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PROSITE entry PS01332


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General information about the entry

Entry name [info] HTH_RRF2_1
Accession [info] PS01332
Entry type [info] PATTERN
Date [info] 01-JUL-1999 CREATED;
01-DEC-2001 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC01035

Name and characterization of the entry

Description [info] Rrf2-type HTH domain signature.
Pattern [info]
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 139 in 139 different sequences
Number of true positive hits 138 in 138 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.28 %
Recall (true positives / (true positives + false negatives)) 87.34 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
138 sequences

AAU3_RHIME  (Q9R9M8), BADM_RHOPA  (O07465), CYMR_BACSU  (O34527), 
ISCR_ALISL  (B6EGX4), ISCR_CERS4  (Q3J0R9), ISCR_CITK8  (A8AD51), 
ISCR_CROS8  (A7MGX6), ISCR_ECO24  (A7ZPX5), ISCR_ECO27  (B7UGX7), 
ISCR_ECO45  (B7MIM1), ISCR_ECO55  (B7LDC3), ISCR_ECO57  (P0AGL0), 
ISCR_ECO5E  (B5Z105), ISCR_ECO7I  (B7NRI0), ISCR_ECO81  (B7MYG4), 
ISCR_ECO8A  (B7M7N4), ISCR_ECOBW  (C4ZXA6), ISCR_ECODH  (B1XB06), 
ISCR_ECOHS  (A8A337), ISCR_ECOK1  (A1AE68), ISCR_ECOL5  (Q0TEV4), 
ISCR_ECOL6  (P0AGK9), ISCR_ECOLC  (B1IWD0), ISCR_ECOLI  (P0AGK8), 
ISCR_ECOLU  (B7N6B8), ISCR_ECOSE  (B6I5A3), ISCR_ECOSM  (B1LNI7), 
ISCR_ECOUT  (Q1R8K1), ISCR_EDWI9  (C5BEU6), ISCR_ENT38  (A4WDB2), 
ISCR_ERWT9  (B2VI31), ISCR_ESCF3  (B7LJQ3), ISCR_KLEP3  (B5XNJ6), 
ISCR_KLEP7  (A6TCF2), ISCR_PECAS  (Q6D258), ISCR_PECCP  (C6DBJ2), 
ISCR_PHOLL  (Q7N223), ISCR_PHOPR  (Q6LU63), ISCR_SALA4  (B5F1C1), 
ISCR_SALAR  (A9MHJ3), ISCR_SALCH  (Q57LG8), ISCR_SALDC  (B5FR87), 
ISCR_SALEP  (B5R5A3), ISCR_SALG2  (B5RD13), ISCR_SALHS  (B4TDB7), 
ISCR_SALNS  (B4T1C0), ISCR_SALPA  (Q5PNG2), ISCR_SALPB  (A9N1X3), 
ISCR_SALPC  (C0PYK6), ISCR_SALPK  (B5BAW5), ISCR_SALSV  (B4TRX7), 
ISCR_SALTI  (Q8XF25), ISCR_SALTY  (Q7CQ10), ISCR_SERP5  (A8GHY4), 
ISCR_SHIB3  (B2TXV6), ISCR_SHIBS  (Q31XV9), ISCR_SHIDS  (Q32D33), 
ISCR_SHIF8  (Q0T1Y8), ISCR_SHIFL  (P0AGL1), ISCR_SHISS  (Q3YZ21), 
ISCR_VIBA3  (B7VJS5), ISCR_VIBC1  (A7MU47), ISCR_VIBCH  (Q9KTY3), 
ISCR_VIBPA  (Q87S29), ISCR_VIBVU  (Q8DEY6), ISCR_VIBVY  (Q7MNG3), 
