PROSITE logo

PROSITE entry PS01330


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] PABS_1
Accession [info] PS01330
Entry type [info] PATTERN
Date [info] 01-JUL-1999 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC01033

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain signature.
Pattern [info]
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 205 in 205 different sequences
Number of true positive hits 205 in 205 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 83.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
205 sequences

PMT1_NICAT  (Q93XQ5), PMT1_TOBAC  (Q42963), PMT2_NICAT  (Q93XQ4), 
PMT2_TOBAC  (Q9SEH7), PMT3_NICAT  (A0A314LG79), PMT3_TOBAC  (Q9SEH5), 
PMT4_TOBAC  (Q9SEH4), SPDE_COFAR  (O82147), SPDE_NICSY  (O48660), 
SPDE_SOLLC  (Q9ZS45), SPDS1_ARATH (Q9ZUB3), SPDS1_DATST (Q96556), 
SPDS1_HYONI (O48658), SPDS1_ORYSJ (Q9SMB1), SPDS1_PEA   (Q9ZTR1), 
SPDS2_ARATH (O48661), SPDS2_DATST (Q96557), SPDS2_HYONI (O48659), 
SPDS2_PEA   (Q9ZTR0), SPEE1_AQUAE (O66473), SPEE1_BACAN (Q81JT0), 
SPEE1_BACCR (Q814Q1), SPEE1_CALS4 (Q8RA94), SPEE1_HYPBU (A2BIX4), 
SPEE1_LEPIN (Q8EZP1), SPEE1_PSEAE (Q9X6R0), SPEE2_AQUAE (O67365), 
SPEE2_BACAN (Q81X05), SPEE2_BACCR (Q815E8), SPEE2_HYPBU (A2BJU2), 
SPEE2_LEPIN (Q8EXA3), SPEE2_PSEAE (Q9HV34), SPEE2_STRCO (Q9X8S2), 
SPEE_ACET2  (A3DDA0), SPEE_AERPE  (Q9YE02), SPEE_AGARV  (C4ZDU4), 
SPEE_ALKEH  (Q0ACK7), SPEE_ALKMQ  (A6TRI3), SPEE_ARCFU  (O27950), 
SPEE_BACC1  (Q72X78), SPEE_BACCN  (A7GVB2), SPEE_BACMK  (A9VSG3), 
SPEE_BACSU  (P70998), SPEE_BUCA5  (B8D908), SPEE_BUCAI  (P57305), 
SPEE_BUCAP  (Q8K9T5), SPEE_BUCAT  (B8D7B3), SPEE_CALBD  (B9MRW0), 
SPEE_CALS8  (A4XKM9), SPEE_CITK8  (A8ALG8), SPEE_CLOD6  (Q18A85), 
SPEE_CLOK1  (B9E5S1), SPEE_CLOK5  (A5N219), SPEE_CLOTE  (Q891W4), 
SPEE_COREF  (Q8FMF7), SPEE_DESAP  (B1I5Z0), SPEE_DICDI  (Q9XY92), 
SPEE_ECO24  (A7ZHL0), SPEE_ECO27  (B7UIG9), SPEE_ECO45  (B7MBA4), 
SPEE_ECO55  (B7LFY8), SPEE_ECO57  (P66834), SPEE_ECO5E  (B5YZF6), 
SPEE_ECO7I  (B7NI81), SPEE_ECO81  (B7MNY3), SPEE_ECO8A  (B7M162), 
SPEE_ECOBW  (C4ZRL4), SPEE_ECODH  (B1XC96), SPEE_ECOHS  (A7ZW70), 
SPEE_ECOK1  (A1A7G7), SPEE_ECOL5  (Q0TLL3), SPEE_ECOL6  (P66833), 
SPEE_ECOLC  (B1IQL9), SPEE_ECOLI  (P09158), SPEE_ECOLU  (B7N7Z1), 
SPEE_ECOSE  (B6HZ96), SPEE_ECOSM  (B1LGS2), SPEE_ECOUT  (Q1RG70), 
SPEE_ENT38  (A4W6M6), SPEE_ERWT9  (B2VD21), SPEE_ESCF3  (B7LVY5), 
SPEE_HALH5  (Q9K6B8), SPEE_HALHL  (A1WZR2), SPEE_HAMD5  (C4K3X3), 
SPEE_HUMAN  (P19623), SPEE_HYDS0  (B4U8W2), SPEE_KLEP3  (B5Y1R1), 
SPEE_KLEP7  (A6T4R6), SPEE_KORCO  (B1L5H2), SPEE_LEPBA  (B0SI93), 
