PROSITE entry PS50937
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General information about the entry
| Entry name [info] | HTH_MERR_2 |
| Accession [info] | PS50937 |
| Entry type [info] | MATRIX |
| Date [info] |
01-OCT-2003 CREATED;
10-MAY-2017 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00477 |
| Associated ProRule [info] | PRU00254 |
Name and characterization of the entry
| Description [info] | MerR-type HTH domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=71; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=71; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6280272; R2=0.0003213; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=319344.7187500; R2=2.5783896; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=19832; H_SCORE=370479; N_SCORE=9.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=12051; H_SCORE=350417; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: B1=*; E1=*; MM=*; II=*; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=-8455; E0=*; BM=-54; BD=-4755; /M: SY='M'; M= 237,-3209,-2153, -487,-3393,-1064, 760,-3053, 242, 931, 2005, 750,-3256,-1450, -323, -811, 923, 118,-3482, 1153; M0=-608; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-4443,-4043,-6189,-5925, 1577,-5678, 724, 349,-5514, 1552, 445,-4875,-5624,-4769,-5156,-4822,-4362,-3552, 1489, 3661; M0=-3218; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M=-2467,-3782,-2405,-1816,-4147,-3416,-2007,-3838, -292,-3791,-2913,-2084, -275, 795, 1433, 1055, 2893, -640,-3946,-3357; M0=-1559; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-3893,-3457,-6508,-6105,-3994,-6123,-5669, 3340,-5949,-2978, 1503,-5801, -695,-5777,-5974,-5393, 398, 1748,-5297,-4855; M0=-3510; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M= -875,-4398,-3408,-2762,-5169, 2891,-2625,-4756, 1224,-4584,-3773,-2901,-4233, -426, 115, 1326,-3236,-4340,-4593,-4199; M0=-2201; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-2346,-3741,-2234, 2583,-4083,-3301,-1898, -521, 1426,-3735,-2837,-1943,-3383, 1186, 1192,-2232, -218, 227,-3885,-3261; M0=-1449; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M= 1026,-3396,-6128,-5544, 998,-5498,-4430, 41,-5215, 1753, 641,-5154,-5340,-4697,-4995,-4645,-3649, 2350,-3972,-3767; M0=-2725; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='A'; M= 3344,-3829,-4678,-4026,-5219,-4067,-3510,-4798, -617,-4861, 833,-3740,-4527,-3191, -758, 229,-3403,-4272,-5016,-4769; M0=-2864; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M=-2093,-3564, 469, 1570,-3884, -188,-1724,-3634, 2141, -324,-2653,-1702,-3159, 341, 1359,-1973, -409, -757,-3746,-3065; M0=-988; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='M'; M= 487,-2378, -389,-2872, -308, -839,-2429, 60, 1124, 1573, 2282,-2844,-3701,-2485, 1213,-2656,-2205,-1812,-2805,-2417; M0=-957; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='C'; M= 1637, 2893,-4596,-3974,-2161, -847,-2762, -220,-3591, 11,-1408,-3493,-3923,-3232,-3426, 810, 1866,-1617,-2662, 706; M0=-1397; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M= -796,-4247, 950, -315,-4548, 3001,-2266,-4323,-1966,-4256,-3363, 44,-3643, 276, -205, -157,-2666,-3863,-4427,-3693; M0=-1741; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='V'; M=-4065, 1057,-6730,-6381,-4220,-6504,-6316, 