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Entry: PS51372

General information about the entry

Entry name [info] PRD_2
Accession [info] PS51372
Entry type [info] MATRIX
Date [info] 01-MAR-2008 CREATED;
01-OCT-2013 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00562
Associated ProRule [info] PRU00704

Name and characterization of the entry

Description [info] PRD domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=108;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=108;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2832975; R2=0.0060064; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=1036; N_SCORE=8.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=719; N_SCORE=6.6; MODE=1; TEXT='R?';
/DEFAULT: M0=-14; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='E';  M=-17,-62, 20, 30,-15,-27, -8, 10, -8,  5,-32, 17,  0, 20,-36, -4, -8, -3,-42,  4;
/M: SY='I';  M=-20,-59, 20,  4, 23,-33,-32, 27,-13, -4, -2, 19,-40,  3,-25, -9,-11, 17,-61,-11;
/I:         I=-28; MD=-71;
/M: SY='P';  M=-14,-56, 35,  8,-40, -7,-31,-37,-11,-30,-34, 24, 41,-11,-29, 22, 20,-38,  2,-29; D=-28;
/I:         I=-28; MI=-71; MD=-71; IM=-71; DM=-71;
/M: SY='E';  M=-18,-65, 12, 30,-21,-23,  4,  2, 16, -4, -1, -9, 16, 14,-16, -4, -6, -9,-67, -3; D=-28;
/I:         I=-28; DM=-71;
/M: SY='E';  M=-12,-69, 32, 47,-30,-40,-13,-21, 31,-28,-33,  8,-25, 16,  8, -5,-10,-14,-47,-12;
/M: SY='I';  M=-19,-32, -3, -4,  7,-60,-14, 41,-33, 21, 14, -5,-46,-20,-46,-11, -1, 17,-39,  5;
/M: SY='I';  M= -8,-42,-37, -1,  2,-43,-23, 33,-21,  8, 14,-18,-41,  3,-15, -7, 25, 13,-41, 20;
/M: SY='E';  M= -7,-68, 25, 39,-25,-18,-11,-41, 24,-29,-26, 20, -9, 37,  4,  0, -8,-33,-46, -4;
/M: SY='I';  M= -9,-31,-15, -3, 19,-49,-27, 30, -9, 28, 15,-13,-55, -6,-27,-19, -8, 11,-58, -7;
/M: SY='I';  M=  2, -1,-50,-48,-14,-68,-68, 50,-58, 12, 21,-51,-54,-50,-63, -3, 22, 41,-66,-42;
/M: SY='E';  M=-21,-55, 14, 44,-23,-40,  7,-41, 33,-26,-22, 14,-54, 35, 20, -1, -6,-36,  0, -4;
/M: SY='E';  M= -7,-27, 30, 43,-56,-17,  4,-43, 33,-47,-28,  6,-53, 37, 18,  8,-11,-49,-51,-25;
/M: SY='I';  M= -9,-21,-74,-50, 20,-62,-63, 57,-47, 21, 34,-49,-69,-22,-38,-34,-12, 25,-16, -7;
/M: SY='I';  M=-25,-22,-74,-36,  9,-79,-67, 57,-53, 35, 23,-55,-71,-35,-35,-46,-10, 28,-60,-18;