SPEE_LEPBP  (B0STV8), SPEE_LEPIC  (Q72V65), SPEE_METJA  (Q57761), 
SPEE_MOOTA  (Q2RHH3), SPEE_MOUSE  (Q64674), SPEE_MYCBO  (Q7TY95), 
SPEE_MYCTO  (P9WGE4), SPEE_MYCTU  (P9WGE5), SPEE_NEUCR  (Q9Y8H7), 
SPEE_NITOC  (Q3JDL8), SPEE_OCEIH  (Q8CV14), SPEE_PARMW  (Q7U3L0), 
SPEE_PECAS  (Q6D1W4), SPEE_PECCP  (C6DC58), SPEE_PHOLL  (Q7N892), 
SPEE_PROM0  (A3PFH4), SPEE_PROM1  (A2C5F4), SPEE_PROM2  (A8G7J0), 
SPEE_PROM3  (A2CDX0), SPEE_PROM5  (A2BZ72), SPEE_PROM9  (Q317V6), 
SPEE_PROMA  (Q7V9I5), SPEE_PROMM  (Q7V3X3), SPEE_PROMP  (Q7UZI0), 
SPEE_PROMS  (A2BTR7), SPEE_PROMT  (Q46IA2), SPEE_PSESM  (Q884N3), 
SPEE_PYRAB  (Q9V277), SPEE_PYRAE  (Q8ZXM4), SPEE_PYRAR  (A4WHN0), 
SPEE_PYRCJ  (A3MU81), SPEE_PYRFU  (Q8U4G1), SPEE_PYRHO  (O57950), 
SPEE_PYRIL  (A1RU43), SPEE_PYRNV  (B1YB61), SPEE_RHOBA  (Q7UWD1), 
SPEE_RUEST  (Q1GGU4), SPEE_SACS2  (Q9UXE4), SPEE_SALA4  (B5F815), 
SPEE_SALAR  (A9MPN3), SPEE_SALCH  (Q57T89), SPEE_SALDC  (B5FIB4), 
SPEE_SALEP  (B5R2R5), SPEE_SALG2  (B5RHA5), SPEE_SALHS  (B4TJD2), 
SPEE_SALNS  (B4SU91), SPEE_SALPA  (Q5PDA0), SPEE_SALPB  (A9MZR2), 
SPEE_SALPC  (C0Q5M7), SPEE_SALPK  (B5BL97), SPEE_SALSV  (B4TXL7), 
SPEE_SALTI  (Q8Z9E2), SPEE_SALTY  (Q8ZRS3), SPEE_SCHPO  (Q09741), 
SPEE_SERP5  (A8GJ06), SPEE_SHIB3  (B2U2X0), SPEE_SHIBS  (Q326B5), 
SPEE_SHIDS  (Q32K90), SPEE_SHIF8  (Q0T879), SPEE_SHIFL  (Q83MF0), 
SPEE_SHISS  (Q3Z5N9), SPEE_SHOC1  (Q5WB31), SPEE_SODGM  (Q2NVS1), 
SPEE_STRAW  (Q82EU4), SPEE_STRM5  (B4SM23), SPEE_STRMK  (B2FKR1), 
SPEE_SULAC  (Q4JAZ8), SPEE_SULIA  (C3N5P4), SPEE_SULIK  (C4KHC0), 
SPEE_SULIL  (C3MQ26), SPEE_SULIM  (C3MVE5), SPEE_SULIN  (C3NHE1), 
SPEE_SULIY  (C3NEA8), SPEE_SULTO  (Q975S5), SPEE_SYNE7  (Q31QK9), 
SPEE_SYNP6  (Q5N3N4), SPEE_SYNS3  (Q0I685), SPEE_THEKO  (Q5JFG9), 
SPEE_THEMA  (Q9WZC2), SPEE_THENN  (B9KAY3), SPEE_THEON  (B6YXJ9), 
SPEE_THEP1  (A5IJD3), SPEE_THEP3  (B0K9I5), SPEE_THEPX  (B0K172), 
SPEE_THET2  (Q72K55), SPEE_THET8  (Q5SK28), SPEE_THISH  (B8GQ45), 
SPEE_XANAC  (Q8PFQ4), SPEE_XANC8  (Q4UPN0), SPEE_XANCB  (B0RXN7), 
SPEE_XANCP  (Q8P447), SPEE_XANE5  (Q3BN93), SPEE_XANOM  (Q2P928), 
SPEE_XANOP  (B2SHF6), SPEE_XANOR  (Q5H6E7), SPEE_XYLF2  (B2I6M0), 
SPEE_XYLFA  (Q9PH03), SPEE_XYLFM  (B0U1H5), SPEE_XYLFT  (Q87F26), 
SPEE_YEAST  (Q12074), SPEE_YERE8  (A1JJM8), SPEE_YERP3  (A7FM33), 
SPEE_YERPA  (Q1C3U7), SPEE_YERPB  (B2K4I2), SPEE_YERPE  (Q8ZBJ8), 
SPEE_YERPG  (A9R1H4), SPEE_YERPN  (Q1CLX1), SPEE_YERPP  (A4TPU4), 
SPEE_YERPS  (Q66EH3), SPEE_YERPY  (B1JK45), SPSY_ARATH  (Q94BN2), 
SPSY_BOVIN  (Q3SZA5), SPSY_HUMAN  (P52788), SPSY_MOUSE  (P97355), 
SPSY_YEAST  (Q12455)
» more

