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| Entry: PS01209 |
General information about the entry
| Entry name [info] | LDLRA_1 |
| Accession [info] | PS01209 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00929 |
Name and characterization of the entry
| Description [info] | LDL-receptor class A (LDLRA) domain signature. |
| Pattern [info] |
C-[VILMA]-x(5,6)-C-[DNH]-x(3)-[DENQHT]-C-x(3,4)-[STADEW]-[DEH]-[DE]- x(1,5)-C. |
Numerical results [info]
| Total number of hits | 812 in 162 different sequences |
| Number of true positive hits | 812 in 162 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 15 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 98.19 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 31 |
| Site [info] | disulfide at position 1 |
| Site [info] | disulfide at position 4 |
| Site [info] | disulfide at position 8 |
| Site [info] | disulfide at position 14 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
162 sequences
AEGP_HUMAN (Q6UXC1 ), AEGP_MOUSE (A2AJA7 ), AEGP_RAT (Q63191 ), CD320_BOVIN (A6QNY1 ), CD320_HUMAN (Q9NPF0 ), CD320_MOUSE (Q9Z1P5 ), CD320_RAT (Q5HZW5 ), CDA1_BOMMO (H9J9M0 ), CFAI_HUMAN (P05156 ), CFAI_MOUSE (Q61129 ), CFAI_PONAB (Q5R5A4 ), CFAI_RAT (Q9WUW3 ), CO6_BOVIN (Q29RU4 ), CO6_HUMAN (P13671 ), CO6_PANTR (P61134 ), CO6_PONPY (P61135 ), CO6_RAT (Q811M5 ), CO7_BOVIN (Q29RQ1 ), CO7_HUMAN (P10643 ), CO7_PIG (Q9TUQ3 ), CO7_PONAB (Q5RAD0 ), CO8A_HUMAN (P07357 ), CO8A_MOUSE (Q8K182 ), CO8A_RABIT (P98136 ), CO8B_HUMAN (P07358 ), CO8B_MOUSE (Q8BH35 ), CO8B_PAROL (Q9PVW7 ), CO8B_RABIT (P98137 ), CO8B_RAT (P55314 ), CO9_BOVIN (Q3MHN2 ), CO9_HORSE (P48770 ), CO9_HUMAN (P02748 ), CO9_MOUSE (P06683 ), CO9_ONCMY (P06682 ), CO9_RABIT (P48747 ), CO9_RAT (Q62930 ), CO9_TAKRU (P79755 ), CORIN_HUMAN (Q9Y5Q5 ), CORIN_MOUSE (Q9Z319 ), CORIN_RAT (Q80YN4 ), CPROH_CONVC (A0A0F7YYX3), CTX_SEPES (B2DCR8 ), EGG1_CAEBR (A8X765 ), EGG1_CAEEL (Q09967 ), EGG1_CAERE (E3LYX0 ), EGG2_CAEEL (Q21629 ), ENTK_BOVIN (P98072 ), ENTK_HUMAN (P98073 ), ENTK_MOUSE (P97435 ), ENTK_PIG (P98074 ), GLBL_LAMSP (P16222 ), GLBL_TYLHE (P18207 ), GLBM_TYLHE (P18208 ), GR101_LYMST (P46023 ), IDD_HUMAN (P98153 ), IDD_MOUSE (P98154 ), LDLR1_XENLA (Q99087 ), LDLR2_XENLA (Q99088 ), LDLR_BOVIN (P01131 ), LDLR_CRIGR (P35950 ), LDLR_HUMAN (P01130 ), LDLR_MOUSE (P35951 ), LDLR_PIG (Q28832 ), LDLR_RABIT (P20063 ), LDLR_RAT (P35952 ), LRAD1_HUMAN (Q5T700 ), LRAD3_HUMAN (Q86YD5 ), LRAD3_MOUSE (A2AR95 ), LRAD3_XENTR (A4IHY6 ), LRAD4_HUMAN (O15165 ), LRAD4_MOUSE (Q8BWJ4 ), LRP10_HUMAN (Q7Z4F1 ), LRP10_MOUSE (Q7TQH7 ), LRP11_HUMAN (Q86VZ4 ), LRP11_MOUSE (Q8CB67 ), LRP12_HUMAN (Q9Y561 ), LRP12_MACFA (Q9BE74 ), LRP12_MOUSE (Q8BUJ9 ), LRP12_PONAB (Q5R662 ), LRP1B_HUMAN (Q9NZR2 ), LRP1B_MOUSE (Q9JI18 ), LRP1_CHICK (P98157 ), LRP1_HUMAN (Q07954 ), LRP1_MOUSE (Q91ZX7 ), LRP1_RAT (G3V928 ), LRP2_HUMAN (P98164 ), LRP2_MOUSE (A2ARV4 ), LRP2_PIG (C0HL13 ), LRP2_RAT (P98158 ), LRP3_HUMAN (O75074 ), LRP3_RAT (O88204 ), LRP4_HUMAN (O75096 ), LRP4_MOUSE (Q8VI56 ), LRP4_RAT (Q9QYP1 ), LRP5_HUMAN (O75197 ), LRP5_MOUSE (Q91VN0 ), LRP6_HUMAN (O75581 ), LRP6_MOUSE (O88572 ), LRP8_CHICK (Q98931 ), LRP8_HUMAN (Q14114 ), LRP8_MOUSE (Q924X6 ), LRP_CAEEL (Q04833 ), MALR1_HUMAN (Q5VYJ5 ), MALR1_MOUSE (A2AJX4 ), MFRP_HUMAN (Q9BY79 ), MFRP_MOUSE (Q8K480 ), MLRP1_ACRMI (B3EWZ5 ), MLRP2_ACRMI (B3EWZ6 ), MODSP_DROME (Q9VER6 ), NETO1_HUMAN (Q8TDF5 ), NETO1_MOUSE (Q8R4I7 ), NETO2_HUMAN (Q8NC67 ), NETO2_MOUSE (Q8BNJ6 ), NETO2_RAT (C6K2K4 ), NUDEL_DROME (P98159 ), PGBM_HUMAN (P98160 ), PGBM_MOUSE (Q05793 ), PROH4_APIME (P85831 ), PROH4_CAMFO (E2AX35 ), RXFP1_HUMAN (Q9HBX9 ), RXFP1_MOUSE (Q6R6I7 ), RXFP1_PONAB (Q5R5V8 ), RXFP1_RAT (Q6R6I6 ), RXFP2_CANLF (Q5XM32 ), RXFP2_HUMAN (Q8WXD0 ), RXFP2_MOUSE (Q91ZZ5 ), SORL_CHICK (Q98930 ), SORL_HUMAN (Q92673 ), SORL_MOUSE (O88307 ), SORL_RABIT (Q95209 ), SORL_RAT (P0DSP1 ), SPIT1_HUMAN (O43278 ), SPIT1_MOUSE (Q9R097 ), SSPO_BOVIN (P98167 ), SSPO_CHICK (Q2PC93 ), SSPO_HUMAN (A2VEC9 ), SSPO_MOUSE (Q8CG65 ), SSPO_RAT (Q700K0 ), ST14_BOVIN (Q0IIH7 ), ST14_HUMAN (Q9Y5Y6 ), ST14_MOUSE (P56677 ), SVH1_CAEEL (Q17800 ), TMPS2_HUMAN (O15393 ), TMPS2_MOUSE (Q9JIQ8 ), TMPS3_HUMAN (P57727 ), TMPS3_MOUSE (Q8K1T0 ), TMPS6_HUMAN (Q8IU80 ), TMPS6_MOUSE (Q9DBI0 ), TMPS7_HUMAN (Q7RTY8 ), TMPS7_MOUSE (Q8BIK6 ), TMPS7_RAT (P86091 ), TMPS9_HUMAN (Q7Z410 ), TMPS9_MOUSE (P69525 ), TMPS9_RAT (P69526 ), UNC52_CAEEL (Q06561 ), VGR_SOLIN (Q6X0I2 ), VLDLR_CHICK (P98165 ), VLDLR_HUMAN (P98155 ), VLDLR_MOUSE (P98156 ), VLDLR_RABIT (P35953 ), VLDLR_RAT (P98166 ), YL_DROME (P98163 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
15 sequences
ALK_HUMAN (Q9UM73 ), ALK_MOUSE (P97793 ), GLU2B_BOVIN (Q28034 ), GLU2B_HUMAN (P14314 ), GLU2B_MOUSE (O08795 ), MIG13_CAEEL (G5EF33 ), PKD1_HUMAN (P98161 ), PKD1_MOUSE (O08852 ), RSVR_COTJA (P98162 ), SCD2_CAEEL (O76411 ), TMPS4_HUMAN (Q9NRS4 ), TMPS4_MOUSE (Q8VCA5 ), TMPSD_HUMAN (Q9BYE2 ), TMPSD_MOUSE (Q5U405 ), YL54_CAEEL (P34434 )» more |
| PDB [Detailed view] |
47 PDB
1AJJ; 1CR8; 1D2J; 1D2L; 1F5Y; 1F8Z; 1J8E; 1LDL; 1LDR; 1N7D; 1V9U; 1XFE; 2FCW; 2FYJ; 2FYL; 2I1P; 2JM4; 2KNX; 2KNY; 2KRI; 2LGP; 2M0P; 2M7P; 2M96; 2XRC; 3A7Q; 3DPR; 3M0C; 3OJY; 3P5C; 3T5O; 4A5W; 4E0S; 4ZRP; 4ZRQ; 5B4X; 5B4Y; 5FMW; 5H7V; 5O32; 5OY9; 5OYL; 6BYV; 6CXO; 6DLW; 6H03; 6H04 » more |
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