PROSITE entry PS51644
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General information about the entry
| Entry name [info] | HTH_OST |
| Accession [info] | PS51644 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2012 CREATED;
01-MAY-2012 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51644 |
| Associated ProRule [info] | PRU00975 |
Name and characterization of the entry
| Description [info] | OST-type HTH domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=74; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=74; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0157390; R2=0.0071836; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=1098; N_SCORE=9.9; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=653; N_SCORE=6.7; MODE=1; TEXT='RR'; /DEFAULT: M0=-33; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='S'; M= 7, -38, 25, 11, -42, -49, -47, 6, -4, -14, -17, -6, 11, 26, -8, 35, -12, -1, -66, -64; /M: SY='L'; M= -30, -33, 28, -44, -37, -89,-142, 11, 11, 39, 10, -9, 38, -25, 3, -9, -14, -6, -61, -72; /M: SY='E'; M= -6, -75, 26, 48, -80, -66, -47, -49, 29,-104, -36, 5, 15, 16, 27, 24, -11, -30, -61, -22; /M: SY='E'; M= -4, -64, 37, 47, -33, -60, -25, -16, 19, -10, -35, -23, -18, 27, 16, -24, -1, -20, -22, -35; /M: SY='L'; M= 3, 0, -97, -80, 48,-157,-151, 26,-152, 54, -56,-154, -2,-150,-111, -93, -46, 44, -64, -57; /M: SY='K'; M= 8, -54, -48, 8, -55, -57, -10, 11, 47, -7, -13,-136, -41, 21, 26, -2, 9, 12, -37,-103; /M: SY='R'; M= 17, -13, 6, 23, -33, -41, -20, -50, 31, -37, -35, 22, -6, 22, 39, 16, -13, -83,-155, -42; /M: SY='Q'; M= -3, -56, -6, 39, -17, -52, -18, -10, -2, 28, 20, -13,-147, 44, 17, -96, -13, -10, -34, -25; /M: SY='I'; M= -47, -46,-161,-155, -31,-162,-153, 67,-110, 59, 24,-155,-156,-150, -74,-148, -28, 41,-152,-133; /M: SY='R'; M= -19, -8, -52, 0, -57, -72, 11, -8, 30, 5, -52, -48, -75, 27, 63, -38, -5, 10,-151, 5; /M: SY='E'; M= 18,-151, 27, 44, -85, -50, -44,-102, 37, -45, -35, 7, -77, 30, 14, 33, -11, -98, -69, -66; /M: SY='L'; M= 32, -11, -95, -88, -45, -78,-150, 47,-150, 59, -7, -66,-153, -77,-151, -23, -27, 21,-153,-136; /M: SY='L'; M= -42, -15,-159,-109, -22,-160, -86, 41,-110, 72, 0,-155, -95,-148, -89, -47, -35, 35, -18, -55; /M: SY='E'; M= -13, -25, 24, 32, -81, -42, -33, -11, 27, -20, -8, 8,-103, 27, 23, 20, 6, -9, -39,-142; /I: I=-25; MI=0; MD=-63; IM=0; DM=-63; /M: SY='S'; M= 20, -45, -4, 25, -87, -38, -19, -65, 19, -32, 6, -7, -83, 28, -11, 59, -4, -54, -33, -27; /M: SY='H'; M= 14, -7, 42, 6, -15, -34, 62,-100, -15, -92, -43, 36,-147, 9, 6, 12, -30, -78, -18, 50; /M: SY='P'; M= -27, -31, 49, 29,-157, -11, -5,-154, 