We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS50330
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PURL: https://purl.expasy.org/prosite/signature/PS50330
Direct ScanProsite submission
General information about the entry
| Entry name [info] | UIM |
| Accession [info] | PS50330 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2003 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50330 |
| Associated ProRule [info] | PRU00213 |
Name and characterization of the entry
| Description [info] | Ubiquitin-interacting motif (UIM) domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=20; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=20; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.2009000; R2=0.0080229; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1468.8551025; R2=0.3444180; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=910; H_SCORE=1782; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=599; H_SCORE=1675; N_SCORE=6.0; MODE=1; TEXT='?'; /DEFAULT: B1=-128; E1=-128; MI=0; MD=0; IM=0; ID=0; DM=0; DI=0; M0=-15; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; IM=-76; II=-8; ID=-353; /M: SY='E'; M= -66,-252, 61, 66, -17, -23,-179,-189, -32,-206,-173, 18,-164, 31, 8, 38, 6, -70,-183, -40; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M=-111,-251, 79, 98, -41,-167,-180, -77,-155, -98, -16, -38,-165, -24,-152,-111,-153, 4,-182, 36; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='D'; M= -93,-252, 103, 77,-212,-166,-179,-189, -40,-206,-174, -23,-165, 17,-151, -4, -58,-192,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M= 29,-252, 38, 91,-212,-166,-179,-189, -50, -7, -19, -25, 16, 17,-151,-151,-152, -15,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='Q'; M= -80,-252, 67, 61,-212,-166,-179, -4,-153, 18, 65, -15,-165, 73, 33,-151,-152,-192,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='L'; M=-208,-220,-251,-258, 21,-224,-218, 69,-314, 88, 9,-238,-228,-240,-230,-226,-205,-178,-165, 44; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='Q'; M= 51,-252, 2, 49,-212,-166,-179,-189, -27, -44, 29,-138,-165, 91, 22, -44,-152,-192,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='M'; M= 3, -10,-134, -17,-111,-166,-180, -39, 29, 37, 72,-138,-165, 55, 55,-151, -41,-192, 41, 27; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='A'; M= 101,-227,-180,-184,-178,-198,-203,-166,-203,-183,-159,-181,-198,-189,-190,-188,-121, 17,-169,-172; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='I'; M=-176,-237,-152,-156,-191,-180,-190, 94, -50, 70, 62,-155,-179, -16,-167,-166, -18, 13,-175,-175; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M= 