PROSITE entry PS51702
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General information about the entry
| Entry name [info] | HTH_MU |
| Accession [info] | PS51702 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JAN-2014 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51702 |
| Associated ProRule [info] | PRU01039 |
Name and characterization of the entry
| Description [info] | Mu-type HTH domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=67; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=62; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2966406; R2=0.0093798; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=10213.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=662; H_SCORE=10213; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=449; H_SCORE=10213; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-87; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='M'; M= -19, -61, -8, 44, -13,-106, -72, -15, -2, -49, 99, 8, -43, -23, -36, -4, 25, -7,-255,-236; /M: SY='W'; M= -61,-256, -42, -36, -77, -39, 61,-248, 58, -26, -19, 0, -85, 18, 5, 11, -38,-249, 115, 16; /M: SY='E'; M= -49, -22, 22, 69, 45, -64, -39, -3,-235, -8, 22,-239, -71, 1,-103, -85, -27, -57, 42, 53; /M: SY='W'; M= 7,-255, -80, -68, -73,-110,-254,-246, -82, -66,-245, -43, -61,-239, -64, 47, 46,-247, 154, -60; /M: SY='Y'; M= 38, -39,-255,-250, 58,-251, -78, 21,-249, 24, -39,-250, -16,-247,-249, -74,-108, 35,-235, 63; /M: SY='T'; M= 35,-243,-236, -42,-247, -94,-241,-104, -14, -39, -40, -51, -12, 13, -56, 49, 85, -43,-259,-243; /M: SY='E'; M= 69, -31, -43, 74,-252,-239,-241, -79, -69, -85,-240,-236, 4,-227,-239, -32, 23, -3,-257,-248; /M: SY='Q'; M= -22,-251, -69, -58, -59, -89,-237, 7, 60, 47, -21, -29,-248, 65, -16, 3, -64,-110,-250,-237; /M: SY='E'; M= 45,-251, 34, 86,-252, -96,-236,-243, -58, -1,-239,-234,-240, 23, -76, -89,-235, -16,-257,-246; /M: SY='L'; M= 12, 57, -2, 24, -60, -30,-244, 22, -25, 60, -71, -73,-251, -6,-244, -40,-236, -43,-253,-238; /M: SY='A'; M= 61,-244,-250, -19, -3,-245, -63, -4, -91, 42, 57,-246,-249,-240, -46, -48, -8, 18,-251,-235; /M: SY='G'; M= -11, -63, 18, 20, -89, 71, 20,-258, 15,-256,-246, 10, -32, 26, 2, -35, -53, -76,-256,-246; /M: SY='L'; M= -8, -14,-257,-250, -66,-257,-246, 16, -39, 80, 13,-253, -55, -52, -55, -47, -74, 5,-250, -51; /M: SY='P'; M= -10,-257, 14, -9, -69, -10, -39, -33, -63, 6, -3, -87, 100, -8, -64, -10, -26, -69,-256,-247; /M: SY='G'; M=-230, 26, 16, 0,-256, 91, -57, -87, -11,-256, -32, 2,-245,-238,-245, -12, -50, -47,-255, -61; /M: SY='M'; M=-241,-247,-261,-253, 43,-260,-245, 3, -76, 68, 87,-254,-257, -50,-249,-250, -74, 28,-245,-225; /M: SY='P'; M= -51,-261,-242,-233,-259, -60, -34,-250,-239,-102,-246,-243, 125,-240,-250, 32, -10,-252,-257,-255; /M: SY='T'; M= -21, -55, 1, -15,-249, 20, -20, -68, 20, -58, -39, 32,-244, -23, 15, 44, 51, -20, -5,-243; /I: I=-28; MD=-71; /M: SY='T'; M= -10,-250, -5, -63,-254, -57, -17,-250, -25, -62,-247, -66,-247, -79, -51, 59, 