30,-125, -45, 8, 69, -3, -24, 20, -39, -81,-159, -62; /M: SY='N'; M= -32, -38, 55, 29,-153, 32, -6,-120, -21, -85, -87, 55, -48, -2, -15, 36, -37,-152,-159, -7; /M: SY='G'; M= -63, 14, -52, -49, -64, 86, -60,-111, -6,-124,-147, -87, 32, -21, -14, -6, -19, -40, -4, -99; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='W'; M= -48, -55,-160,-153, -19,-121,-153, 47,-150, 30, 49,-154, -65, -77,-152, -41, -12, 52, 100, -10; /M: SY='W'; M= 24, -48, -14, -43, 0, -54, -24, -69, -36, 7, -85, 18, 46, -23, -22, 27, 19, -63, 84, -23; /M: SY='L'; M= 5, 7, -95, -86, 7, -60, 2, 16, -75, 59, 41, -9, -24, -57, -78, -11,-136, 9,-149, -9; /M: SY='S'; M= 11, -85, -11, -27, -25, 11, 25, -63, -27, 15, -51, -13, -44, -49, -42, 72, -15, -58, -28, -60; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='Q'; M= 14, -37, 25, 33,-105, -31, -2, -49, 19, -41, 5, 15, -59, 48, 24, 11, -16, -41, -78, -50; /M: SY='L'; M= -81, -65,-117,-156, 53,-162,-151, 39,-155, 68, -83,-157,-159,-152,-154,-109, -84, 41,-144, -64; /M: SY='P'; M= -27, -48, -46, 8,-110, 51, -35, -33, 36, -25, -41, -26, 62, -7, -1, -25, -37, -48, -57, -67; /M: SY='Q'; M= -4, -92, 17, 6, -70, -22, -61, -73, 23, -65, -65, 38, -7, 59, 9, 40, 7, -55,-157, -62; /M: SY='D'; M= 13, -11, 30, 27, -21,-119, 23, -7, -29, 18, 22, -17,-148, 21, 2, -34, -8, -23, -18, 25; /M: SY='Y'; M= -94,-153,-155,-154, 46,-158, -21, 29,-149, 35, 40, -75,-159,-145,-147,-147,-106, -39, -62, 106; /M: SY='K'; M= -27, -43, -99, 8, -35, -32, 26, -18, 46, -12, -11, -4,-119, 37, 45, 12, -7, -30,-151, -2; /M: SY='K'; M= -17,-153, 13, 21,-101, -84, -7,-112, 62, -47, -25, 30,-144, 32, 50, 1, -44, -62, -15, -55; /M: SY='K'; M= -20, -15,-139, -2, -44,-116, 37, -8, 44, 14, 35, -13,-147, 30, 36, -46, 11, -9, -31, -35; /M: SY='Y'; M= -65, -13, 21, -11, 68,-110, 29, -28, -17, -45, -5, -22,-107, 7, -30, -19, 3, -40, -35, 78; /M: SY='P'; M= -45,-155, -60, -63,-112, 66, -16, -87, 11,-109, -90, 6, 78, -37, -22, 17, -46, -64,-155, -69; /I: I=-26; MD=-67; /M: SY='E'; M= -61, -17, -59, 34, -39, -77, 17,-112, 18, -80, -62, -51, -80, -3, 28, -37, -37, -33,-167, 17; D=-26; /I: I=-26; MI=0; MD=-67; IM=0; DM=-67; /M: SY='D'; M= -18, -86, 55, 10, -82, -11, -2, -71, -13, -90,-148, -2, 55, 28, -52, 25, -6, -38, -17,-148; D=-26; /I: I=-26; DM=-67; /M: SY='F'; M= -83, 8,-163,-157, 95,-161,-148, 16,-155, 57, -2,-100, -81,-156,-113,-152,-142, -33, 17,-113; /M: SY='D'; M= -67, -15, 82, -22,-156, -64, 4, -97, -17, -84, -36, 40, 63, -27, 3, 8, -85, -48,-164, -39; /M: SY='P'; M= -20, -43, -97, 23, 11,-100, 19, -29, -65, -1, -46, -67, 74, -25, -87, -1, -15, 27, -19, 36; /M: SY='R'; M= -7, -53, -3, -19, -99, -25, 