Entry: PS01227

General information about the entry

Entry name [info] UPF0012
Accession [info] PS01227
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED; 01-DEC-2004 DATA UPDATE; 18-JUL-2018 INFO UPDATE.
PROSITE Doc. [info] PDOC00943

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0012 signature.
Pattern [info] 
[GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2018_07 which contains 557'992 sequence entries.


Total number of hits 27 in 27 different sequences
Number of true positive hits 27 in 27 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 71.05 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 27 sequences 

NFT1_CAEEL  (O76463    ), NIT1_BOVIN  (Q32LH4    ), NIT1_DICDI  (Q557J5    ), 

NIT1_HUMAN  (Q86X76    ), NIT1_MOUSE  (Q8VDK1    ), NIT1_RAT    (Q7TQ94    ), 
NIT1_SYNY3  (P55175    ), NIT1_SYNYG  (P0DP66    ), NIT1_YEREN  (P0DP68    ), 
NIT2_DICDI  (Q54JM9    ), NIT2_YEAST  (P47016    ), NIT3_YEAST  (P49954    ), 
NIT_PAENI   (Q93NG1    ), Y480_MYCTO  (P9WJ00    ), Y480_MYCTU  (P9WJ01    ), 
YAFV_ECOBD  (A0A140NDS5), YAFV_ECOLI  (Q47679    ), YAFV_STAA4  (P0DP65    ), 
YAFV_YEREN  (P0DP67    ), YAG5_STAAU  (P55177    ), YAG5_STALU  (P55178    ), 
YAUB_SCHPO  (Q10166    ), YBEM_ECO57  (P58054    ), YBEM_ECOBD  (A0A140NCB4), 
YBEM_ECOLI  (P0DP64    ), YHCX_BACSU  (P54608    ), YPQQ_PSEPH  (P55176    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 11 sequences 

MTNU_BACSU  (O31664    ), NIT2A_XENLA (Q6IR61    ), NIT2B_XENLA (Q6INI7    ), 

NIT2_BOVIN  (Q2T9R6    ), NIT2_DANRE  (Q4VBV9    ), NIT2_HUMAN  (Q9NQR4    ), 
NIT2_MOUSE  (Q9JHW2    ), NIT2_PONAB  (Q5R4L6    ), NIT2_RAT    (Q497B0    ), 
NIT2_XENTR  (Q28IE5    ), RSAM_PSESP  (Q75SP7    )
» more

PDB
[Detailed view]		 4 PDB

1EMS; 1F89; 4HG3; 4HG5

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