PROSITE entry PS51676
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General information about the entry
| Entry name [info] | FF |
| Accession [info] | PS51676 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2013 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51676 |
| Associated ProRule [info] | PRU01013 |
Name and characterization of the entry
| Description [info] | FF domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=56; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=56; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4295199; R2=0.0045070; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=1347; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=904; N_SCORE=6.5; MODE=1; TEXT='RR'; /DEFAULT: M0=-43; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='Y'; M=-117,-132, -46,-105,-107,-128,-105, 32, 44, -58,-107,-110,-124, 54, 72,-112, -15,-110,-112, 73; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='R'; M= -18,-127, -20, 44,-121,-125, 44, -3, 47, -6, 10,-108,-119, -14, 48, -53, 15, -19,-131,-113; /M: SY='E'; M= -20,-129, 6, 75,-128, -55,-109, -69, 53, -18,-116,-106,-115, 7, 43,-107, 4,-121,-130,-119; /M: SY='A'; M= 57, -4, -3, 8, -46,-113,-114, 3, 36, -40, 14, 35,-120, -43, -19, 2, -30, -68, 13,-117; /M: SY='K'; M= -26,-129, -2, 5,-124,-123, -18, 3, 82, -77, -34,-105,-119, -97, 60, -27, -41, -33, -4, -49; /M: SY='E'; M= -14,-129, 33, 66,-131,-118, 1, -18, 24,-125,-118, 16, -22, 51, 6, 20, -62,-122,-133,-119; /M: SY='E'; M= 37,-125, 36, 49,-121, -63, -10, -14, 10, -16,-113, 36,-119, 23, -55, -5,-107, -47,-129, 6; /M: SY='F'; M=-123,-125, -55,-128, 110,-134, -31, 0, -14, -7,-100,-125,-134,-129, -23,-124,-116, 3,-100, 24; /M: SY='K'; M=-115, -31,-107, 38, -11,-126,-109, -38, 77, -12,-111,-107,-119, 53, 46,-111, -56, -42, -3,-113; /I: I=-25; MD=-63; /M: SY='E'; M= -12,-128, 42, 51,-128,-120,-112, -67, 37, -35, -14, -23,-118, 24, -13, 21, 24,-121, 25,-119; D=-25; /I: I=-25; MD=-63; /M: SY='M'; M= -23, 42,-134,-128, 21,-133,-120, 8,-124, 57, 75, -33,-133, -29, -30,-123, -22, -56, 25, -9; D=-25; /I: I=-25; MI=0; MD=-63; IM=0; DM=-63; /M: SY='L'; M=-119,-123,-136, -48, 19,-137,-121, -41,-128, 88, 22,-134,-134,-123,-126,-128,-116, -22, 53,-101; /M: SY='E'; M= -64,-128, 36, 60, -21,-122,-109,-118, 55, -24,-115, 4,-117, 31, 10, -12,-109, 6,-130,-116; /M: SY='E'; M=-110,-128, 48, 72,-127, -33,-108,-120, -44, -72,-118, 15,-116, 25, 16, 21, -4, 9,-134, -28; /M: SY='H'; M= 19, 49,-119,-114,-111,-121, 65, -16, 12, 26, 45, -18,-125,-108, 31, 1, 3, -50,-129, -1; /M: SY='Q'; M= -12,-127, 14, 26,-124, 1, 33, -64, 31, -49,-114, 18, 14, 39, -13, 20, -65, 8,-131, -15; /M: SY='F'; M= -49,-126,-113, 37, 45,-126, -22, 25, 17, -49,-106, -24, 3, 8, 20, 7, -28, 30,-122, -40; /I: I=-14; MD=-36; /M: SY='D'; M= -19, -20, 48, -35,-119,-122, -33, 34, -38, -26, 26, 13, 8, -48, -63, 