/M: SY='E';  M= -5,-52, 20, 38,-33,-43, -8,-25, 19,-32,-29, 31,-23, 35,  7, 15,  5,-29,-49,-47;
/M: SY='Y';  M=-25,-42,  0, 16, -5,-51,  1, 21, 14,  1,-12, -6,-51, 15, 17, -4, -1, -4,-57, 24;
/M: SY='I';  M= 13,-23,-74,-65, 21,-44,-55, 45,-61, 19, 23,-46,-67,-48,-60,-30,-12, 41,-30, -5;
/M: SY='E';  M=-15,-34, -6, 65,-34,-15, -3,-18, 26,-33,-30,-12,-48, 31,  0, 17,-12,-46,-73,-39;
/M: SY='E';  M=-18,-61,  7, 41,-20,-38, 19,-39, 37,-36,-26, 12,-43, 33, 14, -1,  1,-46,-59, 26;
/M: SY='Q';  M=-19,-26,  3, 22,-17,-49, 29, -7, 28, -7,-10,  9,-57, 30,  7,  3, -2,-19,-30,  9;
/M: SY='Y';  M=-18,-25,-62,-35, 35,-62, -3,  1,-50, 43, 11,-23,-62,-44,-32,-15,  8,-17, 19, 49;
/M: SY='G';  M=-10,-15, 10,  5,-30, 39, 20,-60, 15,-34,-25, 35,-16, 23, -3, 11,-27,-46,-69,-27;
/I:         I=-18; MD=-45;
/M: SY='I';  M=-26,-33,-45, -3, -6,-43,-28, 42, -5, 12, 15,-38,-35,-11,-13,-27, -8, 24,-25, 12; D=-18;
/I:         I=-18; MD=-45;
/M: SY='D';  M=-41,-72, 18,  8,-72,-54,-22,-51, -7,-55,-75,  7,-15, -3,-40,-24, -9,-53,-99,-45; D=-18;
/I:         I=-18; MD=-45;
/M: SY='F';  M=-69,-86,-87,-65, 37,-87,-54,  4,-69,  3,-26,-61,-83,-54,-57,-79,-58,-26,-49, -4; D=-18;
/I:         I=-18; MI=0; MD=-45; IM=0; DM=-45;
/M: SY='D';  M=-22,-52, 33, 17,-19,-43, 10,-24, 33,-31,-43, 21,  6, 14,  7, 13, 13,-31,-69,-10;
/M: SY='F';  M=-29,-54,  4, 23, 26,-28, -9,  1,  3, 22, -4,  2,-25, -2,-16,-11, -9, -5,-57,  6;
/M: SY='D';  M=-19,-66, 54, 16,-35,-33, -6,-49,  3,-42,-50, 47,-16, 10,-18, 19, 25,-46,-74,-14;
/M: SY='D';  M=-24,-67, 53, 39,-36,-18,-11,-42,  1,-52,-57, 21,  3,  8,-15, 35, -1,-51,-75,-14;
/M: SY='E';  M=-21,-63,  9, 25, -5,-31,  3,  0,  9, -6,-11, 16, -3, 19,  0, 11, -8, -8,-62, 11;
/M: SY='L';  M= -9,-46,-13,-31, 28,-46,-22,  9,-25, 32, -1, 14,-64, 10,-36,  8,-11,  6,-32,  7;
/M: SY='Y';  M=-29,-59,-50,-35, 35,-44,  4, 10,  3, 14, 15,-39,-69,-11,-11,-30,-22, -1,-14, 75;
/M: SY='Q';  M=-17,-54,  5, 20, -2,-57, -9, 21,  3,  0, 14, 11,-50, 27, -9, -1, -4,  1,-60, 10;
/M: SY='R';  M= 14,-48, -1, -8,-28, 21,-19,-38,-10,-43,  6, 38,-29, 10, 45, 13, -5,-43,-68,-27;
/M: SY='L';  M=-47,-42,-85,-75, 49,-75,-68, 21,-69, 64, 24,-79,-76,-64,-66,-58,-42,  2,-33,-15;
