PROSITE entry PS01227
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General information about the entry
| Entry name [info] | UPF0012 |
| Accession [info] | PS01227 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00943 |
Name and characterization of the entry
| Description [info] | Uncharacterized protein family UPF0012 signature. |
| Pattern [info] |
[GTAL]-x(2)-[IVT]-C-Y-D-[LIVM]-x-F-P-x(9)-[GD]. |
Numerical results [info]
| Total number of hits | 27 in 27 different sequences |
| Number of true positive hits | 27 in 27 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 71.05 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
27 sequences
NFT1_CAEEL (O76463), NIT1_BOVIN (Q32LH4), NIT1_DICDI (Q557J5), NIT1_HUMAN (Q86X76), NIT1_MOUSE (Q8VDK1), NIT1_RAT(Q7TQ94), NIT1_SYNY3 (P55175), NIT1_SYNYG (P0DP66), NIT1_YEREN (P0DP68), NIT2_DICDI (Q54JM9), NIT2_YEAST (P47016), NIT3_YEAST (P49954), NIT_PAENI (Q93NG1), Y480_MYCTO (P9WJ00), Y480_MYCTU (P9WJ01), YAFV_ECOBD (A0A140NDS5), YAFV_ECOLI (Q47679), YAFV_STAA4 (P0DP65), YAFV_YEREN (P0DP67), YAG5_STAAU (P55177), YAG5_STALU (P55178), YAUB_SCHPO (Q10166), YBEM_ECO57 (P58054), YBEM_ECOBD (A0A140NCB4), YBEM_ECOLI (P0DP64), YHCX_BACSU (P54608), YPQQ_PSEPH (P55176)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
MTNU_BACSU (O31664), NIT2A_XENLA (Q6IR61), NIT2B_XENLA (Q6INI7), NIT2_BOVIN (Q2T9R6), NIT2_DANRE (Q4VBV9), NIT2_HUMAN (Q9NQR4), NIT2_MOUSE (Q9JHW2), NIT2_PONAB (Q5R4L6), NIT2_RAT(Q497B0), NIT2_XENTR (Q28IE5), RSAM_PSESP (Q75SP7)» more |
| PDB [Detailed view] |
5 PDB
1EMS; 1F89; 4H5U; 4HG3; 4HG5 |