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PROSITE entry PS01288


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General information about the entry

Entry name [info] UPF0027
Accession [info] PS01288
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00990

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0027 signature.
Pattern [info] 
Q-[LIVM]-x-N-x-A-x-[LIVM]-P-x-I-x(6)-[LIVM]-P-D-x-H-x-G-x-G-x(2)-[IV]-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 34 in 34 different sequences
Number of true positive hits 34 in 34 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 75.56 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 34 sequences 

RTCB1_CULQU (B0WCT9), RTCB2_CULQU (B0XKF3), RTCB_AEDAE  (Q17FP1), 

RTCB_ANOGA  (Q7Q412), RTCB_BOVIN  (Q5E9T9), RTCB_BRAFL  (C3YN79), 
RTCB_BRUMA  (A8QC60), RTCB_CAEEL  (P90838), RTCB_CHLRE  (A8JC00), 
RTCB_DANRE  (Q6NZS4), RTCB_DICDI  (Q54Y09), RTCB_DROME  (Q9VIW7), 
RTCB_ECOLI  (P46850), RTCB_HUMAN  (Q9Y3I0), RTCB_MACFA  (Q4R6X4), 
RTCB_METJA  (Q58095), RTCB_METKA  (Q8TUS2), RTCB_METMP  (Q6LXF9), 
RTCB_METTH  (O27634), RTCB_MICCC  (C1E9Y5), RTCB_MICPC  (C1MI97), 
RTCB_MONBE  (A9UXG6), RTCB_MOUSE  (Q99LF4), RTCB_MYCBO  (P59975), 
RTCB_MYCTO  (P9WGW4), RTCB_MYCTU  (P9WGW5), RTCB_NEMVE  (A7RKF6), 
RTCB_PAPAN  (A9CB42), RTCB_PIG(Q19PY3), RTCB_RAT(Q6AYT3), 
RTCB_THEAN  (Q4U923), RTCB_THEPA  (Q4N1R8), RTCB_TRIAD  (B3RID0), 
RTCB_XENTR  (Q561P3)
» more

UniProtKB/Swiss-Prot
False negative sequences		 11 sequences 

RTCB1_ENTDS (B0EAV2), RTCB1_ENTH1 (C4M244), RTCB2_ENTDS (B0EIW5), 

RTCB2_ENTH1 (C4M6T2), RTCB_OSTLU  (A4S3S3), RTCB_OSTTA  (Q00ZY2), 
RTCB_PLABA  (Q4YUZ9), RTCB_PLAF7  (Q8IIU6), RTCB_PLAKH  (B3L4K9), 
RTCB_PLAYO  (Q7RI54), RTCB_THAPS  (B8LBM8)
» more

PDB
[Detailed view]		 1 PDB

7P3B