/M: SY='I';  M= 12,-32,-66,-48,  8,-50,-55, 33,-31, 17, 27,-54, -9,-31,-31,  6, 16, 20,-36, 23;
/M: SY='T';  M= -9,-45, 27,-26,-22,-57,-21, 17,-28, 14, 23, -5,-35,-25,-21,  1, 39,  8,-62,  8;
/M: SY='H';  M=-57,-78,-46,-31,-26,-65,135,-43,-34,-55,-48,-22,-61,-20,-31,-41,-52,-56,-29, 28;
/M: SY='L';  M=-37, -1,-83,-73,  4,-82,-73, 50,-67, 56, 33,-69,-74,-54,-67,-57,-24, 15,-60,-36;
/M: SY='K';  M= 24,-17,-26,-16,-19,-36,  5,-25, 35,-16,-10,  6,-30, 21, 25, 25, -5,-27,-62,  0;
/M: SY='F';  M=-10, 28,-62,-31, 53,-24,-32,  9,-39,  2,  3,-21, 40,-14,-26,  0,-19,-15,-44, 33;
/M: SY='M';  M= 48,-27,-65,-38, 34,-52,-58,-14,-45, 22, 56,-52,-58,-48,-41,  5,  8,-11,-54,-17;
/M: SY='I';  M= -7, -5,-57,-60, 16,-65,-46, 54,-51, 27, 10,-70,-70,-39,-47,-37,-23, 27,-25, 30;
/M: SY='E';  M=-35,-45, 13, 44,-21,-24, 22,-37, 24,-33,-19, 25,-56, 39,  4, -6,-10,-35,-31, 30;
/M: SY='R';  M=-44,-78,-48,-34,-67,-54,-16,-50, 10,-50,-46,-17,-54, -4,105,-29,-47,-57,-66,-28;
/M: SY='I';  M= -6,-19,-53,-41, -9,-55,-33, 47,-34, 34, 35,-31,-47,-15,-54,-11, -9, 15,-40, -1;
/M: SY='K';  M=-21,-64,-27, 11,-21,-49,  5,  1, 47,  2, -7,  5,-41, 25, 33,-10,-18,-15,-12,-21;
/M: SY='Q';  M=-16,-51, -2, 14,  8,-39, 10,-26, 16, -7,-16, 27,-58, 33, 18, 11, -3,-38,-54, 28;
/M: SY='G';  M=-32,-73,  3, -9,-45, 66, 25,-70, 12,-58,-40, 43,-41, 13, -8,-15,-37,-55,-70,-31;
/M: SY='E';  M=-29,-21,-16, 38,-12,-31, 14, 19, 19, -7, 11,  5,-20, 19, -4,-22, -6, -9,-63, -1;
/I:         I=-14; MI=0; MD=-37; IM=0; DM=-37;
/M: SY='Q';  M=-18,-54,  6, 15,-23,-44, -3,  0, 11,-35,-38, 14, 15, 16,-17, 14, 14, -6,-68,  5; D=-14;
/I:         I=-14; DM=-37;
/M: SY='I';  M=-25,-44, -9,  3,-16,-44,-42, 44,-25, 13, 11,-18,  0,-10,-40, -6,  1, 11,-48,  1; D=-14;
/I:         I=-14; DM=-37;
/M: SY='D';  M=-14,-51, 30, 25,-40,-35, 10,-16, 18,-29, -1, 17, 19, 18,  5,  3,  7,-24,-42, -6;
/M: SY='N';  M=-18,-51, 13,  1,-13,-38,  5,-12,-11,-13, -8, 74,  3,-11,-36, -2, -4,-24,-64, 10;
/M: SY='P';  M=-21,-52, 13, 21, -1,-37, -8,-21, -3,-26,-23, -8, 76, -6,-24, 13,-14, -9,-71,-12;
/M: SY='L';  M=-25,-46, 10,  4, 18,-58,-29,  3,-22, 39, 30,  9,-16,-13,-30, -8,-18,-14,-56, 11;
/M: SY='L';  M=-15,-35,-24, 14, -7,-50,-33, 15, -4, 35,-11,-17,-22, -9,-16, -1,  7, -1,-36, 17;
