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PROSITE entry PS51513

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General information about the entry

Entry name [info]	FFD
Accession [info]	PS51513
Entry type [info]	MATRIX
Date [info]	01-MAY-2010 CREATED; 10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC51512
Associated ProRule [info]	PRU00846

Name and characterization of the entry

Description [info]

FFD box profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=17;
/DISJOINT: DEFINITION=PROTECT; N1=2; N2=16;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8480844; R2=0.0086703; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1105.6815186; R2=0.2011173; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=941; H_SCORE=1295; N_SCORE=11.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=422; H_SCORE=1191; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-86; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='P';  M=   1,  16,-142, -40,-148, -25, -46,   1,  36, -28,-136, -69,  77, -34, -82, -16,  38,  16,-157,-146;
/M: SY='F';  M=  52, -10,-147,-145,  53,   5, -74, -86, -31, -52, -22, -10, -44,-142, -66,   2, -19,  35,-142,  33;
/M: SY='Y';  M=-149,-160,  -9,-148, -98,-155,-115,-135,-142,-132,-128,-147,-160,-138,-140,-143,-143,-140,-106, 143;
/M: SY='N';  M= -95,-150,  75, -66,-153,-138,  32,-144,   5,-151,-144,  89,-147,   2,-134,   0, -49,  21,-170,-144;
/M: SY='K';  M=-141,-157,-134, -14,-157,-148,-136,-157, 104,-156,-144,-129,  49,-120,  40,-136,-136,-153,-151,-145;
/M: SY='D';  M= -20,-150,  70, -24,-157, -64,-134,-153,  39,-154,-147,  -7,-142,  49, -64,  57,  29,-148,-162,-145;
/I:         I=-30; MD=-77;
/M: SY='K';  M= -72,-172,-157, -76,-176,-163,-160, -47,  64,-174,-166,-149,-164, -45, -26,  49, -16,-167,-177,-166; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='S';  M=-126, -23,  61, -42,-156,  12,-135,-156, -30,-157,-151,   1,-143,-128,-139,  96,-121,-149,-163,-146;
/M: SY='F';  M=-153,-149,-166,-161, 131,-160,-145,-126,-156,-118,-128,-154,-164,-167,-153,-152,-145,-132,-118, -96;
/M: SY='F';  M=-153,-149,-164,-160, 129,-160,-142,-127,-155,-119,-128,-154,-163,-165,-152,-151,-145,-132,-117,  28;
/M: SY='D';  M=-145,-159, 128,-108,-166,-142,-131,-164,-132,-162,-161,-113,-144,-132,-141,-133,-135,-161,-181,-148;
/M: SY='N';  M= -63,-144, -12,  22,-153,-133,-131,-150, -35,-154,-146,  90,-143,-127, -81,  68,  50,-146,-165,-146;
/M: SY='I';  M=-143,-152,-163,-159,-123,-166,-154,  97,-155,  54,  37,-156,-154,-150,-156,-152,-138,-103,-150,-132;
/M: SY='S';  M=-120,-141,-133,-135,-151,-129,-137,-149,-134,-153,-147,-122,-141,-127,-139, 114,  34,-141,-161,-144;
/M: SY='C';  M=-131, 119,-143,-143,-147,-142,  29,-149,-139,-148,-144,-133,   9,-139,  -3,  74,   4, -33,-163,  -7;
/M: SY='E';  M=-135,-153,  53,  78,-159,  15, -25,-159,-127,-157,-150,  58,-140,  -3,-135,  25, -24,-154,-163,-148;
/M: SY='A';  M=  57,-145,  -3,   1,-148,-137,-141, -48, -27, -32,  27, -57,  12,   5,-140,  37,  48, -28,-157,-144;
/I:         E1=0; IE=-255; DE=-255;

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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	18 in 18 different sequences
Number of true positive hits	18 in 18 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	MOTIF
Feature description [info]	FFD box
Version [info]	4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

18 sequences

DCP5L_ARATH (Q9FH77), DCP5_ARATH  (Q9C658), L14AA_XENLA (A0A8M2),

L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), L14BB_XENLA (Q498K9), 
LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), LS14A_MOUSE (Q8K2F8), 
LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), LS14B_HUMAN (Q9BX40), 
LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), LS14H_CAEEL (Q9XW17), 
LSM14_PLEWA (Q9YH12), SCD6_YEAST  (P45978), SUM2_SCHPO  (Q9HGL3)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

1 PDB

6F9S