PROSITE entry PS01332
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General information about the entry
| Entry name [info] | HTH_RRF2_1 |
| Accession [info] | PS01332 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUL-1999 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC01035 |
Name and characterization of the entry
| Description [info] | Rrf2-type HTH domain signature. |
| Pattern [info] |
L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF]. |
Numerical results [info]
| Total number of hits | 139 in 139 different sequences |
| Number of true positive hits | 138 in 138 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 20 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.28 % |
| Recall (true positives / (true positives + false negatives)) | 87.34 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
138 sequences
AAU3_RHIME (Q9R9M8), BADM_RHOPA (O07465), CYMR_BACSU (O34527), ISCR_ALISL (B6EGX4), ISCR_CERS4 (Q3J0R9), ISCR_CITK8 (A8AD51), ISCR_CROS8 (A7MGX6), ISCR_ECO24 (A7ZPX5), ISCR_ECO27 (B7UGX7), ISCR_ECO45 (B7MIM1), ISCR_ECO55 (B7LDC3), ISCR_ECO57 (P0AGL0), ISCR_ECO5E (B5Z105), ISCR_ECO7I (B7NRI0), ISCR_ECO81 (B7MYG4), ISCR_ECO8A (B7M7N4), ISCR_ECOBW (C4ZXA6), ISCR_ECODH (B1XB06), ISCR_ECOHS (A8A337), ISCR_ECOK1 (A1AE68), ISCR_ECOL5 (Q0TEV4), ISCR_ECOL6 (P0AGK9), ISCR_ECOLC (B1IWD0), ISCR_ECOLI (P0AGK8), ISCR_ECOLU (B7N6B8), ISCR_ECOSE (B6I5A3), ISCR_ECOSM (B1LNI7), ISCR_ECOUT (Q1R8K1), ISCR_EDWI9 (C5BEU6), ISCR_ENT38 (A4WDB2), ISCR_ERWT9 (B2VI31), ISCR_ESCF3 (B7LJQ3), ISCR_KLEP3 (B5XNJ6), ISCR_KLEP7 (A6TCF2), ISCR_PECAS (Q6D258), ISCR_PECCP (C6DBJ2), ISCR_PHOLL (Q7N223), ISCR_PHOPR (Q6LU63), ISCR_SALA4 (B5F1C1), ISCR_SALAR (A9MHJ3), ISCR_SALCH (Q57LG8), ISCR_SALDC (B5FR87), ISCR_SALEP (B5R5A3), ISCR_SALG2 (B5RD13), ISCR_SALHS (B4TDB7), ISCR_SALNS (B4T1C0), ISCR_SALPA (Q5PNG2), ISCR_SALPB (A9N1X3), ISCR_SALPC (C0PYK6), ISCR_SALPK (B5BAW5), ISCR_SALSV (B4TRX7), ISCR_SALTI (Q8XF25), ISCR_SALTY (Q7CQ10), ISCR_SERP5 (A8GHY4), ISCR_SHIB3 (B2TXV6), ISCR_SHIBS (Q31XV9), ISCR_SHIDS (Q32D33), ISCR_SHIF8 (Q0T1Y8), ISCR_SHIFL (P0AGL1), ISCR_SHISS (Q3YZ21), ISCR_VIBA3 (B7VJS5), ISCR_VIBC1 (A7MU47), ISCR_VIBCH (Q9KTY3), ISCR_VIBPA (Q87S29), ISCR_VIBVU (Q8DEY6), ISCR_VIBVY (Q7MNG3), ISCR_XENNA (Q8GLE9), ISCR_YERE8 (A1JKQ1), ISCR_YERP3 (A7FFX0), ISCR_YERPA (Q1C5G9), ISCR_YERPE (Q0WD07), ISCR_YERPG (A9R819), ISCR_YERPN (Q1CKB0), ISCR_YERPP (A4TMV5), ISCR_YERPS (Q667Y0), NSRR_ALIF1 (Q5E2D6), NSRR_ALIFM (B5FBQ6), NSRR_BACLD (Q65M01), NSRR_BACSU (O07573), NSRR_ECO24 (A7ZV48), NSRR_ECO27 (B7UQI7), NSRR_ECO45 (B7MLI3), NSRR_ECO55 (B7LC37), NSRR_ECO57 (P0AF65), NSRR_ECO5E (B5Z2I4), NSRR_ECO7I (B7NTN4), NSRR_ECO81 (B7MSJ6), NSRR_ECO8A (B7M8T8), NSRR_ECOBW (C4ZR55), NSRR_ECODH (B1XDS9), NSRR_ECOHS (A8A7S3), NSRR_ECOK1 (A1AJ83), NSRR_ECOL5 (Q0T9L5), NSRR_ECOL6 (P0AF64), NSRR_ECOLC (B1IT28), NSRR_ECOLI (P0AF63), NSRR_ECOLU (B7NGB2), NSRR_ECOSE (B6I282), NSRR_ECOSM (B1LQJ8), NSRR_ECOUT (Q1R382), NSRR_ENT38 (A4W5R9), NSRR_ESCF3 (B7LLW0), NSRR_GEOKA (Q5KZ63), NSRR_HALH5 (Q9RC41), NSRR_KLEP3 (B5Y324), NSRR_KLEP7 (A6TH94), NSRR_PECAS (Q6D125), NSRR_PECCP (C6DE26), NSRR_PHOLL (Q7MYU4), NSRR_PHOPR (Q6LM38), NSRR_SHIB3 (B2TY53), NSRR_SHIBS (Q31TA8), NSRR_SHIDS (Q328F7), NSRR_SHIF8 (Q0SXA4), NSRR_SHIFL (P0AF66), NSRR_SHISS (Q3YUG5), NSRR_SHOC1 (Q5WL64), NSRR_VIBC1 (A7MX86), NSRR_VIBPA (P40610), NSRR_YERE8 (A1JIS1), NSRR_YERP3 (A7FMX3), NSRR_YERPA (Q1C106), NSRR_YERPE (Q0WJT1), NSRR_YERPN (Q1CEG1), NSRR_YERPS (Q66FA9), RRF2_NITV2 (P33395), Y1287_MYCTO (P9WME2), Y1287_MYCTU (P9WME3), Y1318_MYCBO (P67160), Y1378_NEIMB (P0A0Z0), Y1593_NEIMA (P0A0Y9), Y2142_RHOCB (O68025), Y268_AQUAE (O66625), Y379_HAEIN (P44675), Y846_SYNY3 (Q55433), YFFB_LACLA (Q48660), YOR2_AZOVI (O69219), YWGB_BACSU (P71047)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
20 sequences
ISCR_SODGM (Q2NS30), NSRR_ALISL (B6EMP9), NSRR_OCEIH (Q8ETG9), NSRR_PROMH (B4F272), NSRR_SALA4 (B5F393), NSRR_SALCH (Q57GL3), NSRR_SALEP (B5R0P4), NSRR_SALG2 (B5R9C4), NSRR_SALHS (B4TFB2), NSRR_SALPA (Q5PL57), NSRR_SALPB (A9N4Z2), NSRR_SALPK (B5BKI6), NSRR_SALSV (B4TSF8), NSRR_SALTI (Q8Z183), NSRR_SALTY (Q8ZKA3), NSRR_SERP5 (A8G8V5), NSRR_STRCO (Q9L132), NSRR_VIBVU (Q8DCU1), NSRR_VIBVY (Q7MH10), YWNA_BACSU (P71036)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
Y241_METJA (Q57693) |
| PDB [Detailed view] |
4 PDB
2Y75; 4HF0; 4HF1; 4HF2 |