40, -53, -6,-135, -2; D=-14; /I: I=-14; MI=0; MD=-36; IM=0; DM=-36; /M: SY='T'; M=-122,-134,-127,-126,-132, -53, 40, -3, 28, -74,-121, -42,-132,-124,-122, -18, 70, 16,-150,-127; D=-14; /I: I=-14; MI=0; MD=-36; IM=0; DM=-36; /M: SY='S'; M= 26,-131, -3, -53, -46,-120,-121,-121, -60, -27,-120,-117, 51, -39,-125, 54, -7, -21,-131, 31; D=-14; /I: I=-14; DM=-36; /M: SY='N'; M= -65,-127, 24, 0, 10, 8, 27,-124, -4, -72, 10, 43, -48, 3, -12, 24, 34,-122,-129, 14; D=-14; /I: I=-14; DM=-36; /M: SY='T'; M= 14, -29, -50, -1,-119,-115,-118, 1, -19, -52,-112, -42,-117, 8,-114, 54, 73, -34, 69,-114; /M: SY='T'; M= -40,-122, -21, -27,-122,-117, 5, -59, 8, -15,-112, 33, 31, 7, 21, 29, 69, -54,-133, -44; /M: SY='W'; M=-125,-141,-143,-129, 37,-128,-132, -12, -11, -38, 7,-137,-131,-122,-122,-129,-129, -59, 164, 44; /M: SY='E'; M= -63,-128, 27, 58,-129, -54,-109,-127, 14, -48, -4,-103, 19, 32, 32, 49, -4,-123,-132,-120; /M: SY='E'; M= -37,-129, 46, 72,-130,-121,-107,-123, 29, -36,-117, 4,-115, 55, -18, -22, 3, -24,-133,-120; /M: SY='I'; M= 39,-121,-126, -30, 43, -57,-124, 52,-121, -1, -99,-120,-125, -35,-124, -37, 18, 38,-121, -14; /M: SY='K'; M= -23, -31, -38, 21, -58,-121, -26, -2, 43, -14, 31,-109,-120, 38, 25, 34, -46, -4,-124, 19; /M: SY='H'; M= 4, -14, 39, -10,-129,-117, 53, -66, 42,-124, -27, 5, 40, 35, 19, 5, -33, -33,-134,-116; /M: SY='K'; M= -26,-126,-118, 10, -10,-128, 5, 34, 46, -4, 45,-115,-123,-107, 26, -35, -9, 22, 33, -10; /M: SY='I'; M=-118,-125, 5,-126, 45,-136, -7, 62,-127, 54, 1,-126,-131,-124,-127,-124,-113, 18, 1, -11; /M: SY='S'; M= -38, -27, -54, 46,-122, 13,-112, -34, 22, -74, 47, -22,-118, 25, -30, 53,-105, 14,-130, -38; /M: SY='N'; M= -26, -25, 39, 56, 10, -34, -44, -23, 5,-121, -3, 60, -45, -9, -27, 8, -6, -63,-132,-115; /M: SY='D'; M= -68,-129, 97, 38,-128,-118, 26,-128, -10, -19, -23, 13,-118,-102, -21, 1, -44,-126,-141, -28; /M: SY='P'; M=-115,-133, 24, 30,-126,-122, -29, -21, 22, 2,-113, -22, 87, 17, 8, -15, -60, -65,-131,-121; /M: SY='R'; M= -6, -11, -16, 31, -36, -43,-109, -57, 30, -70,-115,-107, -47, -1, 85, -1, -54, -18,-129,-116; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='Y'; M= -63, 29, -4,-122, 83, -56,-107,-112, -29,-106,-108,-120,-132,-118, 19, -52, -25,-115, 74, 93; /M: SY='K'; M= 5,-127, -2, 22,-119, -31,-110, 11, 38, -14,-110, 1, -45, 34, 36, 12, -13,-112,-125, 16; /M: SY='A'; M= 52, -29, 3, 19,-119,-116, -1, -62, 22, -20, -21, -10, 13, 17, -30, -20, -23, -8, 36, 1; /M: SY='M'; M=-115,-124, -27, -10, 26, -71,-120, 47,-123, 47, 61, -53,-128,-119,-124, -36, -56, 33,-121, 9; /I: I=-17; MD=-44; /M: SY='D'; M= -9,-130, 61, 18,-129, -27, 16, -49,-112, -13,-119, -25, -34, 15, -21, 37, -5, -13,-141,-122; D=-17; /I: I=-17; MI=0; MD=-44; IM=0; DM=-44; /M: SY='N'; M=-120,-132, 40,-109,-129,-121,-114,-125, 43, 15,-119, 67, 33,-111, -39, 18,-111,-126,-141,-126; D=-17; /I: I=-17; DM=-44; /M: SY='E'; M=-114,-131, 31, 76,-125, 3, -9, 18, -55, -26, 41,-110, -30,-102, -6, -27, 0, -66,-135,-120; D=-17; /I: I=-17; MI=0; MD=-44; IM=0; DM=-44; /M: SY='S'; M= -12,-133, -56, 33,-132,-125, -13,-127, 29, -20,-122, -47, -48, 15, 12, 49, -27, -27, -5,-125; D=-17; /I: I=-17; DM=-44; /M: SY='D'; M= -58,-135, 66, 58, -51,-127, 6, -63, -5,-128, -40,-107, -23, 10, -29, -43, 21, -11, -2,-122; D=-17; /I: I=-17; DM=-44; /M: SY='R'; M= 29, 7,-118,-109,-130, -57, -13,-132, 17, -74,-119, -17, 11, 3, 86, -29,-116,-126,-131, -24; D=-17; /I: I=-17; DM=-44; /M: SY='K'; M=-115,-129, -37, 64,-121,-125,-108, -59, 65, 24, 15, 4,-118, 27, 24,-111,-112,-117,-128,-116; /M: SY='Q'; M= 8, -28, 41, 39,-125, -41, -20, -21, 30, -9,-112, -17,-118, 58, 1, -21, -11, -27,-132,-117; /M: SY='L'; M= 10, 37,-130, -65, -21, -72,-125, 29, -12, 55, 5,-124,-129,-121,-122,-116, -5, 43,-128,-110; /M: SY='F'; M=-124,-125,-135,-132, 109,-134,-115, 23,-127, -16,-100,-127,-134,-131,-126,-122, -5,-101, 2, 65; /M: SY='E'; M=-114,-129, 29, 66, -55, -29,-105,-123, 0, -16,-116, 59,-119, 39, 19, -46,-110, -33, -11, 6; /M: SY='D'; M= -5,-129, 72, 53, -15,-118, -30, -50, 20,-126,-120, 2,-117, 56, -3, -9, -50,-124,-133,-117; /M: SY='H'; M= -67, -21, -23,-116, 35,-128, 102,-110, -11, 6,-102,-112,-129,-111, -51,-116, -61, -19, 29, 93; /M: SY='I'; M=-114, 4,-132,-124,-103,-136,-126, 70, 2, 45, 13,-125,-128, 16,-121,-121, -57, 44,-128,-110; /M: SY='E'; M= -31,-129, 16, 59, -14, -30, 35,-119, 31, -19,-113, -17, -47, 37, 26, -21, -52, -2,-130,-114; /M: SY='E'; M= -16,-127, 39, 40, 28, -26, 7, -27, 25, -71,-115, 22,-119, 40, 2, 2, -9, -35,-128,-111; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 108 in 24 different sequences |
| Number of true positive hits | 108 in 24 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 3 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 97.30 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 6 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | FF |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
24 sequences
DRE4_SCHPO (Q09685), PR40A_ARATH (B6EUA9), PR40A_HUMAN (O75400), PR40A_MOUSE (Q9R1C7), PR40B_ARATH (F4JCC1), PR40B_HUMAN (Q6NWY9), PR40B_MOUSE (Q80W14), PR40C_ARATH (Q9LT25), PRP40_SCHPO (O14176), PRP40_YEAST (P33203), RG190_DROME (Q9VX32), RHG05_HUMAN (Q13017), RHG05_MOUSE (P97393), RHG35_CANLF (P83509), RHG35_HUMAN (Q9NRY4), RHG35_MOUSE (Q91YM2), RHG35_RAT (P81128), RHG35_XENLA (Q6NU25), TCRG1_HUMAN (O14776), TCRG1_MOUSE (Q8CGF7), TCRGL_HUMAN (Q5VWI1), TCRGL_MOUSE (Q3B807), URN1_YEAST (Q06525), YO61_CAEEL (P34600)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
3 sequences
RGGA_ARATH (O23523), RGGB_ARATH (O23593), RGGC_ARATH (Q9LVT8) |
| PDB [Detailed view] |
23 PDB
1UZC; 2B7E; 2CQN; 2DOD; 2DOE; 2DOF; 2E71; 2JUC; 2K85; 2KFD; 2KIQ; 2KIS; 2KZG; 2L9V; 2LKS; 3HFH; 4FQG; 6N7P; 7ABF; 7ABG; 7OQE; 8Q7N; 8QO9 » more |