PROSITE entry PS50236
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General information about the entry
| Entry name [info] | CHCR |
| Accession [info] | PS50236 |
| Entry type [info] | MATRIX |
| Date [info] |
01-APR-2013 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50236 |
| Associated ProRule [info] | PRU01006 |
Name and characterization of the entry
| Description [info] | Clathrin heavy-chain (CHCR) repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=145; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=145; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.1964588; R2=0.0082106; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=26325.6777344; R2=3.5400355; PRIORITY=1; TEXT='Heuristic 0.1%'; /CUT_OFF: LEVEL=0; SCORE=951; H_SCORE=29692; N_SCORE=10.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=525; H_SCORE=28184; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-42; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='Y'; M= -7, -39, -45,-129, 33, -40,-121, 16, -33, 54, -27, -18,-139, -18, 2, -73,-121, -14,-120, 62; /M: SY='I'; M= -53,-134, -4, -37, -7,-130, 2, 48, -9, -3, 44, 29, 42, 9, -15, 8, 9, -38,-137,-119; /M: SY='E'; M= -32, -24, -15, 57, -44, -64,-119, -4, 20, -7, -21, -15, -49, 36, 24, 15, -52, 6,-136, -32; /M: SY='L'; M= 8, -18, 2, -35, -6, -13, -21, -7,-125, 35,-109, -5,-132, -15,-128, 18, 30, 18,-132, 27; /M: SY='S'; M= -25, -39, 31, 23,-126, -15, 25, 21, -19, 2,-116, -24,-129, -20, 22, 31, 6, 8,-141,-123; /M: SY='D'; M= -35, -15, 66, 16,-140, 19, 51,-139, -24, -60,-129, 8, 59, 26,-120, 11,-117,-137,-145,-128; /M: SY='Q'; M= 11,-136,-123, -42, -42, -75,-118,-122, 4, 5, -2, -4, 51, 61, 50, -16, -24, -28, 6, -6; /M: SY='I'; M= -13, 0, 9, 24, 1, -46,-126, 40, -71, 33, -44, -49,-131, 16, -54, 21, -21, 9,-136,-119; /M: SY='D'; M= -22,-137, 78, 50,-140, 3, -2,-138,-114, -49,-131, 18, 38, -19,-122, 15, -10,-134,-147,-130; /M: SY='H'; M= -26,-133,-128,-125, -34, -69, 47, 39, -54, 2,-110, -27, 41, -40, -31, 30, 11, 23,-131, 41; /M: SY='S'; M= -39,-132, 23, 49, -18,-124,-119, -26, -77, -9, -11, 11, 25, 13, -47, 57, 10, -33,-140,-124; /M: SY='E'; M= 17,-135, -13, 66,-130, -70,-116, -71, 18, -51,-124, 11, 8, 11, 28, -12, -17, -37, -22, 21; /M: SY='V'; M= -14, 13,-137,-132, -44, -65, -20, 40,-130, 40,-103,-131, 17,-130, -41, -24, 16, 57,-139,-120; /M: SY='V'; M= -65, -20, 9,-131,-114, -75,-136, 65, -56, -37, -5,-128,-134,-130,-133, -3, -17, 75,-139, -8; /M: SY='D'; M= -24, 10, 55, 35, -28,-127, 7,-133, 42, -56, -22, 34, -21, -12, 27, -15, -2, -62,-142,-125; /M: SY='Y'; M= 13, -41,-127, 13, -7,-135,-123, 38, 4, 18, 5, -40,-133, 28, -1, -74, -50, 25,-127, 39; /M: SY='F'; M= 4, 