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| Entry: PS50941 |
General information about the entry
| Entry name [info] | CHIT_BIND_I_2 |
| Accession [info] | PS50941 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-2003 CREATED;
01-NOV-2003 DATA UPDATE; 02-JUN-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00025 |
| Associated ProRule [info] | PRU00261 |
Name and characterization of the entry
| Description [info] | Chitin-binding type-1 domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=42; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=42; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2388287; R2=0.0049724; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=1059; N_SCORE=7.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=938; N_SCORE=6.9; MODE=1; TEXT='RR'; /DEFAULT: M0=-10; D=-30; I=-30; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='A'; M= 12, 1,-19, -1, -4,-19, -7, -9,-16, -5,-15,-12, 0,-13, -6, -9, 5, -1, -9,-24,-12, -5; /M: SY='Q'; M= -4, -3,-29, -3, 10,-27, -7, 2,-22, 1,-21,-10, -1, -9, 18, -2, -2,-10,-24,-13,-11, 14; /M: SY='Q'; M=-10, 6,-27, 4, 15,-27,-15, 3,-24, 12,-21,-11, 10,-11, 21, 19, 0, -6,-24,-26,-14, 17; /M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30, -9,-10,-10,-50,-30,-30; /M: SY='G'; M= -2, -8,-29, -8,-17,-29, 56,-18,-35,-17,-27,-17, -1,-18,-17,-17, -1,-18,-26,-21,-27,-17; /I: I=-5; MD=-16; /M: SY='R'; M= -6, -7,-22, -6, 0,-19,-13, -3,-19, 9,-19,-10, -2, 3, 2, 15, 0, -2,-14,-22,-12, -1; D=-5; /I: I=-5; MI=0; MD=-16; IM=0; DM=-16; /M: SY='Q'; M= -6, 6,-20, 7, 10,-22,-11, 3,-16, 2,-14, -7, 3, -8, 21, 1, 0, -6,-18,-13, -8, 16; D=-5; /I: I=-5; DM=-16; /M: SY='A'; M= 13, -9,-13,-14, -9, -4, -4,-12, -8, -5, -7, -6, -7,-10, -9, -8, 0, -3, -3,-12, -7, -9; D=-5; /I: I=-5; DM=-16; /M: SY='G'; M= -1, -4,-22, -5,-10,-19, 31,-10,-25,-11,-21,-14, 1,-12, -9,-12, 2, -9,-20,-16,-15,-10; D=-5; /I: I=-5; DM=-16; /M: SY='G'; M= -4, 2,-22, 0, -9,-18, 29, -9,-26, -9,-22,-15, 9,-16,-10, -6, 1,-10,-21,-20,-18,-10; D=-5; /I: I=-5; DM=-16; /M: SY='A'; M= 8, -6,-18, -9, -3,-20, -3,-11,-16, 2,-15, -9, -4, -6, 0, 2, 2, -1,-10,-20,-15, -3; D=-5; /I: I=-5; DM=-16; /M: SY='T'; M= -4,-13,-16,-14, -8, -6,-16,-15, -2,-10, 3, -2,-11,-11,-10, -7, -2, 6, 1,-23, -9,-10; D=-5; /I: I=-5; DM=-16; /M: SY='C'; M=-10,-20,116,-30,-30,-17,-30,-30,-29,-30,-19,-19,-20,-40,-30,-30,-10,-10,-10,-48,-28,-30; /M: SY='P'; M= 6,-12,-28,-10, -3,-25,-11,-14,-17, -9,-22,-15,-10, 38, -6,-16, 0, -4,-19,-28,-23, -7; /M: SY='N'; M= -3, 10,-23, 6, -2,-22, 5, -5,-22, -7,-22,-16, 17, -9, -4, -9, 6, -2,-22,-31,-20, -3; /M: SY='N'; M= -7, 13,-21, 8, -4,-25, 19, -7,-28, -7,-25,-18, 20,-18, -8, -8, 3, -8,-26,-31,-22, -6; /M: SY='L'; M= -8,-21,-22,-23,-13, 1,-26,-12, 