PROSITE entry PS01287
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General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS01287 |
| Entry name [info] | RTC |
| Accession [info] | PS01287 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00989 |
Name and characterization of the entry
| Description [info] | RNA 3'-terminal phosphate cyclase signature. |
| Pattern [info] |
[RH]-G-x(2)-P-x-G(3)-x-[LIV]. |
Numerical results [info]
| Total number of hits | 85 in 85 different sequences |
| Number of true positive hits | 83 in 83 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 2 in 2 different sequences |
| Number of false negative sequences | 16 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 97.65 % |
| Recall (true positives / (true positives + false negatives)) | 83.84 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
83 sequences
RCL1_ARATH (Q9C578), RCL1_BOVIN (Q2KHX8), RCL1_CAEEL (Q23400), RCL1_DICDI (Q54S38), RCL1_DROME (P56175), RCL1_HUMAN (Q9Y2P8), RCL1_MOUSE (Q9JJT0), RCL1_SCHPO (Q09870), RCL1_YEAST (Q08096), RTCA_AERPE (Q9YES0), RTCA_AQUAE (O66884), RTCA_ARCFU (O28837), RTCA_BOVIN (Q2HJ88), RTCA_CALMQ (A8MAV7), RTCA_DESA1 (B8D680), RTCA_DICDI (O15746), RTCA_ECO24 (A7ZSU9), RTCA_ECO27 (B7UKC4), RTCA_ECO45 (B7MDP5), RTCA_ECO55 (B7L4U9), RTCA_ECO57 (P58127), RTCA_ECO5E (B5YTX2), RTCA_ECO7I (B7NMI4), RTCA_ECO81 (B7N1J7), RTCA_ECO8A (B7M2I0), RTCA_ECOBW (C4ZVX1), RTCA_ECODH (B1X765), RTCA_ECOHS (A8A5M8), RTCA_ECOK1 (A1AGU3), RTCA_ECOL5 (Q0TC48), RTCA_ECOL6 (Q8FCS8), RTCA_ECOLC (B1IP46), RTCA_ECOLI (P46849), RTCA_ECOLU (B7NE24), RTCA_ECOSM (B1LI80), RTCA_ECOUT (Q1R5L5), RTCA_ECTM1 (A4XRJ0), RTCA_ESCF3 (B7LSC2), RTCA_HUMAN (O00442), RTCA_HYPBU (A2BN21), RTCA_IGNH4 (A8A9W2), RTCA_KORCO (B1L6E9), RTCA_MACFA (Q4R3J0), RTCA_METAC (Q8TH85), RTCA_METBF (Q46DV9), RTCA_METBU (Q12V70), RTCA_METJA (Q60335), RTCA_METKA (Q8TZC9), RTCA_METMA (Q8PXC4), RTCA_METS5 (A4YEC3), RTCA_METTH (O27937), RTCA_METTP (A0B532), RTCA_MOUSE (Q9D7H3), RTCA_NITMU (Q2Y720), RTCA_PONAB (Q5R7P3), RTCA_PSEA8 (B7V0C8), RTCA_PSEAB (Q02G92), RTCA_PSEAE (Q9HVJ9), RTCA_PSEF5 (Q4KEB8), RTCA_PYRAB (Q9V0Z6), RTCA_PYRCJ (A3MXQ7), RTCA_PYRFU (Q8U0N7), RTCA_PYRHO (O59198), RTCA_PYRIL (A1RSJ7), RTCA_RALN1 (Q8Y2V6), RTCA_SACS2 (Q97W04), RTCA_SHIB3 (B2U3M8), RTCA_SHIBS (Q31VL3), RTCA_SHIDS (Q32AN4), RTCA_SHISS (Q3YWK6), RTCA_STAMF (A3DN24), RTCA_SULAC (Q4JB78), RTCA_SULIA (C3N179), RTCA_SULIK (C4KKE6), RTCA_SULIL (C3MKC1), RTCA_SULIM (C3MU91), RTCA_SULIN (C3NMT8), RTCA_SULIY (C3N969), RTCA_SULTO (Q974U1), RTCA_THEGJ (C5A2A3), RTCA_THEKO (Q5JIQ0), RTCA_THEON (B6YSJ5), RTCA_THESM (C6A4N4)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
16 sequences
RTCA_GLOC7 (B7KCF3), RTCA_HALS3 (B0R414), RTCA_HALSA (Q9HRE8), RTCA_KORVE (Q1IS76), RTCA_METCA (Q609M1), RTCA_NOSP7 (B2IWJ8), RTCA_NOSS1 (Q8YVS3), RTCA_PYRAE (Q8ZST4), RTCA_PYRNV (B1YDJ1), RTCA_SALA4 (B5F8N4), RTCA_SALEP (B5R378), RTCA_SALG2 (B5R7J6), RTCA_SALHS (B4TKU5), RTCA_SALPC (C0Q0J3), RTCA_SALTY (Q8ZLI0), RTCA_TRIV2 (Q3M6L1)» more |
| UniProtKB/Swiss-Prot False positive sequences |
2 sequences
BCL7C_HUMAN (Q8WUZ0), BCL7C_MOUSE (O08664) |
| PDB [Detailed view] |
40 PDB
1QMH; 1QMI; 3KGD; 3TUT; 3TUX; 3TV1; 3TW3; 4CLQ; 4O89; 4O8J; 5JPQ; 5TZS; 5WLC; 5WYJ; 5WYK; 6KE6; 6LQP; 6LQQ; 6LQR; 6LQS; 6LQT; 6LQU; 6LQV; 6ZQA; 6ZQB; 6ZQC; 6ZQD; 6ZQE; 6ZQF; 6ZQG; 7AJT; 7AJU; 7D4I; 7D5S; 7D5T; 7D63; 7MQ8; 7MQ9; 7MQA; 7SUK » more |