/M: SY='W';  M= -9,-40, 28, 49,-29,-36, -5,-22,  8,-30,-37, 21,-22, 17, -1,  0, -1,-29, 52,-18;
/M: SY='E';  M=-30,-54, 16, 52, -6,-55,  2, -7, 13, -1, 11,  0,-35, 24,-17,-10,-12,-19,-42, 17;
/M: SY='I';  M=-29,-52,-29,-15,  2,-53,-34, 58,-27, 11, 21,-21,-49, -8,-29,-19,-15, 27,-60,  1;
/M: SY='K';  M=-23,-66, -8, 21,-44,-46,-30, -8, 63,-22, -6,-13,-29, 29, 19,  0, -7,-12,-42,-19;
/M: SY='Q';  M=-14,-63,  3, 30,-49,-39,  4,  4, 20,  0, -8,  7,-41, 37, 16,  6,  4,-17,-31,-37;
/M: SY='Q';  M=-29,-21,  2, 25,-13,-48,  6,-25, 32, -1, -9, 20,-43, 35, 20,  7, -6,-28,-41,-11;
/M: SY='Y';  M=-35,-32,  5, -2, 25,-61, 29,-47,-27,-37,-15, 16,-58,  0,-26, -7,-33,-48,-20, 99;
/M: SY='P';  M= -7,-55,-24,  1,-35,-37,-13,-39, 22,-46,-11, -7, 85,  2, -1, 12, 18,-40,-75,-27;
/M: SY='E';  M=-17,-50, 13, 41,-12,-53, -2,-26, 38,-12,-28,  5,-12, 19, 16, -3,-15,-14,-28, -9;
/M: SY='E';  M= 22,-27,-11, 63,-24,-54,-21,  7,-27,  7,-13,-41,-15, -7,-46,  7,-11,-11,-33,-26;
/M: SY='Y';  M=-32,-30,-68,-59, 74,-62, 12,-11,-52,-11,  0,-48,-77,-44,-42,-54,-36,-22, 14, 92;
/M: SY='E';  M=  6,-67, 13, 45,-39,-32, 13,-41, 22,-29,-24, 19,-12, 40,  9,  7, -4,-45,-39,-24;
/M: SY='I';  M= 14, 42,-54,-36, -5,-55,-52, 43,-20, 20, 11,-35,-65,-32,-48,-24, -6, 29,-29,-23;
/M: SY='A';  M= 57,-15,-61,-48,-52,  7,-53, 18,-50,-12, -9,-53,-53,-50,-58,  6, 19, 28,-69,-48;
/M: SY='K';  M=-23,-59,-12, 34,-45,-37,-18,-19, 49, -7, -8, -9,-54, 38, 25,  2,-15,-12,-20,-33;
/M: SY='K';  M=-24,-44,  4, 44,-35,-48,-10,-16, 49,-32,-20,  1,-54, 36, 25, -7,-19,-38, -9,  4;
/M: SY='I';  M= 33,-10,-67,-54, -3,-28,-36, 45,-56, 17, 22,-31,-61,-45,-56,  1, -9, 22,-63,-32;
/M: SY='F';  M=  9, 10,-37,-38, 25,-20,-24, 18, -3, 25,  1,-13,-63,-25,-18, -2,-25, 20,-36,-17;
/M: SY='E';  M=  7,-55, 26, 36,-36,-32, -2,-40, 33,-45,-19, 11,-33, 34, 15, 10,  2,-41,-43,-25;
/M: SY='Y';  M=-18,-62,  0,  5, 12,-38,  9, 12, 10,  2,  5, -4, 22, 10, -3,-20,-20, -1, -1, 26;
/M: SY='I';  M=-39,-50,-77,-38,  5,-74,-43, 56,-52, 45, 27,-65,-72,-51,-65,-51,-20, 25,-25,-15;
/M: SY='E';  M=-16,-54, -7, 69, -1,-15,-11,-43, 18,-28,-29, 10, -9, 20,-11,  6,-13,-47,-51,-21;
/I:         I=-18; MD=-45;
/M: SY='K';  M=-12,-72,  5, 40,-65,-25,-22,-46, 41,-39,-29,  9,-22, 34,  9,  8, -6,-43,-77,-38; D=-18;
