V';  M= -1,-13,-21,-18,-13,-13,-17,-17,  0, -4, -6, -2, -8,-18, -8,  2, -4,  1,  4,-24,-11,-12;
/M: SY='T';  M= -5, -4,-22, -6,  2,-17,-20, -8, -7, -1,-10, -2, -3,-12,  2, -3,  2,  4, -6,-27,-10,  0;
/M: SY='F';  M=  9,-22,-16,-27,-19, 13,-19,-22,  3,-20,  6,  0,-19,-15,-23,-20, -8, -3,  9,-15, -3,-20;
/M: SY='F';  M=-15,-24,-23,-30,-22, 34,-30,-12,  8,-20,  6,  6,-19,-26,-17,-16,-16, -9,  5, -1, 22,-19;
/M: SY='K';  M=-11,-10,-26,-10,  1,-15,-23,-11,-12, 17, -3,  0, -9,-17,  0, 15,-14, -9, -9,-21, -8,  0;
/M: SY='Q';  M= -8,  3,-26,  6, 13,-28,-15,  3,-25,  9,-21,-11,  4,-12, 20, 17,  3, -5,-22,-27,-13, 15;
/M: SY='C';  M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/M: SY='C';  M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30;
/I:         E1=0; IE=-105; DE=-105;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 41 in 32 different sequences
Number of true positive hits 41 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.62 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 3
Feature key [info] DOMAIN
Feature description [info] Anaphylatoxin-like
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

CO3_BOVIN   (Q2UVX4    ), CO3_CAVPO   (P12387    ), CO3_EPTBU   (P98094    ), 
CO3_HUMAN   (P01024    ), CO3_LETCA   (Q00685    ), CO3_MOUSE   (P01027    ), 
CO3_NAJNA   (Q01833    ), CO3_ONCMY   (P98093    ), CO3_PIG     (P01025    ), 
CO3_RAT     (P01026    ), CO4A_HUMAN  (P0C0L4    ), CO4B_HUMAN  (P0C0L5    ), 
CO4B_MOUSE  (P01029    ), CO4_BOVIN   (P01030    ), CO4_RAT     (P08649    ), 
CO5_BOVIN   (P12082    ), CO5_HUMAN   (P01031    ), CO5_MOUSE   (P06684    ), 
CO5_PIG     (P01032    ), CO5_RAT     (P08650    ), FBLN1_CHICK (O73775    ), 
FBLN1_CHLAE (Q8MJJ9    ), FBLN1_DANRE (O42182    ), FBLN1_HUMAN (P23142    ), 
FBLN1_MOUSE (Q08879    ), FBLN2_HUMAN (P98095    ), FBLN2_MOUSE (P37889    ), 
VCO31_AUSSU (Q0ZZJ6    ), VCO32_AUSSU (A0RZC6    ), VCO3_CROAD  (J3S836    ), 
VCO3_NAJKA  (Q91132    ), VCO3_OPHHA  (I2C090    )
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

FBLN1_CAEEL (O77469    )

		
UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

CO3_RABIT   (P12247    ), CO3_XENLA   (P23667    ), CO4_CAVPO   (P19069    )

		
PDB
[Detailed view]
31 PDB

1C5A; 1CFA; 1KJS; 2A73; 2B39; 3CU7; 3HQA; 3HQB; 3KLS; 3KM9; 3PRX; 3PVM; 4FXG; 4FXK; 4HW5; 4HWJ; 4I6O; 4P39; 4P3A; 4P3B; 4UU9; 4WB2; 4WB3; 5B4P; 5HCC; 5HCD; 5HCE; 5I5K; 5JPM; 5JPN; 6I2X
» more

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