3,-139,-135, 92,-136,-123, 12, -57, -13, 24,-132,-140,-132, -46, -17,-121, 3,-111, 60; /M: SY='E'; M= -69,-133,-113, 65, -49, -25, -20, -35,-113, 17, 65, 4,-126, 30, -22, 42, -52, -60,-136, -34; /M: SY='K'; M= -32, -5, 38, 32, -36, -47, 5, -59, 53, -72, -30, 7,-126, 23, -13, 32, 1, -60,-137, -8; /I: I=-21; MI=0; MD=-53; IM=0; DM=-53; /M: SY='R'; M= 39, -2,-123, -21, 20, -67, -20,-123, 14, -42, -29, -5, 3, 2, 55, -3, -7, -7,-133, -19; D=-21; /I: I=-21; DM=-53; /M: SY='N'; M=-119,-135, 46, 1, -15, 36,-114, -59, 38,-136,-128, 72,-128, 39, -32, -16,-116, -58,-139, -32; /M: SY='Y'; M= -54, -7, -45, 1, 0,-130, 38,-120, -18, 22, 9, 27, -41, 43, 33, 17, -61, -50, 3, 46; /M: SY='Y'; M=-126,-137,-132, -9, 31,-138,-124, 40, -4, 29, -19,-131, 55,-124, -15, -60, -33, -18, 40, 56; /M: SY='E'; M= -76,-138, -9, 57,-134, -75, 31,-135, 50, -53,-124, 41, 19, 41, 23, -34,-118, -63,-136, 3; /M: SY='E'; M= -11,-135, 16, 68, -54, 0,-118, -41, -53, 36,-114, 0, -61, 44,-119,-118, -46, -60,-133, 8; /M: SY='L'; M= 11, 14,-136,-130, -43, -68,-127, -20,-130, 77, -97, -35,-138, 16,-130, -29, -11, -2,-133, -32; /M: SY='I'; M= -34, -16,-132,-127, 8,-137, 1, 63, 21, 14,-105, -61,-132, -8,-123, -55, 45, 13,-130, 22; /M: SY='P'; M= 17, 5, -46, 17, -41,-126, -42, -13, 20, -25,-120, -18, 55, -6, 25, 26, -29, -31,-133, 15; /M: SY='Y'; M=-131,-137,-136, -55, 68,-140,-109,-110,-130, 25, -37,-135,-143,-127,-128,-130,-126,-116, 49, 117; /M: SY='L'; M=-127,-129,-145,-136, -1,-145,-127, -50,-137, 92, 61,-142,-142,-130,-134,-136,-123,-100,-129,-111; /M: SY='E'; M= -73,-137, -41, 89, -47, -18, 17, -30, -49, 11,-118,-119,-124, 29, -1, -79, -18, -13, 5,-123; /M: SY='H'; M= 29, -16, 16, -35, 9,-123, 59,-125, 43, -69, 51, -47,-128, 7,-112, 46, -50, -53, 6, -28; /M: SY='L'; M= 32, 35,-137,-132, -51, -16,-131, 39, -74, 44, 19,-131,-136, -21, -30, -68,-118, 35,-134, -28; /M: SY='V'; M= -56,-132,-134,-127, 6, -65, 35, 28,-122, 40, -1,-128,-136, 31, 20, -17, -45, 51,-134, -32; /M: SY='K'; M= -32,-133, 1, 2,-129, 5, 28, -48, 46, 3,-120, 42, -19, 8, -23, 35, -54, -41,-137, -11; /M: SY='E'; M= -60,-133, 16, 33, -19, -30, 1, -32, 32, 5, -40, 28, -24, 19, -12, -33, 17, 14,-138, -32; /I: I=-28; MD=-70; /M: SY='N'; M=-132,-148, 16, 12, -46, 21, -21,-140, -20, -21,-136, 52, -9, -16, -36, -12,-129, -19, 15,-138; D=-28; /I: I=-28; MD=-70; /M: SY='R'; M= -60,-160, -31, -46,-157, -35, 1, -40, -11, -43,-146, 6, -4,-133, 51, 0, -56,-151,-164,-149; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='S'; M= -37, 23, -14, -21, -5,-139, 20, -69, -33, 6, 0, -59, 34,-131,-138, 43, -18, -68,-152,-133; D=-28; /I: I=-28; DM=-70; /M: SY='Q'; M= 29, -17, -12, 50, -46, -59, -34, -35, 1,-128, -31, 37,-125, 