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| Entry: PS50174 |
General information about the entry
| Entry name [info] | G_PATCH |
| Accession [info] | PS50174 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2002 CREATED;
10-MAY-2017 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50174 |
| Associated ProRule [info] | PRU00092 |
Name and characterization of the entry
| Description [info] | G-patch domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=47; /DISJOINT: DEFINITION=PROTECT; N1=5; N2=43; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0889000; R2=0.0170978; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1365.4576416; R2=4.1952276; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=434; H_SCORE=3186; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=317; H_SCORE=2695; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-9; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='T'; M= -4, -4,-23, -4, -2,-19,-12,-11,-13, -5,-15,-10, -5, -2, -4, -9, 2, 5,-10,-26,-12, -4; /M: SY='E'; M= -6, 8,-23, 9, 10,-25, -2, -4,-24, 2,-23,-13, 9,-12, 5, 1, 8, -2,-20,-31,-18, 7; /M: SY='N'; M= -5, 11,-24, 6, -3,-24, 7, -7,-25, -4,-28,-19, 19, -3, -5, -5, 8, 0,-24,-32,-22, -5; /M: SY='I'; M= -8,-23,-23,-27,-20, 1,-30,-23, 16,-15, 6, 6,-19,-11,-18,-14,-13, -3, 15,-21, -4,-21; /M: SY='G'; M= 8,-10,-24,-11,-15,-25, 43,-19,-28,-17,-23,-16, -3,-18,-17,-19, 4,-12,-17,-23,-26,-16; /M: SY='H'; M= -9, -8,-23,-11, -6, -5,-14, 10,-13, -7,-10, -2, -3,-19, -1, -4, -5, -5,-12,-17, 5, -4; /M: SY='K'; M= -5, -2,-20, -3, 6,-28,-17, -7,-26, 25,-24,-10, -1,-13, 13, 23, -4, -8,-19,-23,-13, 8; /M: SY='M'; M= -9,-24,-20,-29,-20, 5,-26,-13, 19,-20, 28, 31,-23,-24,-11,-16,-21, -9, 11,-20, 0,-15; /M: SY='L'; M=-10,-25,-20,-29,-18, 4,-26,-11, 18,-20, 35, 35,-25,-25, -8,-15,-25,-10, 8,-20, 0,-13; /M: SY='Q'; M= -3, -7,-19, -7, 7,-20,-19, -8,-12, -2, -6, -2, -8,-11, 9, -1, -5, -5,-11,-25,-13, 7; /M: SY='K'; M= -1, 2,-24, 0, 4,-27, -9, -9,-26, 23,-26,-13, 4,-12, 5, 15, 2, -3,-18,-25,-14, 4; /M: SY='M'; M=-10,-17,-16,-24,-16, 0,-18, -2, 6,-10, 8, 31,-15,-21, 0, -8,-13, -6, 0,-16, 