1973,-6306, 425,-2952,-6158,-6278,-6216,-6422,-5838, -332, 3085,-5800,-5308; M0=-3751; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='S'; M= 346,-3573,-1968,-1420,-3899,-3087, 873,-3646, -57,-3593,-2671, 1830, -487,-1289, -13, 2072, 1512,-3200,-3762,-3086; M0=-1302; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= 554,-3169,-2196, -150,-3339,-3189,-1871, 182, 812,-3119,-2301,-1914, 2037,-1486, 132, -627, -412, 1869,-3452,-2877; M0=-943; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= 267,-3557, 446, 768,-3876,-3062, 871, -980, -54,-3572,-2646,-1697,-3155, 1513, 1968, 421,-2026, 87,-3741, 986; M0=-937; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M= 1095,-2291,-4613,-4003, 235,-3931,-2854, -93,-3631,-2067, 836,-3558,-4006, 33,-3493,-3023, 3294,-1674,-2768,-2424; M0=-1960; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-4788,-4220,-7371,-6944,-3329,-7237,-6544, 1768,-6855, 2826,-2071,-6927,-6561,-6048,-6630,-6643,-4720, 922,-5190,-5244; M0=-4278; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-6012,-5215,-6704,-6660, 396,-6507, 3047, -103,-5409,-4559,-4535,-5208,-6388,-5097, 3631,-5749,-5861,-5194,-2254, 701; M0=-4206; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M= 742,-4054, -208,-2493, 2513,-4020, 3085,-3899,-2615,-3883,-3232, 281,-4169, 175,-3073,-3092,-3107,-3665,-2998, 2893; M0=-2033; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-6516,-5435,-6895,-7249,-1494,-6770,-2971,-5362,-6797, -962,-4757,-5394,-6627,-5529,-6163,-6032,-6367,-5542, 3456, 4623; M0=-4996; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-3866,-5695, 2248, 2985,-5892, -536, 797,-5777,-3310,-1168,-4922,-2531,-4419, 1036,-4080,-3562,-3905,-5268,-5847,-4898; M0=-2649; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= -61,-3560, -486, 1027,-3882,-3061, 630,-3632, 1878,-1152,-2650, -255,-3154, 205, 2169, -701, 276,-3182,-3744,-3061; M0=-1080; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M= -471,-3426,-2023, 1295,-3687,-3109, 885, 1857, 1023, 94,-2532,-1771,-3200, 171, 1273,-2022, -455,-3016,-3646, 197; M0=-920; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M=-2881,-4440, -78, -509,-4733, 3200, 693,-4513,-2127,-4440,-3562, 91,-3775, 68, -92,-2706,-2847,-4052,-4609, 392; M0=-2024; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-5091,-4614,-7524,-6979,-2884, -675,-5960,-2291,-6730, 3179, 815,-6866,-6357,-5607,-6253,-6314,-4998, -572,-4649,-4822; M0=-3981; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-5122,-4547,-7564,-7011, 1612,-7323,-6129, 2338,-6823, 2132, 803,-7029,-6485,-5718,-6384,-6670,-4993, 956,-4753,-4923; M0=-4055; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= -98,-3560, -249, 386,-3880,-3061, 645,-3631, 968,-2293,-2649, -255, 2010,-1260, 222, 1000, 1063,-1066,-3743,-3060; M0=-870; /I: MM=-554; MI=-9860; MD=-1654; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='P'; M= -349,-3453,-1534, 834,-3782, -592, 2067,-3533,-1179,-3475,-2571, 385, 3129,-1131, 408,-1848,-1931,-3086,-3643,-2954; M0=-1359; /I: MM=-92; MI=-4038; MD=-10351; IM=-152; II=-3325; DM=-87; DD=-4101; /M: SY='P'; M= -712,-3143,-2409, 370,-3349,-3311,-2079,-2982,-1784,-3150,-2360,-2130, 3059,-1730, -423, 1275,-2217, 739,-3519, 265; M0=-1308; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M= 