PROSITE entry PS01227

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PURL: https://purl.expasy.org/prosite/signature/PS01227

Direct ScanProsite submission

General information about the entry

Entry name [info]	UPF0012
Accession [info]	PS01227
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00943

Name and characterization of the entry

Description [info]	Uncharacterized protein family UPF0012 signature.
Pattern [info]	[GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2026_03 which contains 575'748 sequence entries.

Total number of hits	28 in 28 different sequences
Number of true positive hits	28 in 28 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	11
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	71.79 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

28 sequences

DAVA_PSEPH  (P55176), DAVA_PSEPK  (Q88QV2), NFT1_CAEEL  (O76463),

NIT1_BOVIN  (Q32LH4), NIT1_DICDI  (Q557J5), NIT1_HUMAN  (Q86X76), 
NIT1_MOUSE  (Q8VDK1), NIT1_RAT(Q7TQ94), NIT1_SYNY3  (P55175), 
NIT1_SYNYG  (P0DP66), NIT1_YEREN  (P0DP68), NIT2_DICDI  (Q54JM9), 
NIT2_YEAST  (P47016), NIT3_YEAST  (P49954), NIT_PAENI   (Q93NG1), 
Y480_MYCTO  (P9WJ00), Y480_MYCTU  (P9WJ01), YAFV_ECOBD  (A0A140NDS5), 
YAFV_ECOLI  (Q47679), YAFV_STAA4  (P0DP65), YAFV_YEREN  (P0DP67), 
YAG5_STAAU  (P55177), YAG5_STALU  (P55178), YAUB_SCHPO  (Q10166), 
YBEM_ECO57  (P58054), YBEM_ECOBD  (A0A140NCB4), YBEM_ECOLI  (P0DP64), 
YHCX_BACSU  (P54608)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

11 sequences

MTNU_BACSU  (O31664), NIT2A_XENLA (Q6IR61), NIT2B_XENLA (Q6INI7),

NIT2_BOVIN  (Q2T9R6), NIT2_DANRE  (Q4VBV9), NIT2_HUMAN  (Q9NQR4), 
NIT2_MOUSE  (Q9JHW2), NIT2_PONAB  (Q5R4L6), NIT2_RAT(Q497B0), 
NIT2_XENTR  (Q28IE5), RSAM_PSESP  (Q75SP7)

» more

PDB
[Detailed view]

5 PDB

pdb_00001ems; pdb_00001f89; pdb_00004h5u; pdb_00004hg3; pdb_00004hg5