4, -9; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='W'; M=-20,-34,-43,-35,-27, 18,-23,-18,-13,-19,-11,-13,-34,-30,-19,-18,-34,-24,-22,109, 40,-20; /M: SY='K'; M= -9, -5,-26, -5, 5,-20,-19, -8,-21, 23,-19, -9, -2,-13, 5, 23, -3, -1,-14,-22, -8, 3; /I: I=-6; MD=-32; /M: SY='E'; M= -7, -4,-30, 4, 25,-27,-15, -9,-22, 2,-21,-16, -8, 24, 6, -7, -4, -9,-23,-27,-21, 14; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='G'; M= 0, -7,-29, -7,-16,-29, 61,-18,-38,-18,-30,-20, 3,-19,-17,-18, 2,-17,-29,-22,-29,-16; /M: SY='Q'; M=-10, 0,-27, 0, 12,-27,-14, 1,-21, 11,-18, -2, -1,-11, 20, 8, -3, -6,-20,-24,-11, 16; /M: SY='G'; M= 0,-10,-29,-10,-20,-29, 66,-20,-39,-20,-29,-20, 0,-20,-20,-20, 1,-17,-29,-20,-29,-20; /M: SY='L'; M=-10,-30,-21,-31,-21, 9,-31,-21, 24,-30, 46, 20,-29,-29,-20,-21,-29,-10, 13,-20, 0,-21; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='K'; M= -6, -9,-24, -9, -1,-17,-19, -6,-15, 14,-12, -5, -6,-13, 2, 11, -6, -5,-11,-21, -5, -1; /M: SY='N'; M= -4, 6,-23, 3, 4,-24, -7, 4,-23, 5,-23,-13, 12,-11, 6, 5, 5, -4,-21,-29,-14, 4; /M: SY='E'; M= -5, 2,-23, 3, 15,-24, -2, 3,-27, -1,-21,-15, 5, -8, 3, -1, 1, -9,-24,-29,-17, 8; /M: SY='Q'; M=-10, 5,-27, 7, 13,-31,-17, 1,-19, 8,-20, -6, 3, -7, 26, 4, -1, -7,-21,-26,-13, 19; /I: I=-6; MI=0; MD=-32; IM=0; DM=-32; /M: SY='G'; M= 1, -6,-29, -7,-13,-29, 53,-17,-37,-13,-29,-19, 2,-18,-15,-15, 0,-17,-28,-21,-27,-14; /M: SY='I'; M=-10,-15,-26,-20,-15, -9,-28,-14, 18,-17, 8, 10,-10,-19, -6,-13,-12, -8, 7,-24, -4,-13; /M: SY='K'; M= 2,-10,-21,-13, -7,-17,-18,-15, -6, 3,-11, -5, -7, -9, -5, 1, -2, -1, -1,-25,-13, -7; /M: SY='B'; M= -8, 10,-23, 9, 8,-20,-15, 2,-18, -2,-16,-11, 9,-13, 5, -4, 3, 1,-17,-30,-11, 6; /M: SY='P'; M= -2,-15,-31,-10, -2,-26,-16,-18,-16, -6,-25,-16,-12, 49, -7,-13, -1, -4,-20,-29,-24, -8; /M: SY='I'; M= -9,-25,-23,-28,-20, 0,-31,-18, 24,-21, 16, 11,-19,-23,-17,-16,-16, -7, 19,-23, -2,-21; /M: SY='E'; M= -4, -3,-26, -2, 8,-24,-12, -4,-18, 5,-16, -7, -2, -5, 6, 2, -3, -8,-17,-25,-14, 6; /M: SY='A'; M= 11,-16,-11,-20,-17,-10, -9,-20, -2,-12, -3, -3,-15,-20,-16,-15, -1, 1, 8,-22,-10,-17; /M: SY='E'; M= -8, -3,-28, -2, 14,-22,-11, -6,-18, 8,-18,-10, -3,-11, 4, 