439,-3497, 621, 669,-3789, -19,-1739, 368, -153, -197,-2593,-1724, -697, 1750,-1834, -606, -237, 1013,-3697,-3032; M0=-485; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-2879, 1179, -318,-2382,-4141, -945,-2330,-3734, 645,-1505,-3000,-2569,-3899,-1937, 3646,-2851,-2783, -912,-4004,-3549; M0=-1825; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='T'; M=-2316,-3810, -246, -301,-4126, -980,-1926,-3884, 523,-3825,-2909, 1428, 585,-1475,-2067, 1312, 2550,-3431,-3994,-3295; M0=-1378; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 1081,-3560, 1309, 2098,-3881,-3061, 459,-3632, -15,-3576,-2649, -50, -17, 241, -219, -701, -251,-3182,-3744, 230; M0=-1057; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M= 334,-3549,-2035,-1492,-3896, 2725,-1810,-3631, 291,-3600,-2689, 696,-3230,-1358, -641, 526, -290,-3198,-3784, 81; M0=-1288; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='G'; M=-3794,-4723,-3288,-3177,-5983, 3046,-3237,-5553, -385,-5342,-4611, 2263,-4663,-2853, -42, 210,-3848,-5031,-5298,-4966; M0=-2803; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-2233,-2753,-2726,-2165, 709, -717, 2538, 183,-2007,-2646,-1922, -191,-3504, 628, 978,-2395, -457,-2226,-3090, 3426; M0=-1241; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-6269,-6042,-6941,-6801,-7665, -643,-6014,-8097,-5256,-7678,-7255,-6525,-6519,-6008, 4203,-6493,-6480,-7510,-6544,-7309; M0=-5819; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M=-3001,-2787,-5345,-4713, 0,-4588,-3433, -417,-4322, 1677, 1502,-4235,-4556,-3863, 2596,-3686,-2933, 462,-3157, 1736; M0=-2162; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Y'; M=-6538,-5449,-6898,-7260, 2302,-6767,-2978,-5430,-6822,-4730,-4829,-5402,-6633,-5544,-6182,-6042,-6391,-5588,-2224, 4610; M0=-5282; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='S'; M=-2125,-3600, 955,-1411,-3921, 67,-1753,-3672, 321,-3615,-2690, 743,-3186, 234, 258, 2132, 1547,-3222,-3782,-3098; M0=-1262; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= -544,-3580, 2061, 1679, -120,-3078,-1738,-3651, 177,-3595,-2670,-1714,-3173, 861, 2099,-1989,-2049,-3203,-3762, 210; M0=-1340; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 1037,-3560, 360, 1920,-3881,-3061, 833,-3632, 511,-3576,-2649, 103,-3154, 1306, -76, 162, -389,-1825,-3743, 345; M0=-1033; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= 537,-3664, 2999, -75,-3979,-3130, 700,-3730,-1417,-3678,-2759,-1766,-3243, 1581,-1930, -665, 616, -980,-3851,-3164; M0=-1437; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M=-1207,-3724,-6771,-6334, 25,-6439,-5788, 2114,-6171, 2040,-2357,-6098,-6133,-5750,-6087,-5718,-4153, 2091,-5082,-4858; M0=-3452; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M= -639,-3535, 1546, 1828,-3844,-3070,-1730, -595,-1315,-1441,-2628,-1710,-3163, 2307, 1624,-1978, -653,-1812,-3726,-3051; M0=-1125; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= -498,-2249,-4017,-3415, -25,-3767, 781, 617, 577, -696,-1447,-3187,-3824,-2866, 3130,-2821, -292,-1671, 1408, 73; M0=-1372; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -704,-3809,-6628,-6059, 89,-6093,-5018, 606,-5768, 2481, 798,-5758,-5777,-5111,-5505,-5280,-4120, 1915,-4317,-4221; M0=-3153; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M= 