PROSITE logo

PROSITE entry PS51012


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51012
Entry name [info] ABC_TM2
Accession [info] PS51012
Entry type [info] MATRIX
Date [info] 01-AUG-2004 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00692
Associated ProRule [info] PRU00442

Name and characterization of the entry

Description [info] ABC transporter integral membrane type-2 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=229;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=224;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=34.2108383; R2=0.0239656; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=-1114; N_SCORE=7.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-1156; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-24; D=-100; I=-100; B0=-1250; B1=-1500; E0=-1250; E1=-1500; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 45 in 45 different sequences
Number of true positive hits 45 in 45 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 125
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 26.47 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] V_Lesaux
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
45 sequences

ABCGK_DICDI (Q8T674), BEXB1_HAEIF (P19390), BEXB2_HAEIF (P19391), 
» more

UniProtKB/Swiss-Prot
False negative sequences
125 sequences

AB10G_ARATH (Q9MAH4), AB11G_ARATH (Q8RXN0), AB12G_ARATH (Q9C8K2), 
» more