/I:         I=-18; MD=-45;
/M: SY='K';  M=-14,-58,-15, 23,-20,-47, -8,-31, 25, -9,-29, -4,-54, 16, 22, -8,  6,-19,-34,  7; D=-18;
/I:         I=-18; MI=0; MD=-45; IM=0; DM=-45;
/M: SY='Y';  M=-44,-37,-69,-43, 46,-52,-24, -8,-39, 29, 13,-44,-62,-55,-47,-41, -8,-18, -5, 60; D=-18;
/I:         I=-18; DM=-45;
/M: SY='N';  M=-22,-49, 34, -7,-53, 39, 20,-58,  3,-54,-62, 43,-20, 18,-21, -4,-27,-52,-78,-42; D=-18;
/I:         I=-18; DM=-45;
/M: SY='I';  M=-34,-16,-38,-24, 10,-60,-30, 45, -8, 12, 11,-33,-47,-26,-15,-30,-17, 27,  9, 18; D=-18;
/I:         I=-18; DM=-45;
/M: SY='E';  M=-16,-37, 17, 33,-49,-52, 17,-27, 32,-40,-50,  9, 22, 18,  3, 16, 20,-28,-73,-22;
/M: SY='I';  M=-47,-34,-75,-68, 40,-84,-55, 51,-68, 44, 21,-78,-43,-66,-69,-59,-36, 29,-39,-24;
/M: SY='P';  M=-17,-45, -6,-27,-63,-34,  6,-51,-32,-57,-58, 28, 90,-14,-42, 40, 21,-49,-81,-40;
/M: SY='E';  M=-23,-56, 54, 63,-56,-42,-13,-23, 13,-38,-55, -1,  6, 12,-19, -8,-25,-29,-82,-38;
/M: SY='D';  M=  8,-41, 65, 45,-62,-26,-11,-37,-20,-55,-19, 13,-32,  0,-41, 21,-16,-33,-53,-23;
/M: SY='E';  M=-36,-93, 17,105,-55,-64,-35,-77,-21,-69,-53,-30,-47, -5,-35,-33,-42,-68,-87,-64;
/M: SY='I';  M=  9,-22,-65,-23,-25,-68,-52, 52, -5, 13,  1,-49,-64,  0, -5,-29, -7, 30,-13,-20;
/M: SY='G';  M= 28,  2,-30,-40,-16, 45,-46,  6,-37, -6,  4,-25,-59,-37,-48, 10, -2, -1,-27,  6;
/M: SY='Y';  M=-39,-62,-64,-51, 61,-75,  2,-26,-48, -3,-29,-13,-68,-49,-47,-38,-39,-38, 13,103;
/M: SY='I';  M=-52,-49,-85,-76,  7,-87,-75, 61,-69, 55, 21,-82,-76,-67,-69,-66,-45, 14,-39,-42;
/M: SY='T';  M= 51,-11,-51,-44,-35,-34,-31,-11,-39,-11,  1,-38,-52,-42,-53, 14, 54,  8,-60, 12;
/M: SY='M';  M=-21,-52,-20,-37, -7,-58,-53, 36,-39, 46, 62,-27,-60, -8,-53,-50,-21,  5,-61,-23;
/M: SY='H';  M=-48,-70,-57,-43, 11,-68,115,-12,-40, -6,-19,-13,-39,-10,-33,-37,-42,-42,-23, 57;
/M: SY='F';  M=-54,-53,-84,-76, 66,-84,-53, 52,-71, 39, -2,-79,-78,-70,-70,-59,-34, 12,-16,-13;
/M: SY='Q';  M= 10,-28,-32, 13,-28, 13, 16,  7,  6,  6,  4,-14,-59, 20,-12,-13,-25,  7,-48,  1;
/M: SY='S';  M= 20,-57,-28,-15,-53, 23,-29,-45, -2,-43,-18, 30,-37,-19, 34, 42,  3,-17,-70,-36;
/M: SY='A';  M= 37,-24,-35,-13,  1,-27,-15, -3,-19, 10, -4,  4,-45,-19,-32, 18, -4, -3, 21,  9;