29, -82, 37, -76, -43, -24, -98, 17, 76, 21, -6, -46,-155, -28; /M: SY='N'; M= -8,-151, 41, 13, -37, -20, 6, -44, 6, -39, -87, 56, -56, 20, -5, 6, 2, -11, 29, -15; /I: I=-19; MD=-49; /M: SY='Y'; M=-150, -34,-114,-154, 53,-121, 19, -66,-150, 38, -33, -85,-163, -90, -89, -62,-144, -79, -25, 108; D=-19; /I: I=-19; MD=-49; /M: SY='G'; M=-134,-160, -61, -75,-165, 100, -47,-171, -69, -93,-157, -46, -94, -42,-157, -90,-115,-123,-158,-160; D=-19; /I: I=-19; MI=0; MD=-49; IM=0; DM=-49; /M: SY='Y'; M= -44, 35,-158,-117, 78, -60, 32,-108, -96, -74,-135,-107,-165, -84, -80, -49, -89, -6, -49, 94; D=-19; /I: I=-19; DM=-49; /M: SY='S'; M= -6, 15, -8, -43, -87, -55, -74, -67, 36, -50, -28, 8, 3, -7, 23, 40, 10, -29, -56, 7; D=-19; /I: I=-19; DM=-49; /M: SY='K'; M= -70, -66, 0, -63, -83, -49, -36,-155, 70,-112,-147, 21, -34, -9, 18, 54, 17,-116,-160, -97; D=-19; /I: I=-19; DM=-49; /M: SY='L'; M= -53, -60,-162,-156, 51,-162, -92, 1,-155, 74, 37, -67, -57, -96,-108,-116, -25, -14, -52, -97; D=-19; /I: I=-19; DM=-49; /M: SY='S'; M= -25,-150, -16, 27, -31, -19, -74, -4, -13, -13, 4, -29, -60, 13, -11, 59, 25, -25, -71, -74; D=-19; /I: I=-19; DM=-49; /M: SY='D'; M= -10, -53, 73, 54,-105, -68, 25,-154, 5, -84, -45, -5, -12, 16, -18, 16, -6, -73,-162, -71; /M: SY='L'; M= -60,-147,-108,-153, 69,-120,-144, -15,-152, 74, 46, -58,-159, -38,-151,-113, -66, -31,-139, -25; /M: SY='L'; M= -47, -58,-161, -91, 11,-162,-151, 52,-111, 67, 18,-156,-157,-150,-153,-149, -65, 41,-150,-130; /M: SY='E'; M= -4, -61, 6, 44, -41, -20, -25, -61, 40, -32, -33, -6, -78, 38, 41, 16, -33, -52,-155,-142; /M: SY='S'; M= 43, -11, 23, 6, -85, -58, -7, -32, 22, -36, -47, -7,-144, -34, -13, 54, -4, -80, 6, -45; /M: SY='M'; M= -4, 5, -55, -35, -4,-118, -18, 40, -71, 39, 67, -61, -76, -22, -40, -28, 13, -3, 24, 0; /I: I=-23; MD=-58; /M: SY='P'; M= -14, -30, -15, -21,-163, -33, -15, -91, 2, -59, -39, -32, 83, 2, -23, 21, -20, -66,-166,-157; D=-23; /I: I=-23; MI=0; MD=-58; IM=0; DM=-58; /M: SY='D'; M= -76, -85, 82, 15, -24, 22, 34,-163, -21,-131, -90, 32, -82, -19, -31, -27, -47,-160,-167, -39; D=-23; /I: I=-23; DM=-58; /M: SY='I'; M= -27,-149, -38, -34, -7, -18, -19, 41, -27, 24, -10, -15, -53, -33, -35, -40, 20, 41, -28, 19; /M: SY='V'; M= -29, 53, -65, -52, 59, -53,-150, 16, -73, 13, -33, -51, -66,-151, -64, -80, -52, 64,-146, 1; /M: SY='E'; M= -34, -61, 12, 56, -68, -68, 21, -21, 19, -38, -60, -78,-143, 28, 25, -1, 26, 9, -9, -51; /M: SY='I'; M= -73, -64, -92, -78, 0,-120, -70, 56,-110, 35, 22, -79, -48,-147, -3, -88, 12, 56, -58, -66; /M: SY='E'; M= -52, -47, 7, 48,-111, -64, 16, -8, 34, -63, -19, -26, -70, 