We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS01208
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PURL: https://purl.expasy.org/prosite/signature/PS01208
Direct ScanProsite submission
General information about the entry
| Entry name [info] | VWFC_1 |
| Accession [info] | PS01208 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00928 |
Name and characterization of the entry
| Description [info] | VWFC domain signature. |
| Pattern [info] |
C-x(2,3)-C-{CG}-C-x(6,14)-C-x(3,4)-C-x(2,10)-C-x(9,16)-C-C-x(2,4)-C.
|
Numerical results [info]
| Total number of hits | 285 in 145 different sequences |
| Number of true positive hits | 249 in 120 different sequences |
| Number of 'unknown' hits | 1 |
| Number of false positive hits | 35 in 24 different sequences |
| Number of false negative sequences | 20 |
| Number of 'partial' sequences | 4 |
| Precision (true positives / (true positives + false positives)) | 87.68 % |
| Recall (true positives / (true positives + false negatives)) | 92.57 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 20 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
120 sequences
BMPER_HUMAN (Q8N8U9), BMPER_MOUSE (Q8CJ69), CCN1_CHICK (P19336), CCN1_HUMAN (O00622), CCN1_MOUSE (P18406), CCN1_PANTR (A5A6L1), CCN1_RAT(Q9ES72), CCN2_BOVIN (O18739), CCN2_HUMAN (P29279), CCN2_MOUSE (P29268), CCN2_PIG(O19113), CCN2_RAT(Q9R1E9), CCN3_CHICK (P28686), CCN3_COTJA (P42642), CCN3_HUMAN (P48745), CCN3_MOUSE (Q64299), CCN3_RAT(Q9QZQ5), CCN3_XENLA (P51609), CCN4_HUMAN (O95388), CCN4_MOUSE (O54775), CCN4_RAT(Q99PP0), CCN5_HUMAN (O76076), CCN5_MOUSE (Q9Z0G4), CCN5_RAT(Q9JHC6), CHRD_DANRE (O57472), CHRD_HUMAN (Q9H2X0), CHRD_MOUSE (Q9Z0E2), CHRD_RAT(Q63148), CHRD_XENLA (Q91713), CO1A1_BOVIN (P02453), CO1A1_CANLF (Q9XSJ7), CO1A1_CHICK (P02457), CO1A1_CYNPY (Q9YIB4), CO1A1_HUMAN (P02452), CO1A1_MOUSE (P11087), CO1A1_RAT (P02454), CO2A1_BOVIN (P02459), CO2A1_HUMAN (P02458), CO2A1_MOUSE (P28481), CO2A1_XENLA (Q91717), CO2A1_XENTR (Q6P4Z2), CO3A1_CHICK (P12105), CO3A1_HUMAN (P02461), CO3A1_MOUSE (P08121), CO3A1_RAT (P13941), CO5A2_HUMAN (P05997), CO5A2_MOUSE (Q3U962), CRDL1_CHICK (Q90ZD5), CRDL1_HUMAN (Q9BU40), CRDL1_MOUSE (Q920C1), CRDL1_RAT (Q76LD0), CRDL2_HUMAN (Q6WN34), CRDL2_MOUSE (Q8VEA6), CRIM1_CHICK (Q8AWW5), CRIM1_DANRE (Q7T3Q2), CRIM1_HUMAN (Q9NZV1), CRIM1_MOUSE (Q9JLL0), ECM2_BOVIN (Q3MHH9), ECM2_HUMAN (O94769), ECM2_MOUSE (Q5FW85), FRAS1_HUMAN (Q86XX4), FRAS1_MOUSE (Q80T14), IDD_HUMAN (P98153), IDD_MOUSE (P98154), KCP_HUMAN (Q6ZWJ8), KCP_MOUSE (Q3U492), KCP_XENLA (Q9IBG7), MUC19_BOVIN (P98091), MUC19_MOUSE (Q6PZE0), MUC2L_RAT (P98089), MUC2_HUMAN (Q02817), MUC2_MOUSE (Q80Z19), MUC5A_HUMAN (P98088), MUC5B_CHICK (Q98UI9), MUC5B_HUMAN (Q9HC84), MUCAP_PIG (P12021), MUCB1_XENLA (P38565), NELL1_HUMAN (Q92832), NELL1_MOUSE (Q2VWQ2), NELL1_RAT (Q62919), NELL2_BOVIN (A6QR11), NELL2_DANRE (A1A5Y0), NELL2_HUMAN (Q99435), NELL2_MOUSE (Q61220), NELL2_PONAB (Q5R3Z7), NELL2_RAT (Q62918), NELL2_XENLA (Q7ZXL5), NELL2_XENTR (A2VCU8), NEL_CHICK (Q90827), PXDNL_HUMAN (A1KZ92), PXDN_DROME (Q9VZZ4), PXDN_HUMAN (Q92626), PXDN_MOUSE (Q3UQ28), PXDN_XENTR (A4IGL7), SAS_DROME (Q04164), SOG_DROME (Q24025), SSPO_BOVIN (P98167), SSPO_CHICK (Q2PC93), SSPO_HUMAN (A2VEC9), SSPO_MOUSE (Q8CG65), SSPO_RAT(Q700K0), TSP1_BOVIN (Q28178), TSP1_HUMAN (P07996), TSP1_MOUSE (P35441), TSP1_XENLA (P35448), TSP2_BOVIN (Q95116), TSP2_CHICK (P35440), TSP2_HUMAN (P35442), TSP2_MOUSE (Q03350), VWC2L_DANRE (B0UZC8), VWC2L_HUMAN (B2RUY7), VWC2L_MOUSE (Q505H4), VWC2_HUMAN (Q2TAL6), VWC2_MOUSE (Q8C8N3), VWCE_HUMAN (Q96DN2), VWCE_MOUSE (Q3U515), VWF_CANLF (Q28295), VWF_HUMAN (P04275), VWF_MOUSE (Q8CIZ8), VWF_PIG (Q28833)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
20 sequences
AMNLS_CANLF (Q6UKI2), AMNLS_HUMAN (Q9BXJ7), AMNLS_MOUSE (Q99JB7), AMNLS_PIG (F1SAM7), FSTL1_BOVIN (Q58D84), FSTL1_HUMAN (Q12841), FSTL1_MACFA (Q9GKY0), FSTL1_MOUSE (Q62356), FSTL1_PONAB (Q5R9Y1), FSTL1_RAT (Q62632), HMCT_BOMMO (P98092), JAG1B_DANRE (Q90Y54), JAG2_HUMAN (Q9Y219), MUC19_HUMAN (Q7Z5P9), MUC2_RAT(Q62635), VWC2L_MACFA (Q95K75), ZAN_HUMAN (Q9Y493), ZAN_MOUSE (O88799), ZAN_PIG (Q28983), ZAN_RABIT (P57999)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
CO1A1_RABIT (P02456), CO2A1_CHICK (P02460), CO3A1_BOVIN (P04258), VWF_BOVIN (P80012)» more |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
SCGR7_HUMAN (A0A286YF01) |
| UniProtKB/Swiss-Prot False positive sequences |
24 sequences
DEP1_ORYSJ (Q67UU9), GG3_ARATH (Q6AWT8), KR510_HUMAN (Q6L8G5), KRA51_HUMAN (Q6L8H4), KRA51_MOUSE (Q64507), KRA53_HUMAN (Q6L8H2), KRA54_HUMAN (Q6L8H1), KRA56_HUMAN (Q6L8G9), KRA57_HUMAN (Q6L8G8), KRA58_HUMAN (O75690), KRA59_HUMAN (P26371), KRUC_SHEEP (P26372), MCSP_MOUSE (P15265), MCSP_RAT(Q64298), MTCU_CALSI (Q9U620), MT_CARMA(P55948), SCGR1_HUMAN (A0A286YEY9), SCGR2_HUMAN (A0A286YFB4), SCGR3_HUMAN (A0A286YF60), SCGR4_HUMAN (A0A286YEV6), SCGR5_HUMAN (A0A286YF46), SCGR6_HUMAN (A0A286YF77), SCGR8_HUMAN (A0A286YFG1), SCGR9_HUMAN (P0DSO2)» more |
| PDB [Detailed view] |
5 PDB
pdb_00001u5m; pdb_00005nb8; pdb_00005nir; pdb_00007qcl; pdb_00007qcu |