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PROSITE entry PS51208


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51208
Entry name [info] AUTOTRANSPORTER
Accession [info] PS51208
Entry type [info] MATRIX
Date [info] 01-MAY-2006 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51208
Associated ProRule [info] PRU00556

Name and characterization of the entry

Description [info] Autotransporter beta-domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=273;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=268;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.4184549; R2=0.0173343; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=20001.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 0.1%';
/CUT_OFF: LEVEL=0; SCORE=426; H_SCORE=20001; N_SCORE=10.8; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=178; H_SCORE=20001; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B1=*; B0=-170; E1=*; MM=*; II=*;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 103 in 103 different sequences
Number of true positive hits 103 in 103 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] S_Ohji
Feature key [info] DOMAIN
Feature description [info] Autotransporter
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
103 sequences

ACRAC_CITRI (D2TV88), AG43_ECOLI  (P39180), AIDA_ECOLX  (Q03155), 
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PDB
[Detailed view]
27 PDB

1UYN; 1UYO; 2QOM; 3AEH; 3KVN; 3QQ2; 3SLJ; 3SLO; 3SLT; 4MEE; 7TSZ; 7TT0;
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