8,-14, 21, 14,-20,-24,-10, -6,-19, -8, 4,-18, 1,-12; /I: I=-8; MI=0; MD=-27; IM=0; DM=-27; /M: SY='C'; M=-10,-20,115,-29,-29,-20,-30,-29,-30,-28,-20,-20,-19,-39,-29,-27,-10,-10,-10,-49,-29,-29; /M: SY='C'; M=-10,-20,118,-30,-30,-20,-30,-30,-30,-29,-20,-20,-20,-40,-29,-28,-10,-10,-10,-50,-30,-30; /M: SY='S'; M= 10, 0,-10, 0, 0,-20, 0,-10,-19,-10,-29,-20, 10,-10, 0,-10, 39, 20,-10,-40,-20, 0; /M: SY='Q'; M= -6, -4,-26, -4, 11,-27,-20, -4,-15, 10,-17, -5, -3,-10, 23, 7, -2, -7,-15,-23,-12, 16; /M: SY='W'; M=-11,-22,-29,-25,-21, 26,-19, -3,-10,-18, -6, -7,-19,-26,-19,-16,-19,-14,-13, 35, 33,-19; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='W'; M=-20,-30,-36,-32,-26, 30,-25, -8, -9,-18, -7, -9,-27,-30,-20,-16,-27,-18,-17, 74, 46,-21; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 69,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='T'; M= -4, 5,-17, 0, -6,-13,-10,-11,-12, -9,-12,-10, 9,-16, -8, -9, 9, 15, -9,-31,-13, -7; /M: SY='T'; M= 0, 0,-16, -6,-10,-17, 3,-17,-19,-11,-18,-14, 3,-12,-10,-11, 17, 27,-10,-29,-16,-10; /M: SY='D'; M= -3, 11,-25, 16, 13,-27,-10, -6,-24, -1,-23,-19, 5, 0, 2, -7, 5, -3,-20,-31,-18, 7; /M: SY='D'; M= -1, 13,-27, 20, 19,-30, -9, -7,-27, 1,-23,-20, 3, 3, 3, -8, 1, -7,-23,-30,-21, 11; /M: SY='Y'; M=-20,-19,-29,-20,-19, 30,-29, 24, -3,-12, -1, 0,-17,-29,-11,-10,-19,-11,-11, 21, 67,-19; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= -1, -3,-22, -4,-11,-28, 41,-16,-34,-12,-29,-19, 4,-17,-13,-14, 5,-11,-25,-26,-26,-12; /M: SY='E'; M= -4, 4,-25, 6, 7,-24, -8, -8,-23, 0,-23,-16, 3, 1, 1, -3, 4, -2,-20,-29,-18, 3; /I: I=-5; MI=0; MD=-17; IM=0; DM=-17; /M: SY='G'; M= -2, 1,-26, -2,-13,-25, 44,-13,-34,-14,-29,-20, 10,-19,-14,-14, 4,-12,-27,-25,-25,-13; /M: SY='C'; M=-10,-18,112,-27,-28,-20,-28,-29,-30,-29,-21,-20,-18,-38,-28,-29, -8, -9,-10,-49,-29,-28; /M: SY='Q'; M=-10, -3,-29, -2, 15,-31,-20, 5,-19, 8,-17, -2, -3, -8, 42, 9, -3,-10,-25,-19, -8, 28; /I: I=-7; MI=0; MD=-25; IM=0; DM=-25; /M: SY='S'; M= 4, -5,-16, -6, -9,-18, 17,-12,-24,-14,-26,-18, 3,-13, -9,-14, 20, 5,-16,-28,-16, -9; /M: SY='Q'; M= -6, 0,-29, -1, 7,-31, -8, -2,-22, 2,-24,-11, 5, 6, 21, 1, 1, -7,-27,-26,-18, 13; /M: SY='C'; M=-10,-19,115,-29,-29,-20,-30,-30,-29,-29,-20,-20,-19,-39,-29,-29, -9, -8,-10,-49,-29,-29; /M: SY='B'; M= -9, 4,-22, 4, -2,-18, -7, -8,-23, -3,-22,-17, 4,-13, -5, -1, 2, -2,-19,-15,-10, -4; /M: SY='G'; M= 1, -7,-22, -8, -8,-17, 3,-10,-17,-10,-18,-12, -3, -7, -7,-12, 3, -3,-14,-21, -9, -9; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 122 in 88 different sequences |
| Number of true positive hits | 122 in 88 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 6 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 98.39 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 7 |
