PROSITE entry PS01216

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General information about the entry

Entry name [info]	SUCCINYL_COA_LIG_1
Accession [info]	PS01216
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00335

Name and characterization of the entry

Description [info]	ATP-citrate lyase / succinyl-CoA ligases family signature 1.
Pattern [info]	S-[KR]-S-G-[GT]-[LIVM]-[GST]-x-[EQ]-x(8,10)-G-x(4)-[LIVM]-[GA]-[LIVM]-G- G-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	64 in 64 different sequences
Number of true positive hits	64 in 64 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	9
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	87.67 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

64 sequences

ACL1_NEUCR  (Q8X097), ACL1_SCHPO  (Q9P7W3), ACL1_SORMK  (O93988),

ACLB1_ARATH (Q9C522), ACLB1_ORYSJ (Q93VT8), ACLB2_ARATH (Q9FGX1), 
ACLY_BOVIN  (Q32PF2), ACLY_CAEEL  (P53585), ACLY_DICDI  (Q54YA0), 
ACLY_HUMAN  (P53396), ACLY_MOUSE  (Q91V92), ACLY_RAT(P16638), 
ACLY_SHEEP  (Q2TCH3), MTKB_METEA  (P53595), SUCA1_ARATH (P68209), 
SUCA1_SOLLC (Q8GTQ9), SUCA1_TRIVA (P53399), SUCA2_ARATH (Q8LAD2), 
SUCA2_SOLLC (Q6DQL1), SUCA2_TRIVA (P53400), SUCA3_TRIVA (P53401), 
SUCA_BLAHN  (B3FHT4), SUCA_BOVIN  (Q58DR8), SUCA_CAEEL  (P53596), 
SUCA_COLLI  (Q9YGD2), SUCA_DICDI  (P36967), SUCA_DROME  (Q94522), 
SUCA_HUMAN  (P53597), SUCA_MOUSE  (Q9WUM5), SUCA_NEUCR  (Q9P727), 
SUCA_ORYSJ  (Q6ZL94), SUCA_PIG(O19069), SUCA_RAT(P13086), 
SUCA_SCHPO  (O13750), SUCA_YEAST  (P53598), SUCD1_ARCFU (O28733), 
SUCD2_ARCFU (O28098), SUCD_AQUAE  (O67547), SUCD_BACSU  (P80865), 
SUCD_COXBU  (P53591), SUCD_ECO57  (P0AGF1), SUCD_ECOL6  (P0AGF0), 
SUCD_ECOLI  (P0AGE9), SUCD_HAEIN  (P45102), SUCD_METJA  (Q58643), 
SUCD_METTH  (O26663), SUCD_MYCBO  (Q7U0Z0), SUCD_MYCTO  (P9WGC6), 
SUCD_MYCTU  (P9WGC7), SUCD_PSEAE  (Q51567), SUCD_RICBR  (Q1RH56), 
SUCD_RICCN  (Q92I22), SUCD_RICFE  (Q4ULQ8), SUCD_RICPR  (O08371), 
SUCD_RICTY  (Q9AKE1), SUCD_STAAC  (Q5HGI6), SUCD_STAAM  (P66866), 
SUCD_STAAN  (P99070), SUCD_STAAR  (Q6GHI9), SUCD_STAAS  (Q6G9W7), 
SUCD_STAAW  (Q8NX01), SUCD_STAEQ  (Q5HPU4), SUCD_STAES  (Q8CPH4), 
SUCD_THETH  (P09143)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

9 sequences

ACL2_SCHPO  (O13907), ACLA1_ARATH (Q9SGY2), ACLA1_ORYSJ (Q53JY8),

ACLA2_ARATH (O22718), ACLA2_ORYSJ (Q2QZ86), ACLA3_ARATH (O80526), 
ACLA3_ORYSJ (Q2QNG7), SQWL_ACHSX  (A0A3A6N9V6), SUCB_SOLLC  (Q84LB6)

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PDB
[Detailed view]

63 PDB

1CQI; 1CQJ; 1EUC; 1EUD; 1JKJ; 1JLL; 1OI7; 1SCU; 2FP4; 2FPG; 2FPI; 2FPP; 2NU6; 2NU7; 2NU8; 2NU9; 2NUA; 2SCU; 2YV1; 3MWD; 3MWE; 3PFF; 3UFX; 4XX0; 5CAE; 5TDE; 5TDF; 5TDM; 5TDZ; 5TE1; 5TEQ; 5TES; 5TET; 6G4Q; 6HXH; 6O0H; 6POE; 6POF; 6QFB; 6UI9; 6UIA; 6UUW; 6UUZ; 6UV5; 6WCV; 6XRU; 7JFP; 7JJ0; 7JKR; 7JMK; 7LIW; 7LJ9; 7LLA; 7MSR; 7MSS; 7MST; 7RIG; 7RKZ; 7RMP; 8G1E; 8G1F; 8G5C; 8G5D
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