PROSITE entry PS51536
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General information about the entry
Entry name [info] | TFG |
Accession [info] | PS51536 |
Entry type [info] | MATRIX |
Date [info] |
01-MAY-2010 CREATED;
10-MAY-2017 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51512 |
Associated ProRule [info] | PRU00869 |
Name and characterization of the entry
Description [info] | TFG box profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=21; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=19; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3437343; R2=0.0096206; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1793.7653809; R2=0.3868313; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=900; H_SCORE=2142; N_SCORE=11.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=433; H_SCORE=1961; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-103; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='N'; M= -1,-252, 40, -20, -40, 16, 19, -58, 10,-251, -34, 58, -8, 49, 22, -9, -3,-135,-258,-242; /M: SY='Q'; M= -55,-254, -5, -2, -88, 56, -32, -21, 12, -23, -10, 0, 0, 57, 25, -23, -2,-245,-254,-244; /M: SY='R'; M= -49,-256,-236,-229, -32, -20, 45,-254, 32, -76,-241, 14, 42, 26, 87, 0, -96,-251,-254,-239; /M: SY='M'; M= 8,-248, -11, 13, -59, -21,-237, -18, -28, -38, 69, 25, -6, 40,-237, 21, 42, -21, -10,-240; /M: SY='W'; M= -38, -51, 43, 2, -55, -42,-234, -70, -35, -46,-241, 30,-246, 61, 64, -19, 19,-248, 74,-237; /M: SY='W'; M= -58,-258,-250,-240, 64, -93, 23,-244, -27, -16,-236, -24, -61, -27, 85,-243,-245,-246, 115, -35; /M: SY='R'; M= 40,-250, -44, 30,-250, -2, -21,-249, -70,-247, 33, 14, 19, 3, 45, 42, -68,-244,-253, -2; /M: SY='E'; M= -24,-255, 23, 86,-258, -7, -31,-255, 45,-253,-246, -19,-238, 41, -93, -28, -55, -46,-257,-246; /M: SY='Q'; M= -58,-256,-221, 87,-255,-248, 43,-249,-221, -39, 31, 13,-240, 89, -8,-232,-238, -74,-256,-240; /M: SY='R'; M=-241,-256,-237, -17,-250,-250,-230, -69, 40,-142, 63, 9,-248, -9, 103, -23,-106,-246,-253,-239; /M: SY='R'; M= -31,-254, -72, 44,-251,-247, -37, -44, 58, -46, 26, -1,-244, 38, 66, -4, -41,-109,-254,-241; /M: SY='L'; M= -27,-250,-250,-241,-232,-255, -61, 42, 12, 52, 31,-243, -60, 27, 35,-240, 19, -5, -35,-235; /M: SY='N'; M=-241,-250, 92,-222,-256,-235,-226,-249,-229,-256,-250, 108,-248,-230,-238,-227,-228, -2,-276,-248; /M: SY='M'; M= -2,-246,-246,-240,-107, -97, -67, 19, 11, 5, 79,-238, 19, 9,-239, -6, 64, 6,-255,-238; /M: SY='E'; M= 1,-255, 52, 105,-258,-247,-232,-256,-223, -46, -38, -27,-236, -49,-232, -71,-236,-250,-260,-249; /M: SY='T'; M= 6,-238,-235,-238,-245,-243,-245,-236,-235,-241,-237,-225,-237,-239,-243,-213, 124,-228,-264,-243; /M: SY='F'; M=-253,-249,-265,-261, 133,-260,-245,-226,-256,-218,-228,-254,-263,-267,-253,-251,-245,-231,-218,-196; /M: SY='G'; M= -25,-253,-242,-252,-259, 109,-248,-264,-247,-261,-251,-228,-245,-244,-254,-226,-244, -70,-251,-254; /M: SY='Q'; M= 11,-249, 22, 16, -24, -56, -29, -11, -27, -67, -49, 41, -79, 55, -71, 27, 12, 22, -10,-240; /M: SY='F'; M= 22,-247, -67, 2, 41, 14,-239, -44,-238, -26, 39, 36, 7, 8,-243, 18, 31, -13,-250,-234; /M: SY='S'; M= 42,-245, -31,-239, 22, 16, -53, -58,-239, -53, 32, -36, 22, -57, -77, 67, -9, -42,-250, -24; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
Total number of hits | 18 in 18 different sequences |
Number of true positive hits | 18 in 18 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Feature key [info] | MOTIF |
Feature description [info] | TFG box |
Version [info] | 4 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
18 sequences
DCP5L_ARATH (Q9FH77), DCP5_ARATH (Q9C658), L14AA_XENLA (A0A8M2), L14AB_XENLA (Q8AVJ2), L14BA_XENLA (Q68FI1), L14BB_XENLA (Q498K9), LS14A_BOVIN (Q3MHF8), LS14A_HUMAN (Q8ND56), LS14A_MOUSE (Q8K2F8), LS14A_PONAB (Q5R4R4), LS14A_XENTR (Q6NVR8), LS14B_HUMAN (Q9BX40), LS14B_MOUSE (Q8CGC4), LS14B_XENTR (Q566L7), LS14H_CAEEL (Q9XW17), LSM14_PLEWA (Q9YH12), SCD6_YEAST (P45978), SUM2_SCHPO (Q9HGL3)» more
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PDB [Detailed view] |
1 PDB
6F9S |