PROSITE entry PS51369
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General information about the entry
| Entry name [info] | TCP |
| Accession [info] | PS51369 |
| Entry type [info] | MATRIX |
| Date [info] |
01-FEB-2008 CREATED;
13-FEB-2019 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51369 |
| Associated ProRule [info] | PRU00701 |
Name and characterization of the entry
| Description [info] | TCP domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=59; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=54; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0454526; R2=0.0077427; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=6766.3911133; R2=1.6415800; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=705; H_SCORE=7924; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=447; H_SCORE=7500; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-56; D=-100; I=-100; B1=-1000; E1=-1000; MI=-250; MD=-250; IM=-250; DM=-250; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-250; BD=-250; /M: SY='R'; M= -52,-109, -92, -46,-111, 15, -95,-109, 2,-110,-102, -3, -15, -83, 28, -11, -1, -60,-113,-104; /M: SY='K'; M= -93,-107, -91, -77,-108,-104, -94,-100, 73,-104, -96, -83, -98, -77, -15, -61, 2, -19,-109, -98; /M: SY='D'; M=-100,-114, 93, -66,-121, -42, -87,-119, -89,-117,-116, -69,-100, -88, -97, -89, -91, -93,-135,-104; /M: SY='R'; M= -99,-116, -97, -85,-109, -32, -87,-116, -25,-109, -98, -89,-108, -75, 88, -94, -99,-110, -42, -96; /I: I=-30; MI=0; MD=-76; IM=0; DM=-76; /M: SY='H'; M=-103,-114, -86, -87,-101,-104, 125,-119, -91,-102, -87, -76,-103, -80, -85, -92,-101,-119,-137, -70; /I: I=-30; MI=0; MD=-76; IM=0; DM=-76; /M: SY='S'; M= -79, -97, -92, -92,-102, -90, -96, -67, -51, -58, -96, -81, -98, -87, -90, 67, 28, -23,-116, -98; /M: SY='K'; M= -96,-110, -15, -74,-113, -85, -91,-113, 83,-112,-100, -80, -96, -74, -59, -90, -91,-109,-107, -99; /M: SY='V'; M= -88,-102,-116,-111, -84,-118,-117, 43,-108, -60, -52,-110,-109,-109,-110,-101, -85, 63,-114, -92; /I: I=-22; MD=-56; /M: SY='C'; M= -36, 57,-114,-113, -74,-119, 6, -67, -53, -66, -70, -12,-126, -92, -2, -97, -90, -36, -65, -3; D=-22; /I: I=-22; MD=-56; /M: SY='T'; M= -96,-105, -17,-100,-112,-111,-109,-103,-100,-107,-104, -88,-102,-104, -93, -80, 79, -95,-132,-109; D=-22; /I: I=-22; MD=-56; /M: SY='A'; M= 45,-105,-103, -23,-114, -94,-107,-102,-101, -89, -58, -99, -89, -96,-106, 20, -89, -31,-119,-110; D=-22; /I: I=-22; MI=0; MD=-56; IM=0; DM=-56; /M: SY='Q'; M=-100,-122, -98, -86,-123, 2, 0,-121, 10,-112,-104, -91,-109, 60, 17, -94,-104,-119,-115,-103; D=-22; /I: I=-22; DM=-56; /M: SY='G'; M= -52,-101, 21, 14,-107, 73, -88,-112, -86,-108, -99, -23, -90, -82, -94, -74, -88,-106,-102,-100; /M: SY='P'; M= -71, -97, -94, -92, -20, 41, -66, -37, -92, 14, 25, -88, 52, -90, -97, -83, -49, -2, -96, -86; /M: SY='R'; M= -89,-105, -85, -73, -98, -99, -74,-105, -46, -97, -86, -78, -60, -62, 104, -83, -87, -98, -98, -84; /M: SY='D'; M= -19,-100, 87, -57,-107, 38, -80,-107, -81,-105,-101, -46, -89, -79, -89, -52, -81, -97,-112, -94; /M: SY='R'; M= -89,-105, -85, -73, -98, -95, -74,-105, -45, -97, -86, -78, -97, -62, 104, -75, -87, -98, -98, -84; /M: SY='R'; M= -86, -16, -83, -71, -95, -96, -72,-102, -44, -94, -84, -76, -95, -60, 105, -38, -84, -95, -96, -82; /M: SY='M'; M= -77, -89,-102, -96, -72,-102, -93, 49, -92, -54, 82, -93, -93, -89, -93, -87, -15, 55, -99, -76; /I: I=-26; MI=0; MD=-64; IM=0; DM=-64; /M: SY='R'; M= -86,-103, -83, -71, -95, -97, -72,-102, -43, -94, -83, -76, -95, -60, 106, -80, -55, -95, -95, -82; /M: SY='M'; M= -85, -89,-104, -95, -63,-103, -85, -22, -94, 69, 71, -99, -65, -87, -92, -77, -81, -38, -92, -72; /M: SY='S'; M= -49, -90, -78, -76, -97, -74, -81, -93, -78, -99, -90, -52, 67, -73, -85, 83, -61, -89,-101, -90; /M: SY='V'; M= 29, -87, -95, -91, -69, -91, -92, 25, -90, 32, -35, -27, -31, -87, -93, -27, -74, 32, -97, -80; /M: SY='P'; M= -33, -95, 32, 22, -89, 3, 9, -33, -33, -2, 16, -26, 39, 2, -81, -33, -39, -61, -99, -84; /M: SY='C'; M= -48, 82, -94, -93, -77, -96, -96, 43, -89, -36, -13, -84, -93, -91, -94, -46, 43, 32,-103, -83; /M: SY='A'; M= 84, -81, -85, -78, -94, -69, -86, -84, -78, -87, -80, -79, -24, -76, -28, -5, -39, -72, -95, -89; /M: SY='R'; M= 41, -92, -86, -78, -87, -68, -82, 33, -19, -69, -74, -27, -25, -71, 67, -74, -77, -55, -94, -83; /M: SY='R'; M= -11, -97, -44, -13, -97, -42, -74, -97, 55, -93, -83, -71, -60, 45, 63, -74, -79, -92, -6, -82; /M: SY='F'; M= -86, 7,-103, -99, 93,-101, -89, 21, -95, 1, -62, -94,-100,-100, -94, -84, -80, 12, -69, -48; /I: I=-22; MI=0; MD=-56; IM=0; DM=-56; /M: SY='F'; M= -58, -90,-100, -97, 101, -98, -76, -67, -92, -34, -67, -92,-102, -97, -89, -65, -83, -72, -55, 66; /M: SY='D'; M= -15, -95, 80, -10,-101, -19, -36, -97, -62, -95, -88, -14, -83, 59, -6, -9, -60, -93,-103, -84; /M: SY='L'; M= -38, -85, -99, -92, -58, -99, -86, 6, -92, 75, -48, -96, -66, -86, -91, -30, -76, -7, -89, -71; /M: SY='Q'; M= -35, -91, -70, -57, -97, -82, -52, -85, -60, -84, -74, -11, -80, 108, -62, -60, 55, -83, -92, -78; /M: SY='D'; M= -79, -94, 90, 21, -96, -12, -67, -98, -29, -94, -89, -23, -81, -61, 53, -70, -73, -94,-102, -57; /M: SY='M'; M= -70, 7, -72, 45, -76, -88, -68, -37, -6, -16, 100, -71, -81, -26, 50, -76, -33, -61, -89, -72; /M: SY='L'; M= -79, -81, -97, -89, -17, -98, -81, -44, -90, 87, -41, -96, -96, -83, -87, -80, -75, -23, -83, -64; /M: SY='G'; M= -63, -73, -37, -50, -20, 94, -80, -99, -42, -94, -85, -21, -81, -57, -23, -62, -79, -77, -85, -85; /M: SY='F'; M= -32, -53, -88, -86, 89, -91, 67, -60, -84, 3, -60, -76, -93, -84, -81, -79, -32, 7, -64, 40; /M: SY='D'; M= -75, -89, 96, -28, -94, -38, -65, -93, 36, -92, -87, 8, -78, -60, 18, -9, -67, -65,-102, -80; /M: SY='K'; M= -69, -86, -67, -17, -87, -78, -68, -87, 79, -86, -65, -60, -75, 48, 22, 22, 21, -82, 16, -63; /M: SY='P'; M= 58, -86, 49, -26, -92, -31, -76, -39, -72, -86, -79, -33, 79, -71, -80, -60, -67, -76, -92, -86; /M: SY='S'; M= -55, -54, -69, -71, -88, 38, -73, -89, -70, -91, -83, -47, -24, -11, -69, 93, -54, -82, -92, -80; /M: SY='K'; M= -41, -89, -60, 39, -92, -72, -34, -91, 85, -78, -78, 22, -75, 34, -17, -66, -69, -87, -87, -78; /M: SY='T'; M= 9, -74, -21, -71, -80, -76, -79, -70, -70, -75, -72, -20, -65, -73, -77, -6, 102, -18, -99, -78; /M: SY='I'; M= -72, -83, -96, -91, -22, -35, -92, 66, -89, 35, -48, -89, -90, -87, -90, -83, -69, 56, -88, -68; /M: SY='E'; M= -42, -7, 63, 78, -96, -23, -66, -95, -57, -90, -85, -60, -73, 33, -4, -21, -71, -89, -96, -82; /M: SY='W'; M= -86, -1,-112, -91, -53, -85,-113, -85, -83, -82, -85,-105, -91, -84, -77, -92, -39, -98, 174, -40; /M: SY='L'; M= -79, -81, -96, -88, -52, -98, -34, -44, -89, 89, -25, -95, -87, -82, -86, -89, -75, -46, -83, -65; /M: SY='L'; M= -78, -82, -95, -89, 40, -96, -80, 34, -88, 71, 28, -90, -72, -83, -86, -40, -73, -49, -77, -54; /M: SY='T'; M= -23, 22, -15, -7, -84, -72, -64, -59, 17, -80, -15, 45, -77, 33, 24, 13, 57, -38, -94, -77; /M: SY='Q'; M= 21, -68, -65, -42, -88, -73, 13, -82, 64, -81, -3, 37, -77, 68, -15, -21, -38, -40, -87, -74; /M: SY='S'; M= 61, 1, -72, -69, -82, -61, -74, -74, -70, -47, -73, -62, -76, -64, -74, 81, -43, -14, -89, -77; /M: SY='K'; M= -8, -85, -39, 52, -86, -54, -66, -85, 82, -35, -74, -21, -72, -5, 3, -39, -19, -77, -85, -76; /M: SY='P'; M= 33, -53, -10, -2, -84, -16, 21, -66, 10, -56, -73, -5, 65, -37, -46, 19, 2, -10, -9, -77; /M: SY='A'; M= 85, -73, -6, 4, -79, -32, -75, -78, -69, -79, -73, -66, -39, -64, -74, 31, -55, -66, -87, -80; /M: SY='I'; M= -48, -87, -93, -90, -60, -47, -92, 103, -83, -44, -3, -83, -42, -82, -17, -81, -68, -8, -83, -67; /M: SY='K'; M= -47, -85, 38, -14, -44, -79, -65, 31, 63, -20, -27, 17, -40, 13, -13, -10, -42, -17, -87, -72; /M: SY='E'; M= 25, -85, 15, 83, -37, -77, -12, -85, 12, -42, -76, -64, -37, -12, -2, -47, -12, -78, -88, -77; /M: SY='L'; M= 34, -77, -89, -82, -18, -84, -27, -8, -75, 77, -30, -86, -88, -77, -82, -71, -64, -27, -81, -64; /I: E1=0; IE=-250; DE=-250;» more |
Numerical results [info]
| Total number of hits | 42 in 42 different sequences |
| Number of true positive hits | 42 in 42 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | TCP |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
42 sequences
CYCLD_ANTCI (Q9SBV9), CYCLD_ANTLN (Q9SBV6), CYCLD_ANTMA (O49250), DICH_ANTMA (Q9SNW8), PCF1_ORYSJ (O23875), PCF2_ORYSI (A2YXQ1), PCF2_ORYSJ (Q6ZBH6), PCF3_ORYSJ (Q53PH2), PCF5_ORYSI (A2WM14), PCF5_ORYSJ (Q8LT07), PCF6_ORYSI (A2XMN1), PCF6_ORYSJ (Q10CE8), PCF7_ORYSI (A2WV68), PCF7_ORYSJ (Q8LT05), PCF8_ORYSI (A2ZMR9), PCF8_ORYSJ (Q2QM59), TB1_MAIZE (Q93WI2), TB1_ORYSJ (Q8LN68), TCP10_ARATH (O82277), TCP11_ARATH (Q9SJK7), TCP12_ARATH (A0AQW4), TCP13_ARATH (Q9S7W5), TCP14_ARATH (Q93Z00), TCP15_ARATH (Q9C9L2), TCP16_ARATH (Q9M1U4), TCP17_ARATH (Q9LEZ9), TCP18_ARATH (A1YKT1), TCP19_ARATH (Q9LT89), TCP1_ARATH (Q9FYG7), TCP20_ARATH (Q9LSD5), TCP21_ARATH (Q9FTA2), TCP22_ARATH (Q9C7G4), TCP23_ARATH (Q9LQF0), TCP24_ARATH (Q9C758), TCP2_ARATH (Q93V43), TCP3_ARATH (Q9MAH8), TCP4_ARATH (Q8LPR5), TCP5_ARATH (Q9FME3), TCP6_ARATH (Q9FLM6), TCP7_ARATH (Q9FMX2), TCP8_ARATH (Q9C518), TCP9_ARATH (O64647)» more
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| PDB [Detailed view] |
7 PDB
7VP1; 7VP2; 7VP3; 7VP4; 7VP5; 7VP6; 7VP7 |