43,-252,-133, 73,-212,-166,-179,-189, -4, -42, 16, -43,-165, 64, 40, -5, -44,-192,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='M'; M= -4,-237,-153, 72,-190,-180,-190, 4,-174, 56, 111,-156,-180, 24,-168,-167,-166, -28,-175, -96; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='S'; M= -51,-241,-145, -40,-196,-175,-186,-179,-166,-196,-168,-149,-174,-158,-162, 113,-161,-188,-178,-176; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='M'; M= -28,-252,-134, 11,-212,-166,-179,-189, 33, 62, 93,-138,-165, 18, 42,-151, -54, -12,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M= -10,-252, -34, 65,-113, -33, -28, -20, 40, -27, -33, -37,-165, 65, 23, -10, -52, -62,-183,-178; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M= -40,-252, 61, 96,-212, -23,-179, -72,-153, -92, -39, 30,-165, -4,-151, -42, 10, -46,-183, -73; /I: MI=-423; MD=-343; IM=-76; II=-8; ID=-356; DM=-43; DI=-230; DD=-21; /M: SY='E'; M= 31, -93, -40, 48, 14, -48, -26, -39, -5, -30, 34, 12, -20, 39,-151, 9, -8, -17,-183, -3; /I: MI=-419; MD=-340; IM=-76; II=-8; ID=-355; DM=-43; DI=-228; DD=-21; /M: SY='E'; M= -9,-250, -20, 74,-209, 8,-177,-187, -9,-203, -56, 47, -4, 18, 29, 10, -21, -38,-180,-175; /I: MI=-419; MD=-340; IM=-76; II=-8; ID=-355; DM=-43; DI=-228; DD=-21; /M: SY='M'; M= -2,-250, 9, 56, -63, -40, -7,-186, 29, -28, 58, 6, 5, 35, 7, -4, -24,-189,-180, -38; /I: MI=-419; MD=-340; IM=-76; II=-8; ID=-355; DM=-43; DI=-228; DD=-21; /M: SY='R'; M= -9,-249, 29, 19, -50, 12, -35, -30, -9, -82,-170, -22, 13, 0, 63, 24, -32, -13, 19,-175; /I: E1=0; MI=-419; II=-8; DI=-189;» more |
Numerical results [info]
| Total number of hits | 214 in 131 different sequences |
| Number of true positive hits | 210 in 127 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 4 in 4 different sequences |
| Number of false negative sequences | 41 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.13 % |
| Recall (true positives / (true positives + false negatives)) | 83.67 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 3 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | K_Hofmann |
| Feature key [info] | DOMAIN |
| Feature description [info] | UIM |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
127 sequences
AKIB1_DANRE (Q1L8G6), AKIB1_HUMAN (Q9P2G1), AKIB1_MOUSE (Q6ZPS6), AN13A_HUMAN (Q8IZ07), AN13A_MOUSE (Q80UP5), AN13B_HUMAN (Q86YJ7), AN13B_MOUSE (Q5F259), AN13D_HUMAN (Q6ZTN6), AN13D_MOUSE (Q6PD24), ASB2_MOUSE (Q8K0L0), ATX3L_HUMAN (Q9H3M9), ATX3_CAEBR (Q60XN1), ATX3_CHICK (Q9W689), ATX3_HUMAN (P54252), ATX3_MOUSE (Q9CVD2), ATX3_RAT(O35815), DA1_ARATH (P0C7Q8), DAR1_ARATH (Q8W4F0), DAR6_ARATH (Q9FJX8), DNJB2_HUMAN (P25686), DNJB2_MOUSE (Q9QYI5), ENT1_SCHPO (O74423), ENT1_YEAST (Q12518), ENT2_YEAST (Q05785), EP15R_MOUSE (Q60902), EPN1_HUMAN (Q9Y6I3), EPN1_MOUSE (Q80VP1), EPN1_RAT(O88339), EPN2_HUMAN (O95208), EPN2_MOUSE (Q8CHU3), EPN2_RAT(Q9Z1Z3), EPN3_HUMAN (Q9H201), EPN3_MOUSE (Q91W69), EPN3_RAT(Q4V882), EPS15_HUMAN (P42566), EPS15_MOUSE (P42567), HGS_BOVIN (Q0V8S0), HGS_HUMAN (O14964), HGS_MOUSE (Q99LI8), HGS_RAT (Q9JJ50), HRS_DROME (Q960X8), HSE1_CANAL (Q5A895), HSE1_CANGA (Q6FN49), HSE1_CHAGB (Q2GT05), HSE1_CRYNB (P0CR79), HSE1_CRYNJ (P0CR78), HSE1_DEBHA (Q6BNP6), HSE1_EREGS (Q75DS3), HSE1_KLULA (Q6CVA8), HSE1_NEUCR (Q7S6J4), HSE1_PICST (A3LXQ8), HSE1_PYRO7 (A4RF61), HSE1_SCHPO (O74749), HSE1_YARLI (Q6C2N2), HSE1_YEAST (P38753), MAT1_HUMAN (P51948), MAT1_MOUSE (P51949), MAT1_XENLA (P51951), PIKI1_CAEEL (G5EDY0), POF10_SCHPO (Q9P7W4), PSMD4_ARATH (P55034), PSMD4_BOVIN (Q58DA0), PSMD4_CAEEL (O61742), PSMD4_DICDI (Q553E0), PSMD4_DROME (P55035), PSMD4_HUMAN (P55036), PSMD4_MOUSE (O35226), PSMD4_SCHMA (O17453), PSMDA_ORYSJ (O82143), PUX7_ARATH (Q94JZ8), PUX8_ARATH (F4JPR7), PUX9_ARATH (Q4V3D3), RAD13_SCHPO (P28706), RN166_CHICK (Q5F3B2), RN166_XENLA (Q3KPU8), RPN10_SCHPO (O94444), RPN10_YEAST (P38886), SPP41_YEAST (P38904), STAM1_CAEEL (O01498), STAM1_HUMAN (Q92783), STAM1_MOUSE (P70297), STAM2_CHICK (O93436), STAM2_HUMAN (O75886), STAM2_MOUSE (O88811), STAM2_RAT (Q5XHY7), UBP25_HUMAN (Q9UHP3), UBP25_MOUSE (P57080), UBP37_BOVIN (F1N5V1), UBP37_CANLF (E2RK09), UBP37_CHICK (E1C213), UBP37_DANRE (E7F6T8), UBP37_HUMAN (Q86T82), UBP37_MOUSE (Q8C0R0), UBP37_PIG (F1SRY5), UBXN7_DICDI (Q55BU7), UFO1_YEAST (Q04511), UIMC1_HUMAN (Q96RL1), UIMC1_MOUSE (Q5U5Q9), UIMC1_PIG (A0P8Z5), UIMC1_RAT (Q5PQK4), UIMC1_XENTR (A0JM80), UPL1_ARATH (Q8GY23), UPL2_ARATH (Q8H0T4), VPS27_ASPCL (A1CEK1), VPS27_ASPFU (Q4WHN8), VPS27_ASPNC (A2QWA2), VPS27_ASPTN (Q0CJV3), VPS27_CANAL (Q5ABD9), VPS27_CANGA (Q6FQJ1), VPS27_CHAGB (Q2GS33), VPS27_CRYNB (P0CS27), VPS27_CRYNJ (P0CS26), VPS27_DEBHA (Q6BSD6), VPS27_EMENI (Q5BBK9), VPS27_EREGS (Q755J9), VPS27_KLULA (Q6CL17), VPS27_NEOFI (A1DFP5), VPS27_NEUCR (Q7RZJ2), VPS27_PHANO (Q0U4Z8), VPS27_PICST (A3LX75), VPS27_PYRO7 (A4QTV1), VPS27_SCHPO (O13821), VPS27_YARLI (Q6CFT4), VPS27_YEAST (P40343), ZFN2B_HUMAN (Q8WV99), ZFN2B_MOUSE (Q91X58), ZFN2B_RAT (Q4KLG9)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
41 sequences
