![]() |
|
Entry: PS01287 |
Entry name [info] | RTC |
Accession [info] | PS01287 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00989 |
Description [info] | RNA 3'-terminal phosphate cyclase signature. |
Pattern [info] |
[RH]-G-x(2)-P-x-G(3)-x-[LIV]. |
Total number of hits | 85 in 85 different sequences |
Number of true positive hits | 83 in 83 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 16 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 97.65 % |
Recall (true positives / (true positives + false negatives)) | 83.84 % |
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
83 sequences
RCL1_ARATH (Q9C578 ), RCL1_BOVIN (Q2KHX8 ), RCL1_CAEEL (Q23400 ), RCL1_DICDI (Q54S38 ), RCL1_DROME (P56175 ), RCL1_HUMAN (Q9Y2P8 ), RCL1_MOUSE (Q9JJT0 ), RCL1_SCHPO (Q09870 ), RCL1_YEAST (Q08096 ), RTCA_AERPE (Q9YES0 ), RTCA_AQUAE (O66884 ), RTCA_ARCFU (O28837 ), RTCA_BOVIN (Q2HJ88 ), RTCA_CALMQ (A8MAV7 ), RTCA_DESA1 (B8D680 ), RTCA_DICDI (O15746 ), RTCA_ECO24 (A7ZSU9 ), RTCA_ECO27 (B7UKC4 ), RTCA_ECO45 (B7MDP5 ), RTCA_ECO55 (B7L4U9 ), RTCA_ECO57 (P58127 ), RTCA_ECO5E (B5YTX2 ), RTCA_ECO7I (B7NMI4 ), RTCA_ECO81 (B7N1J7 ), RTCA_ECO8A (B7M2I0 ), RTCA_ECOBW (C4ZVX1 ), RTCA_ECODH (B1X765 ), RTCA_ECOHS (A8A5M8 ), RTCA_ECOK1 (A1AGU3 ), RTCA_ECOL5 (Q0TC48 ), RTCA_ECOL6 (Q8FCS8 ), RTCA_ECOLC (B1IP46 ), RTCA_ECOLI (P46849 ), RTCA_ECOLU (B7NE24 ), RTCA_ECOSM (B1LI80 ), RTCA_ECOUT (Q1R5L5 ), RTCA_ESCF3 (B7LSC2 ), RTCA_HUMAN (O00442 ), RTCA_HYPBU (A2BN21 ), RTCA_IGNH4 (A8A9W2 ), RTCA_KORCO (B1L6E9 ), RTCA_MACFA (Q4R3J0 ), RTCA_METAC (Q8TH85 ), RTCA_METBF (Q46DV9 ), RTCA_METBU (Q12V70 ), RTCA_METJA (Q60335 ), RTCA_METKA (Q8TZC9 ), RTCA_METMA (Q8PXC4 ), RTCA_METS5 (A4YEC3 ), RTCA_METTH (O27937 ), RTCA_METTP (A0B532 ), RTCA_MOUSE (Q9D7H3 ), RTCA_NITMU (Q2Y720 ), RTCA_PONAB (Q5R7P3 ), RTCA_PSEA8 (B7V0C8 ), RTCA_PSEAB (Q02G92 ), RTCA_PSEAE (Q9HVJ9 ), RTCA_PSEF5 (Q4KEB8 ), RTCA_PSEMY (A4XRJ0 ), RTCA_PYRAB (Q9V0Z6 ), RTCA_PYRCJ (A3MXQ7 ), RTCA_PYRFU (Q8U0N7 ), RTCA_PYRHO (O59198 ), RTCA_PYRIL (A1RSJ7 ), RTCA_RALSO (Q8Y2V6 ), RTCA_SACS2 (Q97W04 ), RTCA_SHIB3 (B2U3M8 ), RTCA_SHIBS (Q31VL3 ), RTCA_SHIDS (Q32AN4 ), RTCA_SHISS (Q3YWK6 ), RTCA_STAMF (A3DN24 ), RTCA_SULAC (Q4JB78 ), RTCA_SULIA (C3N179 ), RTCA_SULIK (C4KKE6 ), RTCA_SULIL (C3MKC1 ), RTCA_SULIM (C3MU91 ), RTCA_SULIN (C3NMT8 ), RTCA_SULIY (C3N969 ), RTCA_SULTO (Q974U1 ), RTCA_THEGJ (C5A2A3 ), RTCA_THEKO (Q5JIQ0 ), RTCA_THEON (B6YSJ5 ), RTCA_THESM (C6A4N4 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
16 sequences
RTCA_GLOC7 (B7KCF3 ), RTCA_HALS3 (B0R414 ), RTCA_HALSA (Q9HRE8 ), RTCA_KORVE (Q1IS76 ), RTCA_METCA (Q609M1 ), RTCA_NOSP7 (B2IWJ8 ), RTCA_NOSS1 (Q8YVS3 ), RTCA_PYRAE (Q8ZST4 ), RTCA_PYRNV (B1YDJ1 ), RTCA_SALA4 (B5F8N4 ), RTCA_SALEP (B5R378 ), RTCA_SALG2 (B5R7J6 ), RTCA_SALHS (B4TKU5 ), RTCA_SALPC (C0Q0J3 ), RTCA_SALTY (Q8ZLI0 ), RTCA_TRIV2 (Q3M6L1 )» more |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
BCL7C_HUMAN (Q8WUZ0 ), BCL7C_MOUSE (O08664 ) |
PDB [Detailed view] |
30 PDB
1QMH; 1QMI; 3KGD; 3TUT; 3TUX; 3TV1; 3TW3; 4CLQ; 4O89; 4O8J; 5JPQ; 5TZS; 5WLC; 5WYJ; 5WYK; 6KE6; 6LQP; 6LQQ; 6LQR; 6LQS; 6LQT; 6LQU; 6LQV; 6ZQA; 6ZQB; 6ZQC; 6ZQD; 6ZQE; 6ZQF; 6ZQG » more |