PROSITE entry PS01204

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PURL: https://purl.expasy.org/prosite/signature/PS01204

Direct ScanProsite submission

General information about the entry

Entry name [info]	REL_1
Accession [info]	PS01204
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00924

Name and characterization of the entry

Description [info]	NF-kappa-B/Rel/dorsal domain signature.
Pattern [info]	F-R-Y-x-C-E-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	25 in 25 different sequences
Number of true positive hits	25 in 25 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	13
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	65.79 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

25 sequences

DIF_DROME   (P98149), DORS_DROME  (P15330), NFKB1_CANLF (Q6F3J0),

NFKB1_CHICK (Q04861), NFKB1_HUMAN (P19838), NFKB1_MOUSE (P25799), 
NFKB1_RAT   (Q63369), NFKB2_CHICK (P98150), NFKB2_HUMAN (Q00653), 
NFKB2_MOUSE (Q9WTK5), NFKB2_XENLA (O73630), RELB_CHICK  (P51509), 
RELB_HUMAN  (Q01201), RELB_MOUSE  (Q04863), RELB_XENLA  (P51510), 
REL_AVIRE   (P01126), REL_CHICK   (P16236), REL_HUMAN   (Q04864), 
REL_MELGA   (P01125), REL_MOUSE   (P15307), TF65_CHICK  (P98152), 
TF65_HUMAN  (Q04206), TF65_MOUSE  (Q04207), TF65_RAT(Q7TQN4), 
TF65_XENLA  (Q04865)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

13 sequences

NFAC1_BOVIN (P98201), NFAC1_HUMAN (O95644), NFAC1_MOUSE (O88942),

NFAC1_PIG   (O77638), NFAC2_HUMAN (Q13469), NFAC2_MOUSE (Q60591), 
NFAC3_HUMAN (Q12968), NFAC3_MOUSE (P97305), NFAC4_HUMAN (Q14934), 
NFAC4_MOUSE (Q8K120), NFAT5_HUMAN (O94916), NFAT5_MOUSE (Q9WV30), 
NFKB1_DROME (Q94527)

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PDB
[Detailed view]

35 PDB

pdb_00001a3q; pdb_00001gji; pdb_00001ikn; pdb_00001le5; pdb_00001le9; pdb_00001lei; pdb_00001mdi; pdb_00001mdj; pdb_00001mdk; pdb_00001nfi; pdb_00001nfk; pdb_00001ooa; pdb_00001ram; pdb_00001vkx; pdb_00002i9t; pdb_00002o61; pdb_00002ram; pdb_00002v2t; pdb_00003do7; pdb_00003gut; pdb_00005u01; pdb_00005zmc; pdb_00006ggr; pdb_00007cli; pdb_00007vup; pdb_00007vuq; pdb_00007w7l; pdb_00008tkl; pdb_00008tkm; pdb_00008tkn; pdb_00008tqd; pdb_00009bdu; pdb_00009bdv; pdb_00009bdw; pdb_00009bdx
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