55, -9, -7, 22, -24,-140,-126; /M: SY='H'; M= -70,-136, 51, 47, -43, 10, 73, -39, -13, -71,-126, 54, -22, -38, -47, -15, -25, -35,-146,-122; /M: SY='P'; M= 6,-135, -5, 9, -43, -20,-121, -65, 18,-127, 49, -39, 65, 32, -14, 38, -26, -29,-138,-127; /M: SY='H'; M= 39,-133, 26, 36, -28, 8, 57, -55, 0, -59,-123, 27, -26, -50, -11, -22,-117, -20,-137, 0; /M: SY='I'; M=-123,-132,-138, -51, 23,-143, 34, 52,-132, 37, 26,-132,-137, -34,-132,-128, -19, 47,-126, 43; /M: SY='H'; M= -47,-137, -7, -1, 25, -62, 103, -53,-113,-125,-117, 31, -43, 65, -21,-114, 13, -49,-132, 38; /M: SY='N'; M=-118,-129, 27, 13, 2, -38, -26,-127, -50, -39, -21, 77,-126, -42, -42, -3, 73,-124,-142, -21; /M: SY='K'; M= 32, -9,-119, 37, -46,-128, 23, -52, 38, 22, 16,-119,-128, -42, 9, -9, 13, -57, -28, -8; /M: SY='L'; M= -47,-131,-140,-132,-101,-142, -18, -22, -56, 87, -37,-138,-142, 1,-130,-132,-122, -23,-125, 45; /M: SY='I'; M= 33,-130,-134,-133, -22, -31, -31, 69,-131, 46, -17, 24,-135,-128,-134,-123,-118, -7,-134,-118; /M: SY='E'; M=-121, -15, 6, 61, -2, -85, -5, 9, 17, 3,-116, 9,-128, 38,-115, 7,-117, -1,-132, 17; /M: SY='L'; M= 34, 36,-138,-133,-110,-135,-130, 38,-132, 66, 27,-132,-136,-128,-133, -70, 9, -33,-134, -26; /M: SY='Y'; M= 27,-135,-126,-129, -20,-129,-105, -28,-122, -15, 3, 40,-138,-120, -30,-119,-120,-117,-102, 119; /M: SY='A'; M= 61, 43,-134,-128,-119,-127,-132, 54, -29, 30, -48,-127,-132,-125,-130, -2, -8, -21,-137,-123; /I: I=-12; MD=-30; /M: SY='K'; M=-125, -15, 39, 56,-136,-135,-119, -64, 74, -18, -15,-114,-127, -14, 23,-120, -60, -34,-140,-128; D=-12; /I: I=-12; MD=-30; /M: SY='Y'; M= -3,-139, -48, 31, -10, -60, 58, -15, -10, -49, 11, 8,-134, -6, -50, -77, 32, -71,-131, 60; D=-12; /I: I=-12; MI=0; MD=-30; IM=0; DM=-30; /M: SY='D'; M= 3,-135, 76, 33, -49, -26, 6,-138, 29,-136,-130, 2,-126, -25, 16, 16, -22,-133,-141, -7; /M: SY='P'; M= -56,-139, -8, -15,-124,-130, -40, -30, 18, -9,-118, 33, 71, 37, 35, -56, -58, -16,-131, 41; /M: SY='Q'; M= -7,-134, -7, 20, -34,-125,-117, -13, 39, -38,-121, 37, 12, 62, -19, 18, 22,-124,-137, -47; /M: SY='K'; M= -32,-134, -33, 20,-132, -15,-117,-127, 70, -72, -5, 30, -42, -43, 41, 15, -60, 6,-137, -29; /M: SY='L'; M= 14,-130, -75, 17, -43,-134,-126, -30,-127, 59, 53, -41, 30,-123,-130, -55, 3, 16,-136,-119; /M: SY='M'; M=-123,-136, 48, 42, -24,-136, -28, 16, -61, 12, 72,-118,-130, 34, 27, -69, -57, -2,-137, -34; /M: SY='E'; M= 32, -45, 32, 74,-136,-126, 5, -55, -16, -68, 12, -22, 15,-107, 0, -15, -4, -76, -4,-127; /M: SY='F'; M= -71,-135, -41, -44, 81,-136, 48, 26, 14, -43,-112,-123,-136,-122, 15, 9,-121, -77, 8, 64; /M: SY='L'; M=-125,-132,-142, -34, -32,-146,-133, 69,-136, 73, 