PROSITE entry PS01284
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General information about the entry
| Entry name [info] | TNASE_2 |
| Accession [info] | PS01284 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00865 |
| Associated ProRule [info] | PRU10049 |
Name and characterization of the entry
| Description [info] | Thermonuclease family signature 2. |
| Pattern [info] |
[DT]-[KRP]-[YQ]-[GQ]-R-x-[LVY]-[GA]-x-[IV]-[FYW]. |
Numerical results [info]
| Total number of hits | 27 in 27 different sequences |
| Number of true positive hits | 27 in 27 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 69 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 28.12 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 5 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
27 sequences
CAN1_ARATH (F4IZC5), CAN1_ORYSJ (Q942N7), NUC_SHIFL (P29769), NUC_STAAC (Q5HHM4), NUC_STAAM (Q99VJ0), NUC_STAAN (Q7A6P2), NUC_STAAR (Q6GIK1), NUC_STAAS (Q6GB41), NUC_STAAU (P00644), NUC_STAAW (Q8NXI6), NUC_STAHY (P43270), NUC_STAIN (P43269), PARB4_ECOLX (P22997), SND1_BOVIN (Q863B3), SND1_DANRE (Q7ZT42), SND1_HUMAN (Q7KZF4), SND1_MOUSE (Q78PY7), SND1_PONAB (Q5REU4), SND1_RAT(Q66X93), Y1296_HAEIN (Q57519), Y1439_METJA (Q58834), Y38K_CAPSE (Q39635), Y6211_BACAN (Q9X397), YFI3_ECO57 (Q7BSX4), YFI3_ECOLX (Q99342), YNCB_BACSU (P94492), YOKF_BACSU (O32001)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
69 sequences
CAN2_ARATH (F4IH31), CAN2_ORYSJ (Q2RBJ2), CAN3_ORYSJ (Q2QYR1), CAN4_ORYSJ (Q2QUS0), HTP3_SAPPC (A0A067CMC7), LCL3_AJEDR (C5GB89), LCL3_ARTGP (E4V094), LCL3_ARTOC (C5FTB4), LCL3_ASPCL (A1CRW4), LCL3_ASPFC (B0XMZ5), LCL3_ASPFN (B8MY73), LCL3_ASPFU (Q4WK77), LCL3_ASPNC (A2Q8K8), LCL3_ASPOR (Q2URN2), LCL3_ASPTN (Q0CUT8), LCL3_BOTFB (A6RP27), LCL3_CANAL (Q5AKW3), LCL3_CANAW (C4YFU9), LCL3_CANDC (B9W9Z5), LCL3_CANGA (Q6FS62), LCL3_CANTT (C5MC60), LCL3_CLAL4 (C4Y4X4), LCL3_COCP7 (C5P0Z4), LCL3_COLGM (E3QWM6), LCL3_CRYGW (E6R427), LCL3_DEBHA (Q6BSY9), LCL3_EMENI (Q5BGS2), LCL3_EREGS (Q754Z2), LCL3_FUSV7 (C7YQ31), LCL3_KLULA (Q6CMM1), LCL3_KOMPG (C4QW04), LCL3_LACBS (B0D7T0), LCL3_LACTC (C5E2G4), LCL3_LEPMJ (E4ZVE5), LCL3_LODEL (A5E1Q5), LCL3_NAKDE (Q874L8), LCL3_NEOFI (A1D4S1), LCL3_PARBA (C1H492), LCL3_PARBD (C1GKM1), LCL3_PARBP (C0SEQ8), LCL3_PENRW (B6H1W0), LCL3_PHANO (Q0UVH1), LCL3_PICGU (A5DNZ8), LCL3_PICST (A3GI61), LCL3_PODAN (B2AU25), LCL3_PYRO7 (A4RMK0), LCL3_PYRTR (B2WC78), LCL3_SCHCM (D8QGA7), LCL3_SCHJY (B6JYT1), LCL3_SCHPO (O60168), LCL3_SCLS1 (A7ECE0), LCL3_TALMQ (B6QNP4), LCL3_UNCRE (C4JVW2), LCL3_VANPO (A7TE94), LCL3_VERA1 (C9SI22), LCL3_YARLI (Q6C427), LCL3_YEAS1 (B3LHF1), LCL3_YEAS2 (C7GW31), LCL3_YEAS6 (B5VIN9), LCL3_YEAS7 (A6ZU94), LCL3_YEAS8 (C8Z8G3), LCL3_YEAST (P53153), LCL3_ZYGRC (C5DZY8), SND1_SCHPO (Q9Y7U7), TSN1_ARATH (Q8VZG7), TSN2_ARATH (Q9FLT0), Y133_MYCPN (P75265), Y186_MYCGE (P47432), YHCR_BACSU (P54602)» more |
| PDB [Detailed view] |
269 PDB
1A2T; 1A2U; 1A3T; 1A3U; 1A3V; 1AEX; 1ENA; 1ENC; 1EQV; 1EY0; 1EY4; 1EY5; 1EY6; 1EY7; 1EY8; 1EY9; 1EYA; 1EYC; 1EYD; 1EZ6; 1EZ8; 1F2M; 1F2Y; 1F2Z; 1JOK; 1JOO; 1JOQ; 1JOR; 1KAA; 1KAB; 1KDA; 1KDB; 1KDC; 1NSN; 1NUC; 1RKN; 1SNC; 1SND; 1SNM; 1SNO; 1SNP; 1SNQ; 1STA; 1STB; 1STG; 1STH; 1STN; 1STY; 1SYB; 1SYC; 1SYD; 1SYE; 1SYF; 1SYG; 1U9R; 2ENB; 2EXZ; 2EY1; 2EY2; 2EY5; 2EY6; 2EYF; 2EYH; 2EYJ; 2EYL; 2EYM; 2EYO; 2EYP; 2F0D; 2F0E; 2F0F; 2F0G; 2F0H; 2F0I; 2F0J; 2F0K; 2F0L; 2F0M; 2F0N; 2F0O; 2F0P; 2F0S; 2F0T; 2F0U; 2F0V; 2F0W; 2F3V; 2F3W; 2KHS; 2LKV; 2M00; 2NUC; 2OXP; 2PQE; 2PW5; 2PW7; 2PYK; 2PZT; 2PZU; 2PZW; 2QDB; 2RBM; 2RDF; 2RKS; 2SNM; 2SNS; 2SOB; 3BDC; 3C1E; 3C1F; 3D4D; 3D4W; 3D6C; 3D8G; 3DMU; 3E5S; 3EJI; 3ERO; 3ERQ; 3EVQ; 3H6M; 3HEJ; 3HZX; 3ITP; 3LX0; 3MHB; 3MVV; 3MXP; 3MZ5; 3NHH; 3NK9; 3NP8; 3NQT; 3NUC; 3NXW; 3OSO; 3OWF; 3P75; 3PMF; 3QOJ; 3QOL; 3R3O; 3RUZ; 3S9W; 3SHL; 3SK4; 3SK5; 3SK6; 3SK8; 3SR1; 3T13; 3T16; 3TME; 3TP5; 3TP6; 3TP7; 3TP8; 3U9O; 4DF7; 4E6I; 4EQN; 4EQO; 4EQP; 4EVO; 4F8M; 4H7B; 4HMI; 4HMJ; 4HTH; 4I65; 4IAL; 4ID6; 4IUN; 4IZ8; 4J1M; 4J6H; 4K14; 4K5V; 4K5W; 4K5X; 4K6D; 4K8I; 4K8J; 4KD4; 4KHV; 4KJN; 4KJO; 4KTA; 4KV6; 4KY5; 4KY6; 4KY7; 4LAA; 4ME5; 4MIU; 4N9P; 4NMZ; 4ODG; 4OL7; 4PMC; 4PNY; 4QB4; 4QF4; 4QMG; 4R8N; 4RKB; 4RKL; 4TRD; 4WOR; 4WRD; 4YIJ; 4ZUI; 4ZUJ; 5C3W; 5C3X; 5C4Z; 5C5L; 5C5M; 5C6A; 5CC4; 5CGK; 5CR3; 5CV4; 5CV5; 5CV8; 5CV9; 5DAU; 5DEH; 5E1F; 5EGT; 5EKK; 5EKL; 5I6W; 5I9O; 5I9P; 5IGB; 5IGC; 5IGE; 5IGF; 5IGG; 5IIF; 5IOC; 5IOD; 5ISR; 5J22; 5JAV; 5K5P; 5KGU; 5KRU; 5KYI; 5KYL; 5NUC; 6AMF; 6B8R; 6EEG; 6EEK; 6OK8; 6U0W; 6U0X; 6XSB; 6XSC; 6XSE; 6XSF; 6XSG; 6XSH; 6XSI; 7KNW; 7KNX; 9C11 » more |