/I:         I=-30; MD=-77;
/M: SY='Q';  M=-18,-43,-44,-15,-19,-28,-20, 15, 11, 15, 11, 10,-41, 21, 18, -3, -5, -3,-20, -1; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='E';  M=-21,-55,  3, 42,-21,-31,-10,-13, 13,-16, -1,  4,-12, 16,  4,  5, -8,-14,-33, -1;
/M: SY='R';  M=-21,-71, 12, 14,-39,-19, -9,-43, 19,-40,-19, 26,-13, 25, 42,  3,-18,-23,-51,-17;
/M: SY='Q';  M=-20,-54, -5, 15,-26,-19, -1,-24,  4,-13,-11, 20,-17, 33, -7, 16, -5,-22,-11,  1;
/M: SY='K';  M=-24,-47, 17,  6,-39,-14,-18,-31, 27,-35,-31, 19, -5, 23,  6,  8, -2,-44,-76,-25;
/M: SY='Q';  M= -6,-61,  3, 16,-30,-38,-18,-29, 10,-24, -7, 17,-28, 17, -8,  5, -1,-37,-22,-23;
/M: SY='N';  M=-23,-44,-13, 10,-40,-36, 18,-19,  3,-25, -2, 20,-27,  1, -9,  9, -6,-25,-38,-32;
/I:         E1=0; IE=-255; DE=-255;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 75 in 39 different sequences
Number of true positive hits 75 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 2
Feature key [info] DOMAIN
Feature description [info] PRD
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
39 sequences

ACPA_BACAN  (Q44643    ), ACPB_BACAN  (Q9RMX9    ), ARBG_DICCH  (P26211    ), 
ATXA_BACAN  (Q44636    ), BGLG_ECOLI  (P11989    ), CSIE_ECOLI  (P54901    ), 
DGAR_SALT1  (D0ZLR9    ), GLCT_BACSU  (O31691    ), GLCT_STAA1  (A7X215    ), 
GLCT_STAA2  (A6U1H8    ), GLCT_STAA3  (Q2FH78    ), GLCT_STAA8  (Q2G2N4    ), 
GLCT_STAA9  (A5ISP0    ), GLCT_STAAB  (Q2YXW0    ), GLCT_STAAC  (Q5HG62    ), 
GLCT_STAAE  (A6QGR0    ), GLCT_STAAM  (Q99UC2    ), GLCT_STAAN  (Q7A5S2    ), 
GLCT_STAAR  (Q6GH48    ), GLCT_STAAS  (Q6G9K2    ), GLCT_STAAT  (A8Z228    ), 
GLCT_STAAW  (Q7A0Y7    ), GLCT_STACT  (O33618    ), GLCT_STAEP  (Q8VRG9    ), 
GLCT_STAEQ  (Q5HPI3    ), GLCT_STAES  (Q7CCK6    ), GLCT_STAHJ  (Q4L665    ), 
GLCT_STAS1  (Q49XF1    ), LACT_LACCA  (P24401    ), LEVR_BACSU  (P23914    ), 
LICR_BACSU  (P46321    ), LICT_BACSU  (P39805    ), MANR_BACSU  (O31644    ), 
MTLR_BACSU  (P96574    ), MTLR_STRMU  (Q02425    ), SACT_BACSU  (P26212    ), 
SACY_BACSU  (P15401    ), Y487_HAEIN  (P44003    ), YHFY_ECOLI  (P45551    )
» more

PDB
[Detailed view]
6 PDB

1H99; 1TLV; 3GWH; 3RIO; 3UFE; 4R6I

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