PROSITE entry PS51147
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name [info] | PFTA |
Accession [info] | PS51147 |
Entry type [info] | MATRIX |
Date [info] |
01-OCT-2005 CREATED;
01-OCT-2013 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00703 |
Associated ProRule [info] | PRU00488 |
Name and characterization of the entry
Description [info] | Protein prenyltransferases alpha subunit repeat profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=35; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=35; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3351829; R2=0.0088513; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=900; N_SCORE=10.3; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=211; N_SCORE=4.2; MODE=1; TEXT='R?'; /DEFAULT: M0=-33; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='Y'; M= -16, -91, 44, -31, -26, -34, -73, -12, -38, 18, 24, 30, -23, -19, -9, -6, -31, -2, -84, 59; /M: SY='W'; M= -49, -92, 19, -41, 9, -89, -83, 11, -80, 39, -68, -23, 9, -79, 5, 36, -75, -18, 90, 3; /M: SY='E'; M= 20, -92, 45, 50, -43, -49, -74, -45, 24, -19, -81, 20, -10, 15, -9, -8, -43, -84, -94, 4; /M: SY='R'; M= -42, -95, 32, 46, -93, -42, -5, -42, 32, -58, -83, -2, -83, 18, 59, 13, -9, -88, -96, -22; /M: SY='E'; M= 22, -95, -20, 105, -97, -89, -74, -39, -63, -89, -86, -75, -76, -56, -72, -72, -76, -22, -98, -90; /M: SY='L'; M= -84, -87,-102, -95, 30,-103, -87, -4, -95, 83, 29, -99,-100, -90, -92, -93, -80, 2, -86, -66; /M: SY='N'; M= 15, -91, 3, 46, -31, -22, 18, -48, 4, -57, -82, 49, -4, 43, -17, 12, -26, -43, -98, -83; /M: SY='Y'; M= -87, -92, -98, -93, 73, -99, -77, -1, -8, 41, -61, -94,-100, -88, -85, -89, -82, -21, 59, 81; /M: SY='T'; M= -7, 60, -87, -86, -76, -91, -91, 17, -84, 17, -66, -78, -88, -86, -89, -15, 78, 38,-101, -81; /M: SY='E'; M= -6, -91, 30, 35, -86, -31, -18, -4, 28, -16, 18, 18, -84, 15, -17, 23, -7, -27, -96, -18; /M: SY='E'; M= -11, -94, 43, 58, -35, -86, -2, -39, 37, -18, -10, 15, -83, 26, 7, -16, -75, -42, -97, -82; /M: SY='M'; M= 29, 37, -93, -86, -5, -46, -87, 44, 18, 34, 52, -86, -92, -21, -82, -80, -41, 4, -91, -75; /M: SY='I'; M= -8, -90,-101, -96, 8,-101, -93, 81, -94, 55, 4, -94, -95, -90, -95, -88, -35, -47, -88, -70; /M: SY='E'; M= -78, -93, 17, 56, 10, -17, -74, -25, 19, 4, -13, 21, -84, 36, 14, -8, -35, -42, -93, -78; /M: SY='D'; M= -4, -89, 40, 15, -33, -86, -78, -21, 26, 26, -9, 23, -86, -3, -34, -3, 24, -10, -97, -80; /M: SY='N'; M= -27, -7, 83, -30, -7, -78, -69, -39, -72, -53, -86, 84, -89, -25, -79, -20, -70, -22,-103, 1; /M: SY='P'; M= 30, -9, -82, -15, 6, -82, -85, 5, -79, -50, -78, -1, 95, 1, -87, 0, -39, -26, -93, -85; /M: SY='K'; M= 3, -93, 9, 25, -42, -23, -9, -94, 68, -92, -83, -2, -83, 7, 31, 17, -74, -89, -90, 16; /M: SY='N'; M= -80, -5, 11, -74, 16, -73, 39, -38, -70, -92, -83, 114, -91, -71, -77, -12, -67, -45,-106, -79; /M: SY='Y'; M= -43, -96, -76, 14, 23, -89, -4, -34, -76, -76, -72, 48, -29, 30, -77, -77, -79, -82, -60, 112; /M: SY='H'; M= -41, -87, -74, -72, -89, -39, 82, -90, -73, -89, -81, -64, -82, 45, -75, 78, 49, -85, 44, -74; /M: SY='A'; M= 59, 18, -91, -86, -25, -27, -92, 37, -86, -29, -68, -84, -5, -85, -90, -7, -9, 48, -96, -82; /M: SY='W'; M= -93,-118,-120, -98, -57, -91,-117, -91, -89, -88, -91,-113, -97, -89, -93,-100,-105,-105, 181, -4; /M: SY='H'; M= -45, -90, -7, -72, -4, -78, 94, -42, -69, -88, -79, 81, -88, 24, -2, 26, 7, -89,-102, -16; /M: SY='Y'; M= -87, -5, -81, -80, 10, -92, 99, -35, -78, -75, -69, -22, -95, 34, -75, -80, -83, -84, -63, 110; /M: SY='R'; M= -84, -98, -84, -73, -85, -96, -10, -34, -48, 16, -73, -77, -94, -62, 111, -80, -34, -83, -93, -78; /M: SY='R'; M= -23, 18, -83, -72, 27, -90, -9, -83, 20, -30, -8, -76, -91, 47, 81, -20, -29, -23, -85, 15; /M: SY='W'; M= -49, -13, -38, -18, 46, 21, -90, -7, -15, -25, -77, -6, -92, 1, -85, -41, -31, -6, 128, 2; /M: SY='V'; M= -25, 17,-100, -95, 3,-100, -93, 50, -93, 49, -55, -94, -96, -91, -94, -86, -12, 56, -91, -16; /M: SY='L'; M= -8, -10, -99, -92, -29, -99, -10, 42, -92, 65, 1, -94, -97, -20, -91, -87, -78, 27, 17, -1; /M: SY='E'; M= -26, -93, -9, 44, 8, -13, -76, -22, 39, -53, -80, -27, -2, 43, 20, 9, 10, -41, -92, -80; /M: SY='N'; M= -22, -90, 2, 10, -33, -83, 44, -83, 5, 2, -10, 60, -87, 25, 30, 3, 14, -43, 7, -77; /M: SY='F'; M= -2, -88, 4, -42, 41, -46, -12, 14, -37, 40, 32, -7, -92, -20, -10, -11, 13, -66, -85, 9; /M: SY='P'; M= -26, -93, 9, 9, -30, 29, 31, -34, 33, -86, 31, -10, 42, -26, -34, 15, -14, -42, -92, 3; /M: SY='D'; M= -27, -91, 25, 18, -87, -4, 11, -78, 10, 2, -77, 14, 17, 1, 2, 19, 3, 15, 12, -82; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
Total number of hits | 144 in 27 different sequences |
Number of true positive hits | 144 in 27 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 1 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 99.31 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | PS_Langendijk_Genevaux |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 6 |
Feature key [info] | REPEAT |
Feature description [info] | PFTA |
Version [info] | 3 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
27 sequences
FNTA_ARATH (Q9LX33), FNTA_BOVIN (P29702), FNTA_CANAX (Q9Y765), FNTA_DICDI (Q54RT9), FNTA_HUMAN (P49354), FNTA_MOUSE (Q61239), FNTA_PEA(O24304), FNTA_RAT(Q04631), FNTA_SCHPO (O60052), FNTA_SOLLC (P93227), FNTA_YEAST (P29703), PGTA1_ARATH (Q8VYB7), PGTA2_ARATH (Q9FJ32), PGTA_BOVIN (Q5EA80), PGTA_CANAX (O93829), PGTA_DICDI (Q55DQ4), PGTA_HUMAN (Q92696), PGTA_MOUSE (Q9JHK4), PGTA_PIG(A5A779), PGTA_PONAB (Q5NVK5), PGTA_RAT(Q08602), PGTA_SCHPO (O94412), PGTA_YEAST (Q00618), PTAR1_DANRE (A3KPW7), PTAR1_HUMAN (Q7Z6K3), PTR1A_XENLA (Q0IHB3), PTR1B_XENLA (A1L3L1)» more
|
UniProtKB/Swiss-Prot False negative sequences |
1 sequence
RAM1_PETHY (A0A0M4FMK2) |
PDB [Detailed view] |
97 PDB
1D8D; 1D8E; 1DCE; 1FPP; 1FT1; 1FT2; 1JCQ; 1JCR; 1JCS; 1KZO; 1KZP; 1LD7; 1LD8; 1LTX; 1MZC; 1N4P; 1N4Q; 1N4R; 1N4S; 1N94; 1N95; 1N9A; 1NI1; 1NL4; 1O1R; 1O1S; 1O1T; 1O5M; 1QBQ; 1S63; 1S64; 1SA4; 1SA5; 1TN6; 1TN7; 1TN8; 1TNB; 1TNO; 1TNU; 1TNY; 1TNZ; 1X81; 2BED; 2F0Y; 2H6F; 2H6G; 2H6H; 2H6I; 2IEJ; 2R2L; 2ZIR; 2ZIS; 3C72; 3DPY; 3DRA; 3DSS; 3DST; 3DSU; 3DSV; 3DSW; 3DSX; 3E30; 3E32; 3E33; 3E34; 3E37; 3EU5; 3EUV; 3HXB; 3HXC; 3HXD; 3HXE; 3HXF; 3KSL; 3KSQ; 3PZ1; 3PZ2; 3PZ3; 3PZ4; 4EHM; 4GTM; 4GTO; 4GTP; 4GTQ; 4GTR; 4GTS; 4GTT; 4GTV; 4YDO; 6J6X; 6J74; 6J7F; 6J7X; 6O60; 7RN5; 7RNI; 8E9E » more |