PROSITE entry PS01330
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS01330
Direct ScanProsite submission
General information about the entry
| Entry name [info] | PABS_1 |
| Accession [info] | PS01330 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUL-1999 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC01033 |
Name and characterization of the entry
| Description [info] | Polyamine biosynthesis (PABS) domain signature. |
| Pattern [info] |
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E. |
Numerical results [info]
| Total number of hits | 214 in 214 different sequences |
| Number of true positive hits | 214 in 214 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 42 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 83.59 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
214 sequences
PMT1_ANIAC (B4YSH2), PMT1_ATRBE (Q9S7W8), PMT1_NICAT (Q93XQ5), PMT1_TOBAC (Q42963), PMT2_ANIAC (B4YSH3), PMT2_ATRBE (Q9XJ42), PMT2_NICAT (Q93XQ4), PMT2_TOBAC (Q9SEH7), PMT3_NICAT (A0A314LG79), PMT3_TOBAC (Q9SEH5), PMT4_TOBAC (Q9SEH4), PMT_DATST (Q70EW6), SMT_ERYCB (A0A9E9KU71), SMT_ERYNO (A0AAV8TXX1), SPDE_COFAR (O82147), SPDE_NICSY (O48660), SPDE_SOLLC (Q9ZS45), SPDS1_ARATH (Q9ZUB3), SPDS1_DATST (Q96556), SPDS1_HYONI (O48658), SPDS1_ORYSJ (Q9SMB1), SPDS1_PEA (Q9ZTR1), SPDS2_ARATH (O48661), SPDS2_DATST (Q96557), SPDS2_HYONI (O48659), SPDS2_PEA (Q9ZTR0), SPEE1_AQUAE (O66473), SPEE1_BACAN (Q81JT0), SPEE1_BACCR (Q814Q1), SPEE1_CALS4 (Q8RA94), SPEE1_HYPBU (A2BIX4), SPEE1_LEPIN (Q8EZP1), SPEE1_PSEAE (Q9X6R0), SPEE2_AQUAE (O67365), SPEE2_BACAN (Q81X05), SPEE2_BACCR (Q815E8), SPEE2_HYPBU (A2BJU2), SPEE2_LEPIN (Q8EXA3), SPEE2_PSEAE (Q9HV34), SPEE2_STRCO (Q9X8S2), SPEE_ACET2 (A3DDA0), SPEE_AERPE (Q9YE02), SPEE_AGARV (C4ZDU4), SPEE_ALKEH (Q0ACK7), SPEE_ALKMQ (A6TRI3), SPEE_ARCFU (O27950), SPEE_BACC1 (Q72X78), SPEE_BACCN (A7GVB2), SPEE_BACMK (A9VSG3), SPEE_BACSU (P70998), SPEE_BUCA5 (B8D908), SPEE_BUCAI (P57305), SPEE_BUCAP (Q8K9T5), SPEE_BUCAT (B8D7B3), SPEE_CALBD (B9MRW0), SPEE_CALS8 (A4XKM9), SPEE_CITK8 (A8ALG8), SPEE_CLOD6 (Q18A85), SPEE_CLOK1 (B9E5S1), SPEE_CLOK5 (A5N219), SPEE_CLOTE (Q891W4), SPEE_COREF (Q8FMF7), SPEE_DESAP (B1I5Z0), SPEE_DICDI (Q9XY92), SPEE_ECO24 (A7ZHL0), SPEE_ECO27 (B7UIG9), SPEE_ECO45 (B7MBA4), SPEE_ECO55 (B7LFY8), SPEE_ECO57 (P66834), SPEE_ECO5E (B5YZF6), SPEE_ECO7I (B7NI81), SPEE_ECO81 (B7MNY3), SPEE_ECO8A (B7M162), SPEE_ECOBW (C4ZRL4), SPEE_ECODH (B1XC96), SPEE_ECOHS (A7ZW70), SPEE_ECOK1 (A1A7G7), SPEE_ECOL5 (Q0TLL3), SPEE_ECOL6 (P66833), SPEE_ECOLC (B1IQL9), SPEE_ECOLI (P09158), SPEE_ECOLU (B7N7Z1), SPEE_ECOSE (B6HZ96), SPEE_ECOSM (B1LGS2), SPEE_ECOUT (Q1RG70), SPEE_ENT38 (A4W6M6), SPEE_ERWT9 (B2VD21), SPEE_ESCF3 (B7LVY5), SPEE_HALH5 (Q9K6B8), SPEE_HALHL (A1WZR2), SPEE_HAMD5 (C4K3X3), SPEE_HUMAN (P19623), SPEE_HYDS0 (B4U8W2), SPEE_KLEP7 (A6T4R6), SPEE_KLEV3 (B5Y1R1), SPEE_KORCO (B1L5H2), SPEE_LEPBA (B0SI93), SPEE_LEPBP (B0STV8), SPEE_LEPIC (Q72V65), SPEE_METJA (Q57761), SPEE_MOOTA (Q2RHH3), SPEE_MOUSE (Q64674), SPEE_MYCBO (Q7TY95), SPEE_MYCTO (P9WGE4), SPEE_MYCTU (P9WGE5), SPEE_NEUCR (Q9Y8H7), SPEE_NITOC (Q3JDL8), SPEE_OCEIH (Q8CV14), SPEE_PARMW (Q7U3L0), SPEE_PECAS (Q6D1W4), SPEE_PECCP (C6DC58), SPEE_PHOLL (Q7N892), SPEE_PROM0 (A3PFH4), SPEE_PROM1 (A2C5F4), SPEE_PROM2 (A8G7J0), SPEE_PROM3 (A2CDX0), SPEE_PROM5 (A2BZ72), SPEE_PROM9 (Q317V6), SPEE_PROMA (Q7V9I5), SPEE_PROMM (Q7V3X3), SPEE_PROMP (Q7UZI0), SPEE_PROMS (A2BTR7), SPEE_PROMT (Q46IA2), SPEE_PSESM (Q884N3), SPEE_PYRAB (Q9V277), SPEE_PYRAE (Q8ZXM4), SPEE_PYRAR (A4WHN0), SPEE_PYRCJ (A3MU81), SPEE_PYRFU (Q8U4G1), SPEE_PYRHO (O57950), SPEE_PYRIL (A1RU43), SPEE_PYRNV (B1YB61), SPEE_RHOBA (Q7UWD1), SPEE_RUEST (Q1GGU4), SPEE_SACI1 (C3NHE1), SPEE_SACI2 (C3MQ26), SPEE_SACI3 (C3N5P4), SPEE_SACI4 (C3MVE5), SPEE_SACI6 (C4KHC0), SPEE_SACI7 (C3NEA8), SPEE_SACS2 (Q9UXE4), SPEE_SALA4 (B5F815), SPEE_SALAR (A9MPN3), SPEE_SALCH (Q57T89), SPEE_SALDC (B5FIB4), SPEE_SALEP (B5R2R5), SPEE_SALG2 (B5RHA5), SPEE_SALHS (B4TJD2), SPEE_SALNS (B4SU91), SPEE_SALPA (Q5PDA0), SPEE_SALPB (A9MZR2), SPEE_SALPC (C0Q5M7), SPEE_SALPK (B5BL97), SPEE_SALSV (B4TXL7), SPEE_SALTI (Q8Z9E2), SPEE_SALTY (Q8ZRS3), SPEE_SCHPO (Q09741), SPEE_SERP5 (A8GJ06), SPEE_SHIB3 (B2U2X0), SPEE_SHIBS (Q326B5), SPEE_SHIDS (Q32K90), SPEE_SHIF8 (Q0T879), SPEE_SHIFL (Q83MF0), SPEE_SHISS (Q3Z5N9), SPEE_SHOC1 (Q5WB31), SPEE_SODGM (Q2NVS1), SPEE_STRAW (Q82EU4), SPEE_STRM5 (B4SM23), SPEE_STRMK (B2FKR1), SPEE_SULAC (Q4JAZ8), SPEE_SULTO (Q975S5), SPEE_SYNE7 (Q31QK9), SPEE_SYNP6 (Q5N3N4), SPEE_SYNS3 (Q0I685), SPEE_THEKO (Q5JFG9), SPEE_THEMA (Q9WZC2), SPEE_THENN (B9KAY3), SPEE_THEON (B6YXJ9), SPEE_THEP1 (A5IJD3), SPEE_THEP3 (B0K9I5), SPEE_THEPX (B0K172), SPEE_THET2 (Q72K55), SPEE_THET8 (Q5SK28), SPEE_THISH (B8GQ45), SPEE_XANC3 (Q8PFQ4), SPEE_XANC8 (Q4UPN0), SPEE_XANCB (B0RXN7), SPEE_XANCP (Q8P447), SPEE_XANE5 (Q3BN93), SPEE_XANOM (Q2P928), SPEE_XANOP (B2SHF6), SPEE_XANOR (Q5H6E7), SPEE_XYLF2 (B2I6M0), SPEE_XYLFA (Q9PH03), SPEE_XYLFM (B0U1H5), SPEE_XYLFT (Q87F26), SPEE_YEAST (Q12074), SPEE_YERE8 (A1JJM8), SPEE_YERP3 (A7FM33), SPEE_YERPA (Q1C3U7), SPEE_YERPB (B2K4I2), SPEE_YERPE (Q8ZBJ8), SPEE_YERPG (A9R1H4), SPEE_YERPN (Q1CLX1), SPEE_YERPP (A4TPU4), SPEE_YERPS (Q66EH3), SPEE_YERPY (B1JK45), SPMT1_ERYCB (A0A9E9KUX0), SPMT1_ERYNO (A0AAV8SY32), SPSY_ARATH (Q94BN2), SPSY_BOVIN (Q3SZA5), SPSY_HUMAN (P52788), SPSY_MOUSE (P97355), SPSY_YEAST (Q12455)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
42 sequences
ACL5_ARATH (Q9S7X6), SPDS1_ERYCB (A0A9E9KU69), SPDS1_ERYNO (A0AAV8SEA8), SPEE1_RALN1 (Q8XQC8), SPEE1_STRCO (Q9L091), SPEE2_CALS4 (Q8R977), SPEE2_RALN1 (Q8XQC5), SPEE_ALKOO (A8MLM9), SPEE_BIFLO (Q8G4L4), SPEE_CHRVO (Q7NQK7), SPEE_CLOAB (Q97FX3), SPEE_CLOB8 (A6M1N9), SPEE_CLOBA (B2V328), SPEE_CLOBB (B2TMY2), SPEE_CLOP1 (Q0TTQ7), SPEE_CLOPE (Q8XMY8), SPEE_CLOPS (Q0SVK7), SPEE_HELAH (Q17WL9), SPEE_HELP2 (B6JM63), SPEE_HELPG (B5Z7J7), SPEE_HELPH (Q1CT37), SPEE_HELPJ (Q9ZL11), SPEE_HELPS (B2USZ6), SPEE_HELPY (O25503), SPEE_LACE2 (C4Z1Q7), SPEE_LACP7 (A9KQ99), SPEE_METCA (Q606H1), SPEE_NEIMA (P60593), SPEE_NEIMB (P60594), SPEE_NITEU (Q82XD4), SPEE_PICTO (Q6L1F4), SPEE_SHEON (Q8EAX8), SPEE_STRPN (P66835), SPEE_STRR6 (P66836), SPEE_STRU0 (B9DUY3), SPEE_SYNJA (Q2JQS1), SPEE_SYNJB (Q2JQ57), SPEE_THEAC (Q9HL75), SPEE_THEVO (Q97BN7), SPEE_VIBVU (Q8D3Q3), SPEE_VIBVY (Q7MF74), SPEE_WOLSU (Q7M7Q6)» more |
| PDB [Detailed view] |
26 PDB
pdb_00001inl; pdb_00001iy9; pdb_00001jq3; pdb_00001mjf; pdb_00001uir; pdb_00001xj5; pdb_00002e5w; pdb_00002o05; pdb_00002o06; pdb_00002o07; pdb_00002o0l; pdb_00002q41; pdb_00002zsu; pdb_00003anx; pdb_00003c6k; pdb_00003c6m; pdb_00003o4f; pdb_00003rw9; pdb_00006o63; pdb_00006o64; pdb_00006o65; pdb_00006qmm; pdb_00007xif; pdb_00007xig; pdb_00007xih; pdb_00007xii » more |