PROSITE entry PS01288
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General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS01288 |
| Entry name [info] | UPF0027 |
| Accession [info] | PS01288 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00990 |
Name and characterization of the entry
| Description [info] | Uncharacterized protein family UPF0027 signature. |
| Pattern [info] |
Q-[LIVM]-x-N-x-A-x-[LIVM]-P-x-I-x(6)-[LIVM]-P-D-x-H-x-G-x-G-x(2)-[IV]-G. |
Numerical results [info]
| Total number of hits | 35 in 35 different sequences |
| Number of true positive hits | 35 in 35 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 11 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 76.09 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
35 sequences
RTCB1_CULQU (B0WCT9), RTCB1_ECOS1 (P0DX92), RTCB2_CULQU (B0XKF3), RTCB_AEDAE (Q17FP1), RTCB_ANOGA (Q7Q412), RTCB_BOVIN (Q5E9T9), RTCB_BRAFL (C3YN79), RTCB_BRUMA (A8QC60), RTCB_CAEEL (P90838), RTCB_CHLRE (A8JC00), RTCB_DANRE (Q6NZS4), RTCB_DICDI (Q54Y09), RTCB_DROME (Q9VIW7), RTCB_ECOLI (P46850), RTCB_HUMAN (Q9Y3I0), RTCB_MACFA (Q4R6X4), RTCB_METJA (Q58095), RTCB_METKA (Q8TUS2), RTCB_METMP (Q6LXF9), RTCB_METTH (O27634), RTCB_MICCC (C1E9Y5), RTCB_MICPC (C1MI97), RTCB_MONBE (A9UXG6), RTCB_MOUSE (Q99LF4), RTCB_MYCBO (P59975), RTCB_MYCTO (P9WGW4), RTCB_MYCTU (P9WGW5), RTCB_NEMVE (A7RKF6), RTCB_PAPAN (A9CB42), RTCB_PIG(Q19PY3), RTCB_RAT(Q6AYT3), RTCB_THEAN (Q4U923), RTCB_THEPA (Q4N1R8), RTCB_TRIAD (B3RID0), RTCB_XENTR (Q561P3)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
11 sequences
RTCB1_ENTDS (B0EAV2), RTCB1_ENTH1 (C4M244), RTCB2_ENTDS (B0EIW5), RTCB2_ENTH1 (C4M6T2), RTCB_OSTLU (A4S3S3), RTCB_OSTTA (Q00ZY2), RTCB_PLABA (Q4YUZ9), RTCB_PLAF7 (Q8IIU6), RTCB_PLAKH (B3L4K9), RTCB_PLAYO (Q7RI54), RTCB_THAPS (B8LBM8)» more |
| PDB [Detailed view] |
5 PDB
7P3B; 8BTT; 8ODO; 8ODP; 8ORJ |