ISCR_XENNA  (Q8GLE9), ISCR_YERE8  (A1JKQ1), ISCR_YERP3  (A7FFX0), 
ISCR_YERPA  (Q1C5G9), ISCR_YERPE  (Q0WD07), ISCR_YERPG  (A9R819), 
ISCR_YERPN  (Q1CKB0), ISCR_YERPP  (A4TMV5), ISCR_YERPS  (Q667Y0), 
NSRR_ALIF1  (Q5E2D6), NSRR_ALIFM  (B5FBQ6), NSRR_BACLD  (Q65M01), 
NSRR_BACSU  (O07573), NSRR_ECO24  (A7ZV48), NSRR_ECO27  (B7UQI7), 
NSRR_ECO45  (B7MLI3), NSRR_ECO55  (B7LC37), NSRR_ECO57  (P0AF65), 
NSRR_ECO5E  (B5Z2I4), NSRR_ECO7I  (B7NTN4), NSRR_ECO81  (B7MSJ6), 
NSRR_ECO8A  (B7M8T8), NSRR_ECOBW  (C4ZR55), NSRR_ECODH  (B1XDS9), 
NSRR_ECOHS  (A8A7S3), NSRR_ECOK1  (A1AJ83), NSRR_ECOL5  (Q0T9L5), 
NSRR_ECOL6  (P0AF64), NSRR_ECOLC  (B1IT28), NSRR_ECOLI  (P0AF63), 
NSRR_ECOLU  (B7NGB2), NSRR_ECOSE  (B6I282), NSRR_ECOSM  (B1LQJ8), 
NSRR_ECOUT  (Q1R382), NSRR_ENT38  (A4W5R9), NSRR_ESCF3  (B7LLW0), 
NSRR_GEOKA  (Q5KZ63), NSRR_HALH5  (Q9RC41), NSRR_KLEP3  (B5Y324), 
NSRR_KLEP7  (A6TH94), NSRR_PECAS  (Q6D125), NSRR_PECCP  (C6DE26), 
NSRR_PHOLL  (Q7MYU4), NSRR_PHOPR  (Q6LM38), NSRR_SHIB3  (B2TY53), 
NSRR_SHIBS  (Q31TA8), NSRR_SHIDS  (Q328F7), NSRR_SHIF8  (Q0SXA4), 
NSRR_SHIFL  (P0AF66), NSRR_SHISS  (Q3YUG5), NSRR_SHOC1  (Q5WL64), 
NSRR_VIBC1  (A7MX86), NSRR_VIBPA  (P40610), NSRR_YERE8  (A1JIS1), 
NSRR_YERP3  (A7FMX3), NSRR_YERPA  (Q1C106), NSRR_YERPE  (Q0WJT1), 
NSRR_YERPN  (Q1CEG1), NSRR_YERPS  (Q66FA9), RRF2_NITV2  (P33395), 
Y1287_MYCTO (P9WME2), Y1287_MYCTU (P9WME3), Y1318_MYCBO (P67160), 
Y1378_NEIMB (P0A0Z0), Y1593_NEIMA (P0A0Y9), Y2142_RHOCB (O68025), 
Y268_AQUAE  (O66625), Y379_HAEIN  (P44675), Y846_SYNY3  (Q55433), 
YFFB_LACLA  (Q48660), YOR2_AZOVI  (O69219), YWGB_BACSU  (P71047)
» more

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

ISCR_SODGM  (Q2NS30), NSRR_ALISL  (B6EMP9), NSRR_OCEIH  (Q8ETG9), 
NSRR_PROMH  (B4F272), NSRR_SALA4  (B5F393), NSRR_SALCH  (Q57GL3), 
NSRR_SALEP  (B5R0P4), NSRR_SALG2  (B5R9C4), NSRR_SALHS  (B4TFB2), 
NSRR_SALPA  (Q5PL57), NSRR_SALPB  (A9N4Z2), NSRR_SALPK  (B5BKI6), 
NSRR_SALSV  (B4TSF8), NSRR_SALTI  (Q8Z183), NSRR_SALTY  (Q8ZKA3), 
NSRR_SERP5  (A8G8V5), NSRR_STRCO  (Q9L132), NSRR_VIBVU  (Q8DCU1), 
NSRR_VIBVY  (Q7MH10), YWNA_BACSU  (P71036)
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

Y241_METJA  (Q57693)

		
PDB
[Detailed view]
4 PDB

2Y75; 4HF0; 4HF1; 4HF2