PROSITE entry PS01204

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General information about the entry

Entry name [info]	REL_1
Accession [info]	PS01204
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-DEC-2001 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00924

Name and characterization of the entry

Description [info]	NF-kappa-B/Rel/dorsal domain signature.
Pattern [info]	F-R-Y-x-C-E-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	24 in 24 different sequences
Number of true positive hits	24 in 24 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	13
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	64.86 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

24 sequences

DIF_DROME   (P98149), DORS_DROME  (P15330), NFKB1_CANLF (Q6F3J0),

NFKB1_CHICK (Q04861), NFKB1_HUMAN (P19838), NFKB1_MOUSE (P25799), 
NFKB1_RAT   (Q63369), NFKB2_CHICK (P98150), NFKB2_HUMAN (Q00653), 
NFKB2_MOUSE (Q9WTK5), NFKB2_XENLA (O73630), RELB_CHICK  (P51509), 
RELB_HUMAN  (Q01201), RELB_MOUSE  (Q04863), RELB_XENLA  (P51510), 
REL_AVIRE   (P01126), REL_CHICK   (P16236), REL_HUMAN   (Q04864), 
REL_MELGA   (P01125), REL_MOUSE   (P15307), TF65_CHICK  (P98152), 
TF65_HUMAN  (Q04206), TF65_MOUSE  (Q04207), TF65_XENLA  (Q04865)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

13 sequences

NFAC1_BOVIN (P98201), NFAC1_HUMAN (O95644), NFAC1_MOUSE (O88942),

NFAC1_PIG   (O77638), NFAC2_HUMAN (Q13469), NFAC2_MOUSE (Q60591), 
NFAC3_HUMAN (Q12968), NFAC3_MOUSE (P97305), NFAC4_HUMAN (Q14934), 
NFAC4_MOUSE (Q8K120), NFAT5_HUMAN (O94916), NFAT5_MOUSE (Q9WV30), 
NFKB1_DROME (Q94527)

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PDB
[Detailed view]

27 PDB

1A3Q; 1GJI; 1IKN; 1LE5; 1LE9; 1LEI; 1MDI; 1MDJ; 1MDK; 1NFI; 1NFK; 1OOA; 1RAM; 1VKX; 2I9T; 2O61; 2RAM; 2V2T; 3DO7; 3GUT; 5U01; 5ZMC; 6GGR; 7CLI; 7VUP; 7VUQ; 7W7L
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