ASB2_BOVIN (Q3SX45), ASB2_HUMAN (Q96Q27), ASB2_RAT(Q5U2S6), ATX3H_ARATH (Q9M391), ATX3_CAEEL (O17850), ATX3_ORYSJ (Q8LQ36), DAR2_ARATH (Q0WSN2), DAR7_ARATH (Q9FJX9), HDR3_ORYSJ (Q10NJ6), HSE1_ASPCL (A1CEK6), HSE1_ASPFU (Q4WHP5), HSE1_ASPNC (A2QW93), HSE1_ASPTN (Q0CJU8), HSE1_COCIM (Q1E878), HSE1_EMENI (Q5BBL4), HSE1_MYCMD (Q4P5J4), HSE1_NEOFI (A1DFN5), HSE1_PHANO (Q0U6X7), HUWE1_HUMAN (Q7Z6Z7), HUWE1_MOUSE (Q7TMY8), HUWE1_RAT (P51593), IGBP1_HUMAN (P78318), IGBP1_MOUSE (Q61249), IGBP1_RAT (O08836), OTUD1_HUMAN (Q5VV17), OTUD1_MOUSE (Q9CUB6), PIPSL_HUMAN (A2A3N6), RBNS5_HUMAN (Q9H1K0), RBNS5_MOUSE (Q80Y56), RN166_HUMAN (Q96A37), RN166_MOUSE (Q3U9F6), RN166_RAT (Q6J1I7), UBP28_CHICK (Q5ZID5), UBP28_HUMAN (Q96RU2), UBP28_MOUSE (Q5I043), UBP28_RAT (D3ZJ96), UBXN7_HUMAN (O94888), UBXN7_MOUSE (Q6P5G6), UBXN7_PONAB (Q5REY7), VPS27_MYCMD (Q4P7Q1), Y3893_DICDI (Q54QG5)» more |
| UniProtKB/Swiss-Prot False positive sequences |
4 sequences
MPH1_ASPNC (A2Q8R2), MPH1_ASPTN (Q0CWI2), MPH1_NEOFI (A1D4V5), SIS8_ARATH (Q9C9U5)» more |
| PDB [Detailed view] |
134 PDB
pdb_00001o06; pdb_00001p9c; pdb_00001p9d; pdb_00001q0v; pdb_00001q0w; pdb_00001uel; pdb_00001yx4; pdb_00001yx5; pdb_00001yx6; pdb_00002d3g; pdb_00002kde; pdb_00002kdf; pdb_00002kdi; pdb_00002klz; pdb_00002lva; pdb_00002mkf; pdb_00002mkg; pdb_00002muu; pdb_00002mux; pdb_00002rr9; pdb_00003a1q; pdb_00003jco; pdb_00003jcp; pdb_00004cr2; pdb_00004cr3; pdb_00004cr4; pdb_00004xkh; pdb_00005a5b; pdb_00005gjq; pdb_00005gjr; pdb_00005ixf; pdb_00005l4k; pdb_00005ln3; pdb_00005m32; pdb_00005mpb; pdb_00005mpc; pdb_00005mpd; pdb_00005mpe; pdb_00005o71; pdb_00005t0c; pdb_00005t0g; pdb_00005t0h; pdb_00005t0i; pdb_00005t0j; pdb_00005wvi; pdb_00005wvk; pdb_00006j2c; pdb_00006j2n; pdb_00006j2q; pdb_00006j2x; pdb_00006j30; pdb_00006msb; pdb_00006msd; pdb_00006mse; pdb_00006msg; pdb_00006msh; pdb_00006msj; pdb_00006msk; pdb_00006mun; pdb_00006njg; pdb_00006nmi; pdb_00006o9l; pdb_00006o9m; pdb_00006wjd; pdb_00006xbz; pdb_00007b5o; pdb_00007b5q; pdb_00007egb; pdb_00007egc; pdb_00007ena; pdb_00007enc; pdb_00007jq9; pdb_00007lbm; pdb_00007mop; pdb_00007mwd; pdb_00007mwe; pdb_00007mwf; pdb_00007nvr; pdb_00007nvw; pdb_00007nvx; pdb_00007nvy; pdb_00007nvz; pdb_00007nw0; pdb_00007qo3; pdb_00007qo5; pdb_00007qxn; pdb_00007qxp; pdb_00007qxu; pdb_00007qxw; pdb_00007qxx; pdb_00007qy7; pdb_00007qya; pdb_00007qyb; pdb_00007rma; pdb_00007w37; pdb_00007w38; pdb_00007w39; pdb_00007w3a; pdb_00007w3b; pdb_00007w3c; pdb_00007w3f; pdb_00007w3g; pdb_00007w3h; pdb_00007w3i; pdb_00007w3j; pdb_00007w3k; pdb_00007w3m; pdb_00008bvw; pdb_00008byq; pdb_00008cvt; pdb_00008gxq; pdb_00008gxs; pdb_00008jri; pdb_00008jrt; pdb_00008jti; pdb_00008k0g; pdb_00008p7l; pdb_00008usb; pdb_00008usc; pdb_00008wak; pdb_00008wal; pdb_00008wan; pdb_00008wao; pdb_00008wap; pdb_00008waq; pdb_00008war; pdb_00008was; pdb_00009e8g; pdb_00009e8h; pdb_00009e8i; pdb_00009e8j; pdb_00009e8l; pdb_00009e8o; pdb_00009e8q » more |