1,-139,-139,-131,-136,-134, -45, -3,-132,-114; /M: SY='E'; M= -24, 30, 18, 44,-134, -7, -32, -1, 43, -87, -26, 41,-127, -2, 26, -55, 6, -41,-141,-127; /M: SY='N'; M= -21,-133, -21, 4,-127, 4, -2, -9, 25, 14, -36, 54,-130, 9, 42, -1, -16,-122,-137, -30; /M: SY='N'; M= -32,-133, 7, -1, 32, -45, 26, -28, -29, 14, 16, 49, 13, 31,-121, 17, -21, -55,-131, 9; /I: I=-14; MI=0; MD=-36; IM=0; DM=-36; /M: SY='W'; M=-146,-160, -58, -30, 29,-152, -18,-152, -31, -48,-148, 5, -7,-142, -12, 26, -23,-152, 54, -50; D=-14; /I: I=-14; DM=-36; /M: SY='N'; M= -51,-131, 62, -73, -26, -25,-116, -63, -53,-133,-127, 65, 7, 21, -46, 45, 31, -11,-146,-126; /M: SY='H'; M=-123, 44,-117, -53, 7, -59, 94,-122, 4, -18,-116, 62,-134, -16, 16, -40, -21, 11,-137, 25; /M: SY='Y'; M= 10, 11, -29,-132, 58,-135,-110, -17,-129, -18,-110,-130,-141,-126,-127, -53,-122, -37,-100, 116; /M: SY='D'; M=-125,-137, 104, -22,-142, -77, 5,-139, -60,-141,-135, 65, -13, -47, 5, -52, -57, -43,-156,-129; /M: SY='V'; M= 5,-131,-130,-125, -7, -40,-127, 26, -58, 21, 23, -9, 29, 11, 18, 6, -7, 32,-136,-120; /M: SY='P'; M= -14,-138, 46, 44,-133, -37, 9, 8, 3, -14,-121, 13, 50, 26, 2, -45, -57,-124,-140, -36; /M: SY='K'; M= -9,-134, 3, -42, -10, -33, 48, -51, 57, -11,-116, -65,-129, 19, 25, -28, 13, 11,-133, 9; /M: SY='V'; M= 44,-127,-137,-131,-115, -59,-136, 47,-131, 28,-103,-131,-134, -35,-133, -51, -9, 63,-138,-121; /M: SY='A'; M= 46,-131,-132,-128, -17, 41, -23, 29, 9, 36, -28,-124,-133,-123, -18,-117,-120, -50,-130, 4; /M: SY='Q'; M=-121, -9, 36, 32,-140, -40, -35, -59, 48,-135,-126, 34, -6, 60, 45, -14,-117, -43,-140,-127; /M: SY='L'; M= -1,-133, -39, -35, 24,-138,-124, 33, 7, 50,-103,-129,-136, -31, 34,-126,-121, 0,-125, 33; /M: SY='C'; M= 6, 128,-140,-136, -34,-135,-135, -18,-135, 46, -19,-130,-144,-135,-137, -31, -55, -27,-144,-126; /M: SY='E'; M= -59,-137, -17, 68, 3,-132,-116, -8, 16, -17, -17, 3, -32, 47, 2, -10, -50, -18,-131, 16; /M: SY='K'; M= -74,-137, 41, 54, -37, -36,-115,-136, 70,-133, -2, -38,-123, 54, -51, 7, -73, -63,-137,-125; /M: SY='H'; M= 56,-132, -7, -19, -16, -64, 80,-131, -10, -72, -31, 19,-129, -2, 27, 10,-116,-126, 7, 15; /M: SY='G'; M= -53,-137, 53, 15,-140, 56, 28, -57, 35, -80,-129, 43, -61, 28,-114, -29,-119,-136,-142,-128; /I: I=-26; MD=-67; /M: SY='L'; M=-131, 13,-138, -15, 22, -73, 15,-106, -55, 72, 13, -21,-144, -52,-132,-135,-127,-113, 3, 44; D=-26; /I: I=-26; MI=0; MD=-67; IM=0; DM=-67; /M: SY='Y'; M= -76,-138,-130, -65, 19,-135, -17, -59, -7, 22,-112, -24, 47, -16, 24, -56, -15, -12, 75, 78; /M: SY='D'; M= -37, -45, 59, 54,-134,-129, 12, -60, 9, -40, -13, -3, -56, 47, 37, -21, -23,-131,-140, -10; /M: SY='E'; M= 23,-135,-112, 74,-129, -27, -24, 16,-110, 8,-116,-120,-125, 