39, 14, -2, 9, 9, -38, 8; /M: SY='Q'; M= -79, 4, 22, 22, -36, 0, 3, -29, 25, -72, -48, 10, -14, 31, 30, 2, 4, -24, 24, 7; /M: SY='P'; M= -46, -34, 31, 16, -49, 8, -4, -18, 16, -32, -38, 0, 34, 17, 10, 14, -17, -11, -32, -20; /I: I=-29; MD=-75; /M: SY='P'; M= -46, -85, 2, 27, -53, 33, -9, -67, -21, -32, -50, 29, 42, -34, 16, -5, -11, -71,-161, -57; D=-29; /I: I=-29; MI=0; MD=-75; IM=0; DM=-75; /M: SY='G'; M= -22, -54, 26, 3,-113, 43, 13,-114, 21, -91, -3, 28, 19, -10, -17, 33, -5,-150,-158, -40; /M: SY='G'; M= -26,-152, 5, -10, -28, 50, 2,-150, 21,-103, -20, 40, -27, 34, -9, 14, -5, -28,-155, -47; /M: SY='Q'; M= -27, -84, 23, 5,-115, -20, 32, 1, 3, -44, -39, 36, -7, 50, 11, -8, 21, -9, -18,-141; /M: SY='W'; M= -9, 28,-109, -64, 7, -78, 0, 24, 6, 9, -6, -68, -12,-143, -14, -74, -12, 39, 74, 35; /M: SY='Y'; M= -53, -24, -79, -36, 20,-105, 26, 27, -23, 16, 34,-145, -71, -7, 5, -24, -3, 28, 30, 49; /M: SY='V'; M= -3, -22,-107,-150, -33,-101, -49, 51, -95, 22, -41,-151, -43, -9, -30, -36, -43, 69,-155, -35; /M: SY='Y'; M= -33, 8, -26, -57, 16, -43, 15, -18, 16, 0,-133, -35,-103, -13, 52, 16, -15, -20, -14, 52; /M: SY='P'; M= 15, -97, 2, -24, -61, -41, 1, 16, -32, 34, -10, -29, 44, -39, -5, -24, -16, 4, -10, -78; /M: SY='K'; M= 3, -7, -40, -32, -45, -83, 0, -30, 57, -43, -48, 8, 14, -7, 36, 5, -22, 6, -58, -24; /M: SY='P'; M= -16, -61, 27, 22,-107, -8, -61, -94, 27, -46, -30, 13, 31, -53, 15, 17, 0, -15, -22, -15; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 117 in 33 different sequences |
| Number of true positive hits | 117 in 33 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 8 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | HTH OST-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
33 sequences
C3H18_ARATH (Q9SJ41), C3H51_ORYSJ (Q84ZT0), C3H54_ORYSJ (Q6ZK57), LRR2_PLAF7 (C6KSS5), MARF1_BOVIN (E1BP74), MARF1_CHICK (E1BZ85), MARF1_HUMAN (Q9Y4F3), MARF1_MOUSE (Q8BJ34), MARF1_RAT (Q8VIG2), MARF1_XENTR (B2GUN4), OSKA_DROME (P25158), OSKA_DROVI (Q24741), TDRD5_AILME (D2H3M0), TDRD5_BOVIN (E1BPH3), TDRD5_CANLF (E2QTD3), TDRD5_DANRE (Q1L981), TDRD5_HUMAN (Q8NAT2), TDRD5_MOUSE (Q5VCS6), TDRD5_RAT (B4F7C4), TDRD5_XENLA (A1L1H3), TDRD5_XENTR (A0JM98), TDRD7_AILME (D2H0H6), TDRD7_BOVIN (A6QLE1), TDRD7_CANLF (E2RDV1), TDRD7_CHICK (E1C3S7), TDRD7_HUMAN (Q8NHU6), TDRD7_MOUSE (Q8K1H1), TDRD7_PONAB (Q5RAH6), TDRD7_RAT (Q9R1R4), TDRD7_XENLA (Q6NU04), TDRD7_XENTR (Q5M7P8), TRD7A_DANRE (A6NAF9), TRD7B_DANRE (E7FDW8)» more
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| PDB [Detailed view] |
11 PDB
2LH9; 2LY1; 2LY2; 3RCO; 3S93; 5A48; 5A49; 5CD7; 5CD8; 5NT7; 5YAD |