2, -4, -8,-16,-24,-11, 8; /M: SY='V'; M= -2,-11,-21,-12,-10,-15,-14,-18, 1, -8, -6, -2, -9,-18, -9,-12, -2, -3, 5,-27,-12,-11; /M: SY='R'; M= -8, -2,-17, -7, -3,-17,-17, -9,-14, 3,-16, -9, 4,-18, 2, 6, 0, 0,-12,-20,-11, -1; /I: I=-4; MI=0; MD=-22; IM=0; DM=-22; /M: SY='D'; M= -6, 2,-23, 3, 3,-22,-13, -6,-18, 1,-15, -8, 0,-10, 2, 0, 1, 1,-13,-28,-13, 2; /M: SY='K'; M= -3, 8,-24, 9, 4,-24, -5, -7,-27, 10,-24,-16, 8,-13, 1, 7, 1, -6,-20,-26,-15, 2; /M: SY='R'; M=-13, -2,-28, -5, -3,-21, -5, -3,-25, 13,-22,-11, 7,-19, 6, 26, -6,-10,-21,-16,-10, 0; /M: SY='K'; M= 0, -9,-23, -9, 1,-15, -8,-13,-18, 3,-14,-10, -7, -9, -4, 3, -3, -4,-12,-22,-13, -2; /M: SY='G'; M= 1, -4,-27, -3,-11,-29, 50,-17,-36,-16,-29,-20, 2,-17,-14,-17, 6,-13,-26,-24,-27,-13; /M: SY='L'; M= -9,-25,-20,-28,-20, 12,-29,-21, 14,-20, 22, 10,-22,-26,-20,-13,-18, -5, 13,-18, 1,-20; /M: SY='G'; M= -4, -5,-30, -3,-10,-28, 42,-16,-32,-12,-25,-17, 0,-18,-13,-12, -2,-17,-25,-22,-25,-12; /M: SY='A'; M= 8,-13,-14,-19,-11, -5,-17, -7, -5,-11, -6, -4,-11,-19, -8,-14, -6, -7, -3, -9, 3,-10; /M: SY='S'; M= 0, -2,-22, -2, -1,-13, -6,-10,-18, -3,-17,-13, 0,-12, -5, -5, 2, -4,-12,-23,-11, -3; /M: M= -2,-10,-23,-11, -5,-15, -1,-14,-16, 0, -9, -4, -7,-17, -7, -3, -5, -8,-11,-22,-13, -6; /M: SY='P'; M= -8, -2,-27, 2, 8,-23,-17,-10,-18, 4,-19,-11, -4, 9, 1, -1, 0, -2,-17,-29,-17, 3; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 201 in 201 different sequences |
| Number of true positive hits | 201 in 201 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 99.01 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | K_Hofmann, CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | G-patch |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
201 sequences
AGGF1_HUMAN (Q8N302 ), AGGF1_MOUSE (Q7TN31 ), C3H18_ORYSJ (Q6K687 ), C3H22_ARATH (Q9SK49 ), CHERP_HUMAN (Q8IWX8 ), CHERP_MOUSE (Q8CGZ0 ), CMTR1_AILME (D2HRF1 ), CMTR1_BOVIN (A2VE39 ), CMTR1_DANRE (Q803R5 ), CMTR1_DROME (Q9W4N2 ), CMTR1_HUMAN (Q8N1G2 ), CMTR1_MOUSE (Q9DBC3 ), CMTR1_PONAB (Q5R981 ), CMTR1_RAT (Q5U2Z5 ), CMTR1_XENLA (Q6GQ76 ), DR111_ARATH (P42698 ), GAG_IPMA (P11365 ), GPAN1_CAEEL (Q09655 ), GPAN1_DROME (Q9V7A7 ), GPAN1_HUMAN (O95872 ), GPAN1_MOUSE (Q61858 ), GPDP1_ARATH (Q940M0 ), GPKOW_CAEEL (Q21924 ), GPKOW_DANRE (Q90X38 ), GPKOW_HUMAN (Q92917 ), GPKOW_MOUSE (Q56A08 ), GPKOW_XENLA (Q6NU07 ), GPT11_BOVIN (Q2KI19 ), GPT11_DANRE (Q6DGZ0 ), GPT11_HUMAN (Q8N954 ), GPT11_MOUSE (Q3UFS4 ), GPT11_XENTR (Q6DF57 ), GPTC1_BOVIN (Q24K12 ), GPTC1_CAEEL (Q21827 ), GPTC1_DROME (Q9VUA0 ), GPTC1_HUMAN (Q9BRR8 ), GPTC1_MOUSE (Q9DBM1 ), GPTC2_HUMAN (Q9NW75 ), GPTC2_MOUSE (Q7TQC7 ), GPTC3_HUMAN (Q96I76 ), GPTC3_MOUSE (Q8BIY1 ), GPTC4_BOVIN (Q2KJE1 ), GPTC4_HUMAN (Q5T3I0 ), GPTC4_MOUSE (Q3TFK5 ), GPTC4_RAT (Q566R3 ), GPTC4_XENLA (Q4V842 ), GPTC4_XENTR (Q6P859 ), GPTC8_HUMAN (Q9UKJ3 ), GPTC8_MOUSE (A2A6A1 ), MOS2_ARATH (Q9C801 ), MTR1A_CAEBR (A8XYX2 ), MTR1B_CAEBR (A8XYX3 ), MTR1_CAEEL (Q9NAA5 ), MTR1_DICDI (Q54WR1 ), NKRF_HUMAN (O15226 ), NKRF_MOUSE (Q8BY02 ), PINX1_HUMAN (Q96BK5 ), PINX1_MOUSE (Q9CZX5 ), PINX1_RAT (A4L691 ), POK9_HUMAN (P63128 ), POL_JSRV (P31623 ), POL_MPMV (P07572 ), POL_SMRVH (P03364 ), POL_SRV1 (P04025 ), POL_SRV2 (P51517 ), PRO_JSRV (P31625 ), PRO_MPMV (P07570 ), PRO_SMRVH (P21407 ), PRO_SRV1 (P04024 ), PRO_SRV2 (P51518 ), PXR1_AJECN (A6R371 ), PXR1_ASHGO (Q751P0 ), PXR1_ASPCL (A1CD56 ), PXR1_ASPFU (Q4WG40 ), PXR1_ASPNC (A2R156 ), PXR1_ASPOR (Q2UDW7 ), PXR1_ASPTN (Q0CU52 ), PXR1_BOTFB (A6RIE1 ), PXR1_CANAL (Q5A660 ), PXR1_CANGB (Q6FTR8 ), PXR1_CHAGB (Q2HFA6 ), PXR1_COCIM (Q1DQE9 ), PXR1_DEBHA (Q6BUE3 ), PXR1_KLULC (Q6CTA7 ), PXR1_LODEL (A5E4P1 ), PXR1_MAGO7 (A4R0T9 ), PXR1_NEOFI (A1DC33 ), PXR1_NEUCR (Q7SHT5 ), PXR1_PHANO (Q0UWF6 ), PXR1_PICGU (A5DRH5 ), PXR1_SCHPO (Q9URX9 ), PXR1_SCLS1 (A7EFS3 ), PXR1_VANPO (A7TG30 ), PXR1_YARLI (Q6C1L3 ), PXR1_YEAS7 (A6ZUT6 ), PXR1_YEAST (P53335 ), RBM10_HUMAN (P98175 ), RBM10_MOUSE (Q99KG3 ), RBM10_RAT (P70501 ), RBM5A_XENLA (A0JMV4 ), RBM5B_XENLA (Q6DDU9 ), RBM5_BOVIN (Q1RMU5 ), RBM5_HUMAN (P52756 ), RBM5_MOUSE (Q91YE7 ), RBM5_RAT (B2GV05 ), RBM5_XENTR (A4IGK4 ), RBM6_HUMAN (P78332 ), SON_DROME (Q9VHB0 ), SON_HUMAN (P18583 ), SON_MOUSE (Q9QX47 ), SP382_YEAST (Q06411 ), SPF45_HUMAN (Q96I25 ), SPF45_MOUSE (Q8JZX4 ), SPP2_ASPFU (Q4WP02 ), SPP2_EMENI (Q5B4R9 ), SPP2_USTMA (Q4P9X4 ), SQS1_ASHGO (Q75E62 ), SQS1_CANAL (Q59UG4 ), SQS1_CANGB (Q6FP19 ), SQS1_DEBHA (Q6BYP9 ), SQS1_KLULC (Q6CQ59 ), SQS1_LODEL (A5DSB5 ), SQS1_PICGU (A5DEF8 ), SQS1_PODAS (Q875B6 ), SQS1_VANPO (A7TQN2 ), SQS1_YARLI (Q6C233 ), SQS1_YEAS7 (A6ZRL6 ), SQS1_YEAST (P53866 ), STIP1_ARATH (Q9SHG6 ), STIP2_ARATH (Q9SLC6 ), SUA_ARATH (F4JCU0 ), SUGP1_ARATH (Q94C11 ), SUGP1_HUMAN (Q8IWZ8 ), SUGP1_MOUSE (Q8CH02 ), SUGP1_RAT (Q68FU8 ), SUGP2_HUMAN (Q8IX01 ), SUGP2_MOUSE (Q8CH09 ), TFP11_BOVIN (Q29RR5 ), TFP11_CAEEL (Q17784 ), TFP11_CANLF (A1XD97 ), TFP11_CHICK (Q5ZII9 ), TFP11_DANRE (Q6DI35 ), TFP11_DICDI (A1XDC0 ), TFP11_DROME (Q9Y103 ), TFP11_HUMAN (Q9UBB9 ), TFP11_MACFA (A1XD95 ), TFP11_MACMU (A1XD94 ), TFP11_MONDO (A4UMC6 ), TFP11_MOUSE (Q9ERA6 ), TFP11_PANTR (A1XD93 ), TFP11_PIG (Q06AK6 ), TFP11_PONAB (Q5R5K8 ), TFP11_RABIT (A4UMC5 ), TFP11_RAT (Q5U2Y6 ), TFP11_XENLA (Q66J74 ), TFP11_XENTR (Q0IIX9 ), TGHH_ORYSI (B8B2G4 ), TGHH_ORYSJ (Q67VW6 ), VP113_HUMAN (P63121 ), VPK04_HUMAN (P63124 ), VPK10_HUMAN (P10265 ), VPK18_HUMAN (P63123 ), VPK19_HUMAN (P63120 ), VPK21_HUMAN (P63119 ), VPK24_HUMAN (P63129 ), VPK25_HUMAN (P63125 ), VPK6_HUMAN (Q9Y6I0 ), VPK7_HUMAN (P63131 ), VPK8_HUMAN (P63122 ), VPK9_HUMAN (P63127 ), Y5282_DICDI (Q54XG0 ), YAB4_SCHPO (Q09806 ), YDMD_SCHPO (P87143 ), YG0G_SCHPO (O94728 ), YKR3_SCHPO (Q9UTK6 ), YL271_YEAST (Q06152 ), YND2_SCHPO (O74363 ), YQ7D_SCHPO (O94585 ), ZGPAT_AEDAE (Q17CQ8 ), ZGPAT_ANOGA (Q7PYU6 ), ZGPAT_BOVIN (Q17QX2 ), ZGPAT_DANRE (Q7SXW2 ), ZGPAT_DROAN (B3MPC0 ), ZGPAT_DROER (B3N8L3 ), ZGPAT_DROGR (B4JCG4 ), ZGPAT_DROME (Q9VL59 ), ZGPAT_DROMO (B4KH32 ), ZGPAT_DROPE (B4G7U3 ), ZGPAT_DROPS (Q29NF3 ), ZGPAT_DROSE (B4HWD7 ), ZGPAT_DROSI (B4Q8A7 ), ZGPAT_DROVI (B4M9F7 ), ZGPAT_DROYA (B4NYQ2 ), ZGPAT_HUMAN (Q8N5A5 ), ZGPAT_MOUSE (Q8VDM1 ), ZGPAT_NEMVE (A7SBN6 ), ZGPAT_RAT (Q5PPF5 ), ZGPAT_SALSA (C0HAV3 ), ZGPAT_SHEEP (C5IJB0 ), ZGPAT_XENLA (Q5U4Z3 ), ZGPAT_XENTR (Q28H71 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
SPP2_YEAST (Q02521 ), TGH_ARATH (Q8GXN9 ) |
| PDB [Detailed view] |
4 PDB
5Y88; 6SH6; 6SH7; 7DVQ |
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