45, 22, -32, -47, -39,-136, -54; /M: SY='A'; M= 77, 7,-128,-122,-125, -67,-126,-115,-121, 24, -17, -40,-130, -19, -3, 23, -12, -10,-137,-126; /M: SY='F'; M= 31, 2,-133, -50, 38,-132,-129, 12, 15, 26,-108,-129, 24,-125, -28, -52, -23, 34,-129, -12; /M: SY='Y'; M= -30,-134,-129, 13, 41,-139, 9, 23, -28, 33,-105, -42,-136, -50, -30,-125, -39, 10,-115, 81; /M: SY='L'; M= -7, -27,-138,-134, -43,-140, 43, 59, -54, 68, -4, -47,-138,-128,-132, -75,-120, -7,-134,-114; /M: SY='Y'; M= -4,-137,-132,-132, 30, -60, 36, -9,-128, 20,-107, -38,-140,-124,-126, -55,-123,-115, 35, 114; /M: SY='K'; M= -15,-132, -1, 35,-132, 16, -51, -14, 46, -68,-122, 2,-125,-111, 7, 7, 37, 16,-140,-127; /M: SY='K'; M= -69, 56, 8, -34, -36, -31, 10, -21, 74, -67,-123, 14,-130, 9, 56, -65,-119, -58,-138,-124; /I: I=-31; MI=0; MD=-79; IM=0; DM=-79; /M: SY='M'; M= -51,-133, -57,-129, 34, 12, 25, 2,-122, 35, 57, 19, -51,-122, 23, -19,-120, -16,-125, 36; /M: SY='Q'; M= -27,-135, 23, 35, 1, 30, -42,-135, 30, -71,-126, 35, -24, 38, -49, 25,-116,-133,-132, 18; /M: SY='N'; M=-123, 36, 54, 30, -55, -55, -23,-126, -4, 13, 9, 69,-131, -41, 25, -25,-116, -47, -23,-125; /M: SY='W'; M= -49,-138, 17,-124, 62,-131, 86, 17,-125,-117, -43, 29, -39,-123,-126, -29, -57,-121, 101, 54; /M: SY='K'; M= 1,-134, 37, 41, -45, -44,-118, -37, 52, -42,-121, 4,-126, 19, -34, -4, -14, 11,-136, -3; /M: SY='Q'; M=-121,-138, 13, 45,-136,-128, 19, -56, 24, -69, -36, 31, -37, 69, 43, 4, -19, -58, 29,-123; /M: SY='A'; M= 73, 9, 11, -64,-122, -57,-127, 1,-125, 20,-113,-122, -35,-122,-129, 15, -65, -3,-134, 8; /M: SY='V'; M= 15,-129,-141,-135,-110,-139,-135, 54,-134, 49, 43,-136,-137,-130,-135, -68, -59, 58,-137,-118; /M: SY='H'; M= -10,-132, 34, 27, -36,-127, 51, -33, 17, -47, -21, 27,-128, -5, -28, 17, 4, 36,-143,-121; /M: SY='H'; M= -87, -33, -17,-129, -55,-138, 53, 35,-129, 37, 18, -9,-134,-127,-130,-121, 39, 51,-137, 6; /M: SY='Y'; M= 5, 49,-133,-130,-107,-134, 18, 15,-129, 53, 43,-127,-135, -39,-129, -5, 28, -63,-127, 55; /M: SY='M'; M=-122,-131,-130,-128,-113, -65, 34, 41, 15, 42, 62, 36,-135, -32,-123,-125,-117, 43,-138,-117; /M: SY='H'; M= -24,-137, 1, 60, -58,-129, 62,-133, 40, -37, -50, 32,-126, 21, -16, -40, -29,-131,-130, 50; /M: SY='H'; M= -59,-135, 38, 31, -18,-130, 67, -11, 8, 22, -22, 46,-130, -5, 11, -54, -44, -25,-141,-118; /I: I=-19; MD=-49; /M: SY='I'; M=-146,-157, 6, -38,-136,-156,-145, 25, -78, 21, 0, 7, 7,-144,-151, -19,-139, -46,-155, 4; D=-19; /I: I=-19; MI=0; MD=-49; IM=0; DM=-49; /M: SY='W'; M= -54, -18, 8, 8, -55, 24, 32, -61, 33, -53, -40, 56, -5, 9, -10, 15, -66, -44, 61,-122; /M: SY='D'; M= -46, -15, 68, 25, -51,-125,-114,-125, -10, 20, 19, 60,-129, 44, -56, 