| Feature key [info] | DOMAIN |
| Feature description [info] | Chitin-binding type-1 |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
88 sequences
AGI1_WHEAT (P10968 ), AGI2_WHEAT (P02876 ), AGI3_WHEAT (P10969 ), AGI_HORVU (P15312 ), AGI_ORYSI (Q01MB6 ), AGI_ORYSJ (Q0JF21 ), AGI_URTDI (P11218 ), AMP1_FAGES (P0DKH7 ), AMP1_STEME (E1UYT9 ), AMP2_FAGES (P0DKH8 ), AMP2_STEME (E1UYU0 ), AMP_AMARE (Q5I2B2 ), AMP_IPONI (P81591 ), AMP_LYMAR (P86521 ), AMP_TRIKH (P85966 ), CBLE_VISAL (P81859 ), CDA_PESTX (A0A1L3THR9), CHAL_BRARR (P81729 ), CHI12_ORYSJ (P25765 ), CHI1_GOSHI (Q39799 ), CHI1_HEVBR (Q949H3 ), CHI1_HORVU (P11955 ), CHI1_ORYSJ (Q42993 ), CHI1_SOLTU (P52403 ), CHI1_THECC (Q41596 ), CHI1_TOBAC (P08252 ), CHI2_BRANA (Q09023 ), CHI2_GOSHI (Q39785 ), CHI2_HEVBR (W0IWL0 ), CHI2_ORYSJ (Q7DNA1 ), CHI2_PEA (P21226 ), CHI2_SOLTU (P52404 ), CHI2_TOBAC (P24091 ), CHI3_ORYSJ (P24626 ), CHI3_SOLTU (P52405 ), CHI3_TOBAC (P29059 ), CHI4_BRANA (Q06209 ), CHI4_CRYJA (Q5NTA4 ), CHI4_ORYSJ (O04138 ), CHI4_PHAVU (P27054 ), CHI4_SOLTU (P52406 ), CHI58_ARATH (O24598 ), CHI59_ARATH (O24658 ), CHI5_ARATH (Q9M2U5 ), CHI5_ORYSJ (Q7Y1Z0 ), CHI5_PHAVU (P36361 ), CHI60_ARATH (O24654 ), CHI61_ARATH (O22842 ), CHI62_ARATH (O22841 ), CHI6_ORYSJ (Q6K8R2 ), CHI6_POPTR (P16579 ), CHI7_ORYSI (Q9SAY3 ), CHI7_ORYSJ (Q7Y1Z1 ), CHI8_POPTR (P16061 ), CHI9_ORYSJ (Q688M5 ), CHIA_MAIZE (P29022 ), CHIA_SECCE (Q9FRV1 ), CHIB_ARATH (P19171 ), CHIB_MAIZE (P29023 ), CHIB_POPTR (P29031 ), CHIB_VITVI (P51613 ), CHIC_POPTR (P29032 ), CHIC_SOLLC (Q05538 ), CHIL_HEVBR (Q8GUD7 ), CHIP_BETVU (P42820 ), CHIT_ACTCC (P86473 ), CHIT_DIOJA (P80052 ), CHIT_PERAE (P93680 ), CHIT_PHAVU (P06215 ), CHIT_SOLTU (P05315 ), CHIX_PEA (P36907 ), CHI_ARATH (O24603 ), EAP1_EUCUL (P83596 ), EAP2_EUCUL (P83597 ), HEVE_HEVBR (P02877 ), HEVL_ARATH (P43082 ), HEVP_HEVBR (P80359 ), KTXA_KLULA (P09805 ), LECB_PHYAM (Q9AVB0 ), LECC_PHYAM (Q9AYP9 ), LECT_SOLTU (Q9S8M0 ), LED2_PHYAM (P83790 ), LYSM4_ARTBC (D4B4Q2 ), MLX56_MORAL (A7XQ02 ), MO1_MOROL (A0A1S6EK91), MO2_MOROL (A0A1S6EK92), WIN1_SOLTU (P09761 ), WIN2_SOLTU (P09762 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
AMP3_STEME (C0HJU5 ), AMP_AMACA (P27275 ) |
| UniProtKB/Swiss-Prot 'Partial' sequences |
6 sequences
CHIB_PEA (P21227 ), CHIT_TRISX (C0HJM6 ), IAMY_COILA (P15326 ), IPLAA_MORAL (P86799 ), IPLAB_MORAL (P86800 ), LECA_PHYAM (P84282 )» more |
| PDB [Detailed view] |
38 PDB
1EN2; 1ENM; 1HEV; 1IQB; 1K7T; 1K7U; 1K7V; 1MMC; 1P9G; 1P9Z; 1Q9B; 1T0W; 1UHA; 1ULK; 1ULM; 1ULN; 1WGC; 1WGT; 1WKX; 1ZNT; 1ZUV; 1ZWU; 2CWG; 2DKV; 2KUS; 2LB7; 2N1S; 2UVO; 2WGC; 2X3T; 2X52; 3IWR; 4AML; 4MPI; 4WP4; 5WUZ; 7WGA; 9WGA » more |
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