93, 1074, -181,-1413,-3812,-3076, 1411,-3546, 112, 311,-2608,-1720,-3168, 2203, 1914, 569,-2032,-1048,-3709,-3040; M0=-971; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M=-2287,-2342,-3633, 303, 2956, -439,-2492, -418,-2803, -116,-1532,-2962,-3751, 1893, 1171,-2721,-2227, 275,-2774,-2396; M0=-1189; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M= -699,-3639,-6788,-6428,-4053,-6566,-6304, 3341,-6347, -197, 1167,-6220,-6298,-6168,-6422,-5901,-4116, 1794,-5674,-5273; M0=-3771; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= -525,-3702,-2226,-1649,-4030,-3289,-1892, -643, 2452, -155,-2800, 315,-3371, 1005, 2210, -540,-2254,-3330,-3855,-3234; M0=-1263; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='H'; M= 565, 912, -182, -132, 956,-3178, 2108, -780,-1527,-1082,-2309,-1898,-3266, 1203, 1364, 663, -411, -58,-3458,-2878; M0=-625; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='M'; M= 1803, 1046,-4674,-4038, 777,-3876, 479, 158,-3633, 1660, 2095,-3522,-3926,-3255,-3433,-2961,-2270,-1568, 1542, 1; M0=-1663; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='Q'; M=-2337,-2806,-2905,-2318, 19,-3534,-2223, 525, 2141, -884,-1977,-2463,-3604, 2187, 1945, -581,-2270, -331,-3167,-2725; M0=-1209; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= -62,-3577, 1490, 1968,-3897,-3071, 684,-3648,-1315,-3592,-2666, -51,-3166, 1880, 1458, -591,-2042,-3198,-3760, 209; M0=-1318; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -556, 996, -401, -462,-2323,-3666,-2469, 838,-2772, 1956, 675, -181,-3729, 1506,-2923,-2693, 377, -561,-2773,-2392; M0=-997; /I: MM=-2559; MI=-9860; MD=-270; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M=-3020,-3587,-1226, 3796,-4314,-2753,-2403,-4538,-2542,-4406,-3979,-1883,-3264,-2228,-2966,-2859,-3140,-4142,-3836,-3748; M0=-2763; /I: MM=-14; MI=-7314; MD=-8356; IM=-894; II=-1115; DM=-36; DD=-5344; /M: SY='G'; M=-4534,-6364, 546, -566,-6748, 3637,-3781,-6803,-4264,-6618,-6097,-2894,-4860,-3492,-5295,-4160,-4668,-6196,-6696,-5674; M0=-3996; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='F'; M=-2788,-2585,-5139,-4507, 2943,-4368,-3235, 1349,-4114, 155, 2534,-4017,-4368,-3690,-3901,-3463, 985, 464, 1958,-2715; M0=-2129; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='S'; M= -474,-3574,-2090,-1561,-4020, -677,-1892,-3768,-1479,-3724,-2801, 876, 2066, 1632, -453, 2167, -579,-3299,-3895,-3224; M0=-1337; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M=-5117,-4569,-7509,-6919,-2861,-7187,-5895, -52,-6689, 2991, 1022,-6889,-6391,-5579,-6227,-6490,-4977, 448,-4606, 685; M0=-4071; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 861,-3662, 867, 1857,-3981, -686,-1803,-3735, 1219,-3677,-2754, -228,-3230, 854,-1912, 1307,-2122,-3283,-3845,-3156; M0=-1258; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='E'; M= 233,-3585, 1822, 2435,-3904, 174, 771,-3655, -77,-3600,-2675,-1713,-3176,-1285,-1837, -606, -525, -373,-3769,-3085; M0=-1161; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='I'; M= 224,-3627,-6769,-6405,-4046,-6534,-6251, 3559,-6317, -835, 813,-6190,-6276,-6137,-6387,-5864,-4101, 998,-5643,-5240; M0=-3790; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='K'; M= 1122, 1172, -453,-1387,-3878, -134, 1366, -485, 2047,-3574,-2648, -51,-3155, 847, 