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PROSITE entry PS50967


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50967
Entry name [info] HRDC
Accession [info] PS50967
Entry type [info] MATRIX
Date [info] 01-MAR-2004 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50967
Associated ProRule [info] PRU00328

Name and characterization of the entry

Description [info] HRDC domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=81;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=76;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.9155555; R2=0.0241654; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=252; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=149; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 53 in 53 different sequences
Number of true positive hits 53 in 53 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.15 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] HRDC
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
53 sequences

BLM_CAEEL   (O18017), BLM_CHICK   (Q9I920), BLM_DROME   (Q9VGI8), 
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UniProtKB/Swiss-Prot
False negative sequences
1 sequence

RP6L3_ARATH (A9LLI8)

		
PDB
[Detailed view]
34 PDB

1D8B; 1WUD; 1YT3; 2CPR; 2DGZ; 2E1E; 2E1F; 2HBJ; 2HBK; 2HBL; 2HBM; 2KV2;
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