PROSITE logo

PROSITE entry PS51513


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] FFD
Accession [info] PS51513
Entry type [info] MATRIX
Date [info] 01-MAY-2010 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51512
Associated ProRule [info] PRU00846

Name and characterization of the entry

Description [info] FFD box profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=17;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=16;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8480844; R2=0.0086703; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1105.6815186; R2=0.2011173; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=941; H_SCORE=1295; N_SCORE=11.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=422; H_SCORE=1191; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-86; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='P';  M=   1,  16,-142, -40,-148, -25, -46,   1,  36, -28,-136, -69,  77, -34, -82, -16,  38,  16,-157,-146;
/M: SY='F';  M=  52, -10,-147,-145,  53,   5, -74, -86, -31, -52, -22, -10, -44,-142, -66,   2, -19,  35,-142,  33;
/M: SY='Y';  M=-149,-160,  -9,-148, -98,-155,-115,-135,-142,-132,-128,-147,-160,-138,-140,-143,-143,-140,-106, 143;
/M: SY='N';  M= -95,-150,  75, -66,-153,-138,  32,-144,   5,-151,-144,  89,-147,   2,-134,   0, -49,  21,-170,-144;
/M: SY='K';  M=-141,-157,-134, -14,-157,-148,-136,-157, 104,-156,-144,-129,  49,-120,  40,-136,-136,-153,-151,-145;
/M: SY='D';  M= -20,-150,  70, -24,-157, -64,-134,-153,  39,-154,-147,  -7,-142,  49, -64,  57,  29,-148,-162,-145;
/I:         I=-30; MD=-77;
/M: SY='K';  M= -72,-172,-157, -76,-176,-163,-160, -47,  64,-174,-166,-149,-164, -45, -26,  49, -16,-167,-177,-166; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='S';  M=-126, -23,  61, -42,-156,  12,-135,-156, -30,-157,-151,   1,-143,-128,-139,  96,-121,-149,-163,-146;
/M: SY='F';  M=-153,-149,-166,-161, 131,-160,-145,-126,-156,-118,-128,-154,-164,-167,-153,-152,-145,-132,-118, -96;
/M: SY='F';  M=-153,-149,-164,-160, 129,-160,-142,-127,-155,-119,-128,-154,-163,-165,-152,-151,-145,-132,-117,  28;
/M: SY='D';  M=-145,-159, 128,-108,-166,-142,-131,-164,-132,-162,-161,-113,-144,-132,-141,-133,-135,-161,-181,-148;
/M: SY='N';  M= -63,-144, -12,  22,-153,-133,-131,-150, -35,-154,-146,  90,-143,-127, -81,  68,  50,-146,-165,-146;
/M: SY='I';  M=-143,-152,-163,-159,-123,-166,-154,  97,-155,  54,  37,-156,-154,-150,-156,-152,-138,-103,-150,-132;
/M: SY='S';  M=-120,-141,-133,-135,-151,-129,-137,-149,-134,-153,-147,-122,-141,-127,-139, 114,  34,-141,-161,-144;
/M: SY='C';  M=-131, 119,-143,-143,-147,-142,  29,-149,-139,-148,-144,-133,   9,-139,  -3,  74,   4, -33,-163,  -7;
/M: SY='E';  M=-135,-153,  53,  78,-159,  15, -25,-159,-127,-157,-150,  58,-140,  -3,-135,  25, -24,-154,-163,-148;
/M: SY='A';  M=  57,-145,  -3,   1,-148,-137,-141, -48, -27, -32,  27, -57,  12,   5,-140,  37,  48, -28,-157,-144;
/I:         E1=0; IE=-255; DE=-255;
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 18 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] MOTIF
Feature description [info] FFD box
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

DCP5L_ARATH (Q9FH77), DCP5_ARATH  (Q9C658), L14AA_XENLA (A0A8M2), 
L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), L14BB_XENLA (Q498K9), 
LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), LS14A_MOUSE (Q8K2F8), 
LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), LS14B_HUMAN (Q9BX40), 
LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), LS14H_CAEEL (Q9XW17), 
LSM14_PLEWA (Q9YH12), SCD6_YEAST  (P45978), SUM2_SCHPO  (Q9HGL3)
» more

PDB
[Detailed view]
1 PDB

6F9S