PROSITE entry PS01292

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General information about the entry

Entry name [info]	UPF0036
Accession [info]	PS01292
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00994

Name and characterization of the entry

Description [info]	Uncharacterized protein family UPF0036 signature.
Pattern [info]	H-x-S-G-H-[GA]-x(3)-[DE]-x(3)-[LM]-x(5)-P-x(3)-[LIVM]-P-x-H-G-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	24 in 24 different sequences
Number of true positive hits	24 in 24 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	21
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	53.33 %

Comments [info]

Taxonomic range [info]	Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

24 sequences

RNJ1_BACSU  (Q45493), RNJ1_STAA3  (Q2FHZ1), RNJ1_STAA8  (Q2FZG9),

RNJ1_STAAB  (Q2YX35), RNJ1_STAAC  (Q5HGZ5), RNJ1_STAAM  (Q99V09), 
RNJ1_STAAN  (Q7A682), RNJ1_STAAR  (Q6GHZ6), RNJ1_STAAS  (Q6GAC5), 
RNJ1_STAAW  (Q7A171), RNJ1_STAEQ  (Q5HQ80), RNJ1_STAES  (Q8CT16), 
RNJ1_STAHJ  (Q4L5A3), RNJ1_STAS1  (Q49WL3), RNJ1_STRP3  (Q8K5W8), 
RNJ_CORGL   (P54122), RNJ_HELP8   (B9XZG7), RNJ_HELPJ   (Q9ZJI6), 
RNJ_HELPY   (P56185), RNJ_METJA   (Q58271), RNJ_MYCGE   (P47385), 
RNJ_MYCPN   (P75497), RNJ_PYRAB   (Q9V076), RNJ_SYNY3   (P54123)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

21 sequences

RNJ2_BACSU  (O31760), RNJ2_STAA3  (Q2FHG3), RNJ2_STAA8  (Q2FZ19),

RNJ2_STAAB  (Q2YXP1), RNJ2_STAAC  (Q5HGF6), RNJ2_STAAM  (Q99UJ7), 
RNJ2_STAAN  (Q7A5X6), RNJ2_STAAR  (Q6GHG0), RNJ2_STAAS  (Q6G9T8), 
RNJ2_STAAW  (Q7A115), RNJ2_STAEQ  (Q5HPR6), RNJ2_STAES  (Q8CST0), 
RNJ2_STAHJ  (Q4L5X8), RNJ2_STAS1  (Q49X63), RNJ2_STRP3  (Q8K7S6), 
RNJ_HALSA   (Q9HQI4), RNJ_MYCS2   (A0QVT2), RNJ_MYCTO   (P9WGZ8), 
RNJ_MYCTU   (P9WGZ9), RNJ_SINM2   (M4MR97), RNJ_THET2   (Q72JJ7)

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PDB
[Detailed view]

4 PDB

3ZQ4; 6K6S; 7PCR; 8CGL