PROSITE entry PS01237

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General information about the entry

Entry name [info]	UPF0028
Accession [info]	PS01237
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00951

Name and characterization of the entry

Description [info]	Uncharacterized protein family UPF0028 signature.
Pattern [info]	[GA]-[GS]-G-[GA]-A-R-G-x-[SA]-H-x-G-x(9)-[IVY]-x-[IV]-[DV]-x(2)-[GA]-G-x- S-x-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	41 in 41 different sequences
Number of true positive hits	41 in 41 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	3
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	93.18 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

41 sequences

NTE1_ASPCL  (A1C9L6), NTE1_ASPFU  (Q4WA15), NTE1_CANGA  (Q6FKJ1),

NTE1_COCIM  (Q1DLC7), NTE1_CRYNB  (P0CP37), NTE1_CRYNJ  (P0CP36), 
NTE1_EMENI  (Q5BAE9), NTE1_ENCCU  (Q8SVN8), NTE1_EREGS  (Q756Z0), 
NTE1_KLULA  (Q6CWC2), NTE1_NEOFI  (A1D9Y2), NTE1_NEUCR  (Q7S8J1), 
NTE1_PYRO7  (A4QVZ8), NTE1_USTMA  (Q4PF83), NTE1_YARLI  (Q6CF18), 
NTE1_YEAST  (Q04958), PLPL6_CAEEL (Q21534), PLPL6_HUMAN (Q8IY17), 
PLPL6_MOUSE (Q3TRM4), PLPL6_PONAB (Q5RDS0), PLPL7_CAEEL (Q02331), 
RSSA_ECOLI  (P0AFR0), RSSA_SHIFL  (P0AFR1), SWS_DROAN   (B3MRI9), 
SWS_DROER   (B3NY03), SWS_DROGR   (B4JLX2), SWS_DROME   (Q9U969), 
SWS_DROMO   (B4L535), SWS_DROPE   (B4H3U8), SWS_DROPS   (B5DKS8), 
SWS_DROSE   (B4IL64), SWS_DROVI   (B4M709), SWS_DROWI   (B4N1W9), 
SWS_DROYA   (B4Q0P3), Y1063_MYCTO (P9WIY8), Y1063_MYCTU (P9WIY9), 
Y1092_MYCBO (P67099), Y2565_MYCTO (P9WIY6), Y2565_MYCTU (P9WIY7), 
Y2594_MYCBO (P0A643), YLBK_BACSU  (O34731)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
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Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

3 sequences

PLPL7_HUMAN (Q6ZV29), PLPL7_MOUSE (A2AJ88), PLPL7_RAT   (Q5BK26)