2,-115,-126,-143,-124; /M: SY='Y'; M= -25,-136,-132, -13, 41,-136, 30, 8,-127, 12, 18, -55, -19, -37,-127, -28, -40, -16, 78, 88; /M: SY='Q'; M= -53,-136, 14, 42, -60, -30,-118, -54, 56, 3, -10,-114, -49, 62, 9, -10, -46, -15,-136,-124; /M: SY='K'; M= 16,-135, 24, 17, -47, 0, -30,-125, 40, -38, 25, -35,-128, 40, 37, -10,-118, -6,-135, -21; /M: SY='A'; M= 77, 44,-128, -54, 40, -27,-125,-118,-124, -21,-117, 2,-132, -4,-128, -39, -50, -15,-127, 20; /M: SY='I'; M= 16,-132, -47, 1, 17,-135, -31, 56, 15, -10, 33, -69,-132, -51,-124, -66, -20, 33,-128, 27; /M: SY='D'; M= -44,-138, 71, 66, 8, -45,-116, -13, -11,-131,-128, -36,-125, -11, 34, 10, -46,-129,-140,-123; /M: SY='Y'; M= 1, -34, -46,-130, 46, -2, -1, 15,-126, -45,-112, -64,-135,-125, -52, -31, 27, -8,-110, 97; /M: SY='C'; M= 49, 86,-133,-130, -9,-128,-128, 27, -59, 8,-111, -9, -1,-127, -58, -24, -72, 8,-132, 28; /M: SY='V'; M= -16,-132, -62, 29, -3, -20, -11, -26, 18, 0,-115, 3, -57, -8, 26, 31, -35, 35,-137,-121; /M: SY='K'; M=-119, -45, 23, 33,-135, -86, -30, -65, 59,-133, -5, -20, -9, 41, 30, 32, -32, -58, 50,-123; /M: SY='Q'; M= 16, 42, -6, -15,-126,-128, 23, -67, -3, -4, -18,-119, -50, 44, 26, 25,-115, 39, -5, -34; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='N'; M= 2, -13, 17, 14,-131, -32, -31, -24, -6, -19, -21, 62, 5, 44, 7, 2,-115, -10, 24,-125; /M: SY='D'; M= -18,-134, 73, 0,-135,-121,-114, -54, -7, -45,-127, 64, -12, 5, 10, 28, -29, -39,-145, -35; /M: SY='P'; M= -25,-136, 2, 11, -65, -27, -31, -31, 19, 7, -24,-120, 74, -29, -2, -4, 17, -10,-136, -11; /M: SY='E'; M= -9,-134, 42, 69,-139, -57,-117,-136, 32,-135, -24, -4, -7,-105, 9, 31, 12, -73,-142,-129; /M: SY='L'; M=-122, 61,-133,-131,-110, -55, -41, -4, -22, 66,-101, 9,-139,-126, -9,-125, 18, 21,-135, 4; /M: SY='W'; M= -2, -6,-143,-134, -54, -45,-134, -24,-127, 20, 29, -33,-137,-127, -18, -69, -15, -66, 150, 38; /M: SY='E'; M= -15,-136, -25, 54, -38, -74, -17, -6, 46, -11,-118, -54, 18, 20, -11, 9,-117, -35,-130, 34; /M: SY='Q'; M= -8, -21, 34, 45, -55,-129, 10, -76, 41, -13, -19, -44,-126, 57, 21, -32, 4, -61,-138, -54; /M: SY='V'; M= 16,-129,-140,-134,-107,-137,-129, 20,-132, 54, 43,-135,-137,-129,-133, -52, -46, 57,-131, 32; /M: SY='L'; M= 20, 34,-136,-133, 3, 6,-129, 31,-131, 52, 9, -17,-137,-128, -52, -18,-118, 15,-132, -23; /M: SY='K'; M= -51,-133, -5, -32, 6, 10, 32,-126, 48, -6,-119, 9,-128, 33, 2, 28, 20, -31,-135, -35; /M: SY='Y'; M= 41,-132, -42, -14, 53, -50, 35, -76, -53, -73, -37, -18, -72, 35,-122, -16, -47, -5, 28, 71; /M: SY='C'; M=-122, 60, -50, -29, 42, -19,-119, -46,-125, 40, -16, 29,-137, 34,-126, 10, -69, -12,-124, 46; /M: SY='L'; M= -13,-130,-136,-133, -19,-138,-127, 38, -56, 