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

ACL5_ARATH  (Q9S7X6), SPEE1_RALN1 (Q8XQC8), SPEE1_STRCO (Q9L091), 
SPEE2_CALS4 (Q8R977), SPEE2_RALN1 (Q8XQC5), SPEE_ALKOO  (A8MLM9), 
SPEE_BIFLO  (Q8G4L4), SPEE_CHRVO  (Q7NQK7), SPEE_CLOAB  (Q97FX3), 
SPEE_CLOB8  (A6M1N9), SPEE_CLOBA  (B2V328), SPEE_CLOBB  (B2TMY2), 
SPEE_CLOP1  (Q0TTQ7), SPEE_CLOPE  (Q8XMY8), SPEE_CLOPS  (Q0SVK7), 
SPEE_HELAH  (Q17WL9), SPEE_HELP2  (B6JM63), SPEE_HELPG  (B5Z7J7), 
SPEE_HELPH  (Q1CT37), SPEE_HELPJ  (Q9ZL11), SPEE_HELPS  (B2USZ6), 
SPEE_HELPY  (O25503), SPEE_LACE2  (C4Z1Q7), SPEE_LACP7  (A9KQ99), 
SPEE_METCA  (Q606H1), SPEE_NEIMA  (P60593), SPEE_NEIMB  (P60594), 
SPEE_NITEU  (Q82XD4), SPEE_PICTO  (Q6L1F4), SPEE_SHEON  (Q8EAX8), 
SPEE_STRPN  (P66835), SPEE_STRR6  (P66836), SPEE_STRU0  (B9DUY3), 
SPEE_SYNJA  (Q2JQS1), SPEE_SYNJB  (Q2JQ57), SPEE_THEAC  (Q9HL75), 
SPEE_THEVO  (Q97BN7), SPEE_VIBVU  (Q8D3Q3), SPEE_VIBVY  (Q7MF74), 
SPEE_WOLSU  (Q7M7Q6)
» more

PDB
[Detailed view]
26 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2E5W; 2O05; 2O06; 2O07; 2O0L; 2Q41; 2ZSU; 3ANX; 3C6K; 3C6M; 3O4F; 3RW9; 6O63; 6O64; 6O65; 6QMM; 7XIF; 7XIG; 7XIH; 7XII
» more