1365,-1023,-2027,-3180,-3742,-3060; M0=-1042; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='R'; M= 813, 1026, 119, 1839,-3874,-3063,-1721,-3623, 467,-1512, 623,-1699,-3156, 1042, 1967,-1969, -396,-3176,-3740,-3059; M0=-1117; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= 1345,-2696,-5256,-4625, 846,-4495,-3360, 1615,-4234, 2048, 563,-4144,-4478, 88,-4017,-3592,-2840, -235,-3115,-2830; M0=-1998; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -740, 1237,-4849,-4215, 1281,-4062,-2934, 1175,-3815, 2318, 717,-3708,-4095, -37,-3611,-3150,-2440, 489,-2772,-2443; M0=-1782; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='D'; M= -715,-3559, 1476, 480,-3880, 1227, 745, -468, 1054,-1136,-2649,-1696,-3154, 22, 680, 604, -408,-3181,-3743,-3060; M0=-725; /I: MM=-2; MI=-9860; MD=-10902; IM=-894; II=-1115; DM=-701; DD=-1378; /M: SY='L'; M= -558, 1036, 754,-3367,-2219, 14, 368, 94,-3093, 1295, 933, -207,-3810, -272,-3126, -737, 395, 1012,-2695, 225; M0=-674; /I: B0=*; E1=-1000;» more |
Numerical results [info]
| Total number of hits | 80 in 80 different sequences |
| Number of true positive hits | 80 in 80 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | PS_Langendijk_Genevaux |
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | HTH merR-type |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
80 sequences
ADHR_BACSU (O06008), BLTR_BACSU (P39842), BLUR_ECOLI (P75989), BMRR_BACSU (P39075), CARA_MYXXA (Q50899), CARH_MYXXA (Q50900), CARH_THET8 (Q53W62), CUER_BACSU (O07586), CUER_ECO57 (Q8XD09), CUER_ECOL6 (Q8FK74), CUER_ECOLI (P0A9G4), CUER_SALTI (Q8Z8S3), CUER_SALTY (Q93CH6), CUER_SHIFL (P0A9G5), CUER_VIBC3 (A5F2W6), CUER_VIBCH (P0C6D2), CUER_YERPE (Q8ZCA8), GLNR_BACAN (P62172), GLNR_BACCE (P62173), GLNR_BACCR (P62174), GLNR_BACSU (P37582), HMMR_RHILV (Q9X5V4), HMRR1_RHIME (P58378), HMRR2_RHIME (P58379), HMRR_SINMW (Q9X5X4), HSPR_STRCO (P40183), MERD_ACICA (Q52110), MERD_ENTAG (P0A2Q7), MERD_PSEAI (P06689), MERD_PSEFL (Q51773), MERD_SALTI (P0A2Q6), MERD_SERMA (P08654), MERD_SHIFL (P20102), MERR_ACIFR (P22896), MERR_BACCE (P22853), MERR_PSEAI (P0A183), MERR_PSEFL (P0A184), MERR_PSESP (P69413), MERR_SALTI (P0A2Q8), MERR_SERMA (P13111), MERR_SHIFL (P0A2Q9), MERR_STAAU (P22874), MLRA_ECOLI (P33358), MLRA_SALTS (E1WH94), MLRA_SALTY (P0CL12), MTA_BACSU (P71039), NOLA_BRADU (P22537), NOLA_BRAEL (P50329), NOLA_BRASN (P50330), SKGA_CAUVC (P0CAV4), SKGA_CAUVN (B8H172), SOXR_CHRVO (Q9ZHI4), SOXR_ECO57 (P0ACS3), SOXR_ECOLI (P0ACS2), SOXR_PSEAE (Q51506), SOXR_SALTI (P0A2R1), SOXR_SALTY (P0A2R0), SOXR_SHIFL (P0ACS4), TIPA_STRCO (P0A4T8), TIPA_STRLI (P0A4T9), TNRA_BACSU (Q45666), TNRA_PRIMW (G2RUZ1), Y1828_MYCTO (P9WME6), Y1828_MYCTU (P9WME7), Y1830_MYCTO (P9WME4), Y1830_MYCTU (P9WME5), Y1859_MYCBO (P67670), Y1861_MYCBO (P67672), Y186_HAEIN (P44558), Y293_HAEIN (P44617), Y4778_PSEAE (Q9HV30), Y603_AQUAE (O66861), Y701_SYNY3 (Q55963), YDFL_BACSU (P96690), YFMP_BACSU (O06474), YHI4_RHOCA (P30791), YYAN_BACSU (P37510), ZNTR_ECO57 (P0ACS6), ZNTR_ECOLI (P0ACS5), ZNTR_HAEIN (P45277)» more
|
| PDB [Detailed view] |
40 PDB
1EXI; 1EXJ; 1JBG; 1Q05; 1Q06; 1Q07; 1Q08; 1Q09; 1Q0A; 1R8D; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S; 4R22; 4R24; 4R4E; 4WLS; 4WLW; 5CRL; 5D8C; 5D90; 5E01; 6LDI; 6XH7; 6XH8; 7C17; 7CKQ; 7CLA » more |