66, -5, 18,-139,-127, -23, -57,-118, 26,-132, -4; /M: SY='D'; M= -51,-138, 73, 42,-137,-128, 0, -72, -6, -70,-128, -48, -22, 42, 40, 7, 7, -80, 8, -52; /M: SY='K'; M= -4,-135, -42, 33, 13, 14, 10, -27, 43, -20, 6, -3,-128, 42, -43, -38, -56, -11,-129, 17; /M: SY='P'; M=-122,-138, 16, 29, -42, 13, 22, -9, 26, -22, -20, 30, 36, -12, 22, -29, -50,-127,-133, 29; /M: SY='P'; M= -53, 49,-117, 43,-128, -61,-121, -31, 13, 27, -10, 23, 58, -5, 26, -51, -57, -58,-139,-127; /M: SY='Q'; M=-121,-136, 46, -13, 42, -38, 28, -46, -19, -29, 12, -4, -19, 60, -22, 23,-117, -10,-129, 25; /M: SY='E'; M= -33, 21, -17, 44, -26,-136,-124, 38, 4, 19,-111, -43, 27, -37, 14, -36, -29, 2,-134, -4; /M: SY='C'; M= -54, 62, 35, 3, -66, -13,-125, 25, 11, 19,-114,-119, 18, 19, -47, -37, 12, -19, -52, -32; /M: SY='D'; M= 32, -29, 42, -14, 38, -62,-122, -40, -33, -56, -18, 31, -29, 22,-123, -22, 19, 25,-135, -46; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 140 in 51 different sequences |
| Number of true positive hits | 140 in 51 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 3 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.90 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 7 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | REPEAT |
| Feature description [info] | CHCR |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
51 sequences
CLAH1_ARATH (Q0WNJ6), CLAH2_ARATH (Q0WLB5), CLH1_BOVIN (P49951), CLH1_HUMAN (Q00610), CLH1_MOUSE (Q68FD5), CLH1_ORYSJ (Q2RBN7), CLH1_RAT(P11442), CLH2_HUMAN (P53675), CLH2_ORYSJ (Q2QYW2), CLH_CAEEL (P34574), CLH_DICDI (P25870), CLH_DROME (P29742), CLH_SCHPO (Q10161), CLH_YEAST (P22137), PEP3_SCHPO (O74925), PEP3_YEAST (P27801), PEP5L_SCHPO (P87295), PEP5_SCHPO (Q9P6N4), PEP5_YEAST (P12868), TGFA1_BOVIN (A7MB11), TGFA1_DANRE (A4IG72), TGFA1_HUMAN (Q8WUH2), TGFA1_MOUSE (Q3UR70), VAM6_SCHPO (O13955), VAM6_YEAST (Q07468), VPS11_ARATH (Q9SJ40), VPS11_CAEEL (Q09600), VPS11_DICDI (Q54YP4), VPS11_HUMAN (Q9H270), VPS11_MOUSE (Q91W86), VPS18_ARATH (F4IDS7), VPS18_DANRE (P59015), VPS18_DROME (Q24314), VPS18_HUMAN (Q9P253), VPS18_MOUSE (Q8R307), VPS39_DROME (Q9VEA2), VPS39_HUMAN (Q96JC1), VPS39_MOUSE (Q8R5L3), VPS41_ARATH (P93043), VPS41_CAEBR (Q618H8), VPS41_CAEEL (Q19954), VPS41_DANRE (E7F590), VPS41_DROME (Q7PL76), VPS41_HUMAN (P49754), VPS41_MOUSE (Q5KU39), VPS41_SCHPO (Q9P7N3), VPS41_SOLLC (P93231), VPS41_YEAST (P38959), VPS8_DROME (Q9VRX2), VPS8_YEAST (P39702), ZNRF2_PLAF7 (Q8I480)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
3 sequences
VPS39_ARATH (Q8L5Y0), VPS39_CAEEL (Q1ZXS5), VPS3_ARATH (F4I312) |
| PDB [Detailed view] |
10 PDB
1B89; 1XI4; 1XI5; 3IYV; 3LVG; 3LVH; 3QIL; 5ODS; 6WCJ; 7ZU0 |