82,-243,-266, -33; D=-28; /I: I=-28; MD=-71; /M: SY='P'; M= 13,-261, 2, 26,-256, -79, -14, -8, 26, -62, -45, -73, 37, 0, -4, -58, -54, 16,-264, -54; D=-28; /I: I=-28; MI=-71; IM=-71; DM=-71; /M: SY='Q'; M= -27,-254, -52,-225, -66,-106, -49, -90, 30,-249, -22, -19, -3, 78, 77, 25, 6, -83,-254,-240; /M: SY='G'; M= 31,-248,-236,-243, -56, 80,-240,-255, -57,-255, -43, 55,-246,-236, 11, -6, -3,-249, -21,-248; /M: SY='I'; M= -43, -6,-260,-256,-228,-261,-258, 81,-253, 5, 12,-253,-254,-251,-255,-246, -40, 72, -12, -59; /M: SY='R'; M= -46,-252, -29, 5,-246, -87, 58, -7, -88, -9, -43, 44,-247, 38, 67, 3, 25, -70,-258, -61; /M: SY='R'; M= -10,-254, 7, 3, -47, -96, 0, -15, 55, 1, -42, 0,-247, 29, 57, -43, -93, -99,-248, 25; /M: SY='R'; M= -76, -67,-240, -83, -4,-251, 49, -57, 58, -27, 47, -61,-249, 13, 84,-109,-239, -38,-250, -18; /M: SY='A'; M= 99,-240,-248,-241, -64, -87,-247, -9,-243, 21,-230,-243,-246,-239,-246,-224,-231, -82,-252,-243; /M: SY='K'; M= -6,-252, 8, 32,-254, -39, -29,-251, 74, -68,-242, 30,-242, 19, 35, -31, -5, -50,-256,-244; /M: SY='R'; M= -6,-253, -65, 10,-252,-247, -47,-101, 65, -64,-240, 12,-245, -10, 84, -36, -19, -30,-254,-242; /M: SY='E'; M= -52,-254, 6, 92, -46, -85, -10,-248, -66, 3,-239, 25,-240, 40,-232, -8,-235, -94, -17, -1; /M: SY='G'; M= 19, -78, -43, -50, -69, 72, -21,-255, -30,-256,-247, 68,-246, -7, -87, 30,-232, -78, -14, -72; /M: SY='W'; M= -62,-271,-267, -18,-222, -47, -48,-248,-246, -99,-249,-263,-254,-245, -73, -23, -71, -51, 179,-209; /M: SY='Q'; M= -9,-253, -25, 20,-251, -14,-234, -62, 18, -18, -34, 29, 40, 73, 18, -55, 13, -50,-254, -64; /M: SY='K'; M= -13, 37, -29, -33, 44, -48, 23,-245, 51, -86, -13, 29,-248, -62, 12, 27, 0,-243, 23, 27; /I: I=-14; MI=0; MD=-35; IM=0; DM=-35; /M: SY='R'; M= -56,-259,-238, -5,-253,-252, -45, -86, -25, -95,-240,-233,-250, 32, 116, -76,-241, -60,-253,-240; /M: SY='K'; M= -48, -37, -38, 28,-254,-247, -56, -44, 75, -58, -32, -19, 28, 51, 50, -49,-103, -83,-253,-243; /M: SY='R'; M= -43, -43, -62, -29,-249,-252,-235, -40, 20, -93,-236, -91, -82, -10, 104, -76, -51, 31,-255,-240; /I: I=-20; MD=-50; /M: SY='E'; M= 26,-252, -13, 38, -35, -46, -37, -79, 21,-114, -36, -86, 36, 33, 3, 16, 18, -19,-256, -62; D=-20; /I: I=-20; MD=-50; /M: SY='G'; M= -9, 20,-244,-251,-260, 99,-249,-265, -21,-262,-252,-231,-248, -74, -35, -40, -74,-106,-255,-255; D=-20; /I: I=-20; MD=-50; /M: SY='R'; M= -71,-264,-252,-242,-257, -48, -40, -32, 34, -89, -64, -85, -17, -2, 78, -49, -37, 28,-265,-251; D=-20; /I: I=-20; MI=0; MD=-50; IM=0; DM=-50; /M: SY='G'; M= -88, -27,-240,-248, -56, 99, -34,-259, -38, -96,-248,-227,-245,-241,-249, 15, 16, -87,-252,-250; /M: SY='G'; M=-233,-254,-238, -30,-254, 74, -6, -40, 68,-252,-243, -45, -8,-230, 24,-100, -67, -5,-253,-246; /M: SY='G'; M= 53,-247,-242,-242,-253, 74,-244, -85, -51, -74,-242, -80,-245, -5, 15, -2, -7, -12,-253,-248; /M: SY='F'; M=-242, -43, -72, -57, 61,-254, -15, -2, 26, -6, -2, 7,-253,-237, 40, -87, -28, 24, 55, 47; /M: SY='E'; M= -46,-256,-213, 115, -83,-253,-232,-252, -54, -6,-243,-236,-235,-214, -36,-235,-238,-107,-255, -52; /M: SY='Y'; M=-249,-258,-252,-252, 46,-255,-220,-233,-245, -85,-228,-251,-261,-242,-242,-245,-244, -87, 75, 135; /I: I=-24; MD=-61; /M: SY='H'; M= 16, -76, -42, -48,-243,-247, 132, -52,-101, -4,-232, -19, -22, -74, -26, -24, -87, -83,-266, -8; D=-24; /I: I=-24; MI=0; MD=-61; IM=0; DM=-61; /M: SY='I'; M= -35,-252,-260,-256, 30,-261, -44, 71,-251, 23, -23, -52, -79,-250, -46, -84, -81, 44, 31, 24; D=-24; /I: I=-24; DM=-61; /M: SY='S'; M= 18, -55, 25, -41,-252, -63, -38,-250, -44,-115, -42, 33, -62, -10, -24, 80, 20, -86, -33, -40; D=-24; /I: I=-24; DM=-61; /M: SY='S'; M= 5, 24, -2,-238,-241,-105,-240, -18,-239, 10, -18, 5,-247,-234,-243, 89,-222, 20,-258, -56; /M: SY='L'; M= -83,-247,-262,-254, 52,-261,-244, -42,-253, 86, 63,-257, -32,-248,-251,-252,-240,-219,-242,-223; /M: SY='P'; M=-242,-267, -80,-232,-263, -81, -40,-251, -67,-261,-247,-248, 133,-242,-251, -35,-235,-256,-257,-259; /M: SY='E'; M= 28,-251, -17, 56,-247, -71, -21, -20, 7, -16, -4, -9, 34, 30, -52, -18, -3, -7,-255, -37; /M: SY='E'; M= 19,-251, 28, 71,-250, -59, -2, -37, -21, -65, -39, -16, -2, -22, -9, 20, -13, -4,-257, -34; /M: SY='T'; M= 54,-243, -80, -78,-238,-244,-249, 35,-242, -24, -3,-239,-245, -15,-246, -58, 67, 40, -5, -46; /M: SY='Q'; M= -90,-258, -80, -92, -36, -86, -44, -51, 14, -43, -39, -84,-248, 101, 86, -87,-239, -47,-251,-237; /M: SY='A'; M= 57,-247, -3, 23,-249,-104, -30,-106, -10, -5, -27, -15,-244, 49, 1, 17, 13, -27,-256,-243; /M: SY='A'; M= 68,-248, -57, 41, -35, -88, -3, -24, -5, -62, -40, -84, -80, 31, 19, -20, -66, -49,-249, 9; /M: SY='L'; M=-243,-249,-261,-255, -12,-264,-248, 66,-253, 75, -36,-257,-257,-249, -66,-251, -88, -4,-245, 13; /M: SY='R'; M= 27,-249, -80, -8,-238, 1,-241, 18, -38, 33, 30, -17,-249, -28, 44, -19, -5, -10, -20, -66; /M: SY='E'; M= 24,-250, -29, 38, -4, 1, -45, -36, 34, 11, 0, -14, -50, -8, 4, -14, -61, -4, -35, -58; /M: SY='R'; M= 16, -76, -30, -29, -85, -35, 47, -32, 37, -49, -11, 9, -36, 30, 62, 9, -9,-107,-255, -70; /M: SY='Q'; M= 13,-251, -20, 45, 9, -48, 32, -58, -23, -5, 22, -9, -54, 53, -4, -27, -1, -31,-248, 17; /M: SY='A'; M= 31,-248, -28, 18,-240, 23, -51, -2, -9, 13, -7, -34, -26, -8, -24, 10, -11, 3,-251, 5; /M: SY='Q'; M= 34,-249, -12, 1,-249, -27,-238, -20, 26, -5,-235, -38, 12, 49, 21, 9, 24, -43,-255,-243; /M: SY='Q'; M= 29,-250, -37, 32, -98, -41, -11, 8, -7, -62, -23, 1, 13, 55, -27, -1, 15, 11, -54, -73; /M: SY='A'; M= 49,-248, -21, 26,-244, -61, 2, -16, -6, 11, -40, -3, 34, -3, -94, -14, -12, 11,-256, -91; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 4 in 4 different sequences |
| Number of true positive hits | 4 in 4 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | HTH Mu-type |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
4 sequences
REPC_BPD10 (P07040), REPC_BPMU (P06019), TNPA_BPMU (P07636), TRA_HAEIN (O05069)» more
|
| PDB [Detailed view] |
4 